tmem88a (tmem88a,LOC107554311,LOC107720688,LOC107742406,LOC107586221,LOC107676001)


Basic Information

Item Value
gene id tmem88a
gene name tmem88a,LOC107554311,LOC107720688,LOC107742406,LOC107586221,LOC107676001
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7812206 ~ 7817701 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249980.1
GCAGCGGGAGGCCAGAAAGAGAAGTGAGAGCGGAGAGATATAGCCGAGATACCAAGGCAGGACATCTTCGTCAAAGGAAGGAAAGAGCGGAGCAGGAAAGGAGGAAGAGAAAGGGCTGAAATAGTGGAGCGAGCTATCCACAGAGTTCAGTTTCACACAGAGCCAGAGGAGATTCTACAGGTGGACATGAAAACTAGATGAACAAAACATATAGCAGCAATTACAGACTGGAATAAGCATCTTGGCCAGTGTTAAGGATTAATTGTGGAAAGGAAATTATATAACAAGTAAAGGAAATCTTTCTGCAGGAGGAAAGGTGGTGTTTGAGGCAACGGACGGGCAACTTTATTACTCTATTccaaaactacattttcataTCCGAAAGACTGATGAACGGCAAGATGAGTCTTTCCCGTAACGGTACCCTGGAGAAACCCGTGTCCCTGCAGACCTCCACGGACCGAGGGGAGCTCGATTCTCCTCACCCGCGCCTCCATCACACCGGCTCCATCTCCTCCAGTACTCCAGCAAACATGTCCAGCTCAGGTGTGGTGGTTCCTCCTCCGTACTCGATAGCGGGCAGTGCGGTGAACGAGTCTCCTCTGGAGCTGAGGGGGTCTCTGGACTGTTGGGCCTGCTCTGTTCTGGTAACAGCACAGAATCTGATCATCGCCGCGCTCAATGTGGGTCTGGCCGCGTTTATCTTCGGCCTCATCCTCTTGCCGTCGCTAGTCATGGTTGTTTTTGGCTTCCTCTGCCATTCAACGGTTCAGCGCCACGGTACGTCCGTCTACTGTTCGGATCTCTTGGACGATGGAGGCTGTGTGGCTTTACTGGTGGTGGGGTTCCTGCTGCTGGCTCCGCTCCTGGTCCTGGCTCTGGCCGCTTACTGCAGAATGGCACGCCACCTCCAGCTGGGCCTGTGCTTCATCCCTTACAGCCGTGCCGTCTACAAGAACCTGCCTGCCTCGCGTCATCGAGGCCTGGGGGGCTGCTGTGGCCAACAGGGGGCAGGGGAGAGCGAGGGAAAGGGTAGCGTGTGGGTTTGAGCGGcctaaaaaaaagttcaatgtGAATAGCCATAGCAATAGGTCACATACAAACAACCACATAGTGCCAATATGTCAATACAAGCAGTGCCATGTTTTAGCAGTTTtacaaattgtgcatttattcaACATCAGGCtctttttagctgttttttaaaaccGGATCACCTAGAGACCTTAgtctcatttcatttttaaatggaatgaAAACAAAGCTACAAGGGATAGAAAGACATTGTGTTCAATGGCTTTTGGTCTTGTTTAACAACATAGTTCGGCTGAGAAAATTTGAGAAAATTCTTTTTTTGGCAGAGAGgatgtgaaaattaaaaaaaaagtaaaagtaaaggttctttattgccATTAAACTATAGAACCTTTTCATTCCACGAAAGGTTCTTTACAGtggaaaaaagtttttttgtttttaaatgattcaaatttcCTTCACACTTACAAAAAATCATACTTCTAAGAACTGGTCACTAAA

Function

symbol description
tmem88a Predicted to enable PDZ domain binding activity. Acts upstream of or within myeloid cell differentiation; negative regulation of canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment; and primitive hemopoiesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in blood cell; cardiovascular system; and mesoderm. Orthologous to human TMEM88 (transmembrane protein 88).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0030099 myeloid cell differentiation biological_process
GO:0060215 primitive hemopoiesis biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249980.1 True 1539 mRNA 0.47 3 7812206 7817701

Neighbor

gene id symbol gene type direction distance location
kdm6bb LOC107676007,LOC107742353,LOC107720684,LOC107586158,LOC107554308,LOC107678007 coding upstream 2123 7782188 ~ 7810083 (+)
efnb3a efnb3a,LOC107742355,LOC107720690,LOC107678015,LOC107586157,LOC107676033,LOC107554296 coding upstream 64810 7709173 ~ 7747396 (+)
gigyf1b gigyf1,LOC107554307,LOC107586156,LOC107676024,LOC107742356,LOC107678014 coding upstream 103986 7695316 ~ 7708220 (+)
nlgn2b nlgn2b,LOC107554306,LOC107678031,LOC107720555,LOC107675989,LOC108443341 coding upstream 130462 7615404 ~ 7681744 (+)
LOC122352927 NA coding upstream 273935 7533188 ~ 7538271 (+)
LOC122353466 NA coding downstream 46078 7863779 ~ 7863912 (+)
ap4m1 ap4m1,LOC107554303,LOC107702797,LOC107742404,LOC107720677,LOC107586161,LOC107675998 coding downstream 48634 7866335 ~ 7871448 (+)
med11 med11,LOC107720680,LOC107702800,LOC107676028 coding downstream 64184 7881885 ~ 7883525 (+)
c10h17orf49 zgc:103508,LOC107720679,LOC107742347,LOC107702799,LOC107675997,LOC107586165,LOC107554320,LOC105902403 coding downstream 67913 7885614 ~ 7889230 (+)
si:dkey-175g6.2 si:dkey-175g6.2,LOC107702794,LOC107720675,LOC107554299,LOC107586203,LOC107742340,LOC107676019 coding downstream 114382 7932083 ~ 7936387 (+)
G75574 NA non-coding upstream 129766 7682154 ~ 7682440 (+)
G75502 NA non-coding upstream 323639 7487475 ~ 7488567 (+)
G75516 NA non-coding upstream 404085 7402133 ~ 7408121 (+)
G75514 NA non-coding upstream 412173 7399428 ~ 7400033 (+)
G75513 NA non-coding upstream 412843 7398045 ~ 7399363 (+)
G75591 LOC107720685,LOC107586160,LOC107676011 non-coding downstream 22897 7840598 ~ 7859712 (+)
G75593 LOC107678008 non-coding downstream 27518 7845219 ~ 7849236 (+)
G75607 NA non-coding downstream 83522 7901223 ~ 7902731 (+)
G75629 NA non-coding downstream 218433 8036134 ~ 8069911 (+)
G75766 NA non-coding downstream 347747 8165448 ~ 8165704 (+)
G75496 LOC107720595,LOC107677995 other upstream 446875 7360984 ~ 7365331 (+)
LOC122353118 pcdh1g1,pcdh1g2,pcdh1g3,pcdh1gb2,pcdh1g9,pcdh1g11,pcdh1gb9,pcdh1g18,pcdh1g33,pcdh1gc5,pcdh1g32,LOC107677968,LOC107742392,LOC107688304,LOC107720705,LOC107552007,LOC107677966,LOC107586189,LOC107742391,LOC107688284,LOC107688294,LOC107586188,LOC107720703,LOC107677965,LOC107586192,LOC107742390,LOC107586191,LOC107552005,LOC107720701,LOC107688268,LOC108191536,LOC107552066,LOC107586138,LOC107687322,LOC107677986,LOC107677985,LOC103911742,LOC107677983,LOC107742370 other upstream 472011 7197537 ~ 7340195 (+)
LOC122352414 pcdh1a3,zgc:123181,pcdh1a4,LOC107742396,LOC107552012,LOC107586180,LOC107720566,LOC107720564 other upstream 648983 7153586 ~ 7163223 (+)
G75422 pcdh1a6,LOC107677970,LOC107552011,LOC107677969,LOC107742394,LOC107720565,LOC107586182,LOC107742396 other upstream 661625 7142293 ~ 7150581 (+)
trpc7a trpc7a,LOC107677994,LOC107720592,LOC107552051,LOC105905985,LOC108437819,LOC106603261 other upstream 818585 6981492 ~ 6993621 (+)
si:ch211-237l4.6 NA other downstream 109 7817810 ~ 7822518 (+)
LOC122353465 NA other downstream 43545 7861246 ~ 7861379 (+)
trnas-gcu_13 NA other downstream 43892 7861593 ~ 7861674 (+)
trnat-agu_2 NA other downstream 44259 7861960 ~ 7862033 (+)
arrb2a arrb2a,arrb2,LOC107742343,LOC107586162,LOC107676026 other downstream 54838 7872539 ~ 7880100 (+)

Expression


Co-expression Network