LOC122352544 (or109-1,LOC107579166,LOC107743480,LOC107743446,LOC107697403,LOC107579158,LOC107743479,LOC107741168)


Basic Information

Item Value
gene id LOC122352544
gene name or109-1,LOC107579166,LOC107743480,LOC107743446,LOC107697403,LOC107579158,LOC107743479,LOC107741168
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 14063166 ~ 14097125 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249983.1
CTTGTTGGTCGAGTTCAGCAGTGGTCCCCTCACCATAGAGGATCACCTATGAGCACACCCCTCTCATAAACTGAGCGACTAACATGGGGTCTCTAGGCCTCTAACGATAGTCCATGTTATGCAAGACAACAGGAATCATGAGCTCCATGCAGTCAGACTCCTCTGCAAATGTGACCTTTATTCGTCCTGCAACATTTTTTATCAGTGACTTTTCAAATATCCCACATGCAAAATACTACTATGTGTTCCTGTCTTTAGTGTATGTTGTGACTGTTTTAGGAAATTCATTTATCATGTGTATCATTTATTTGGCCCGCAGACTCCACACAGCCAAATACATTGCTGTTTTTCATCTGGCTTTTTCTGATCTGTGTGGAAGCTCAGCTTTGATTCCAAAAATCAtagacatgtttttatttgagcaCCAGGACATTTCTTATGACGCGTGCATGGctaatatgttttttgtataCCATTTCATGAATCTGCAGTCTTTGACACTTCTTGCTTTGGCTTATGACAGATTGGTAGCTATTTGTTTTCCTCTGCGGTATCATGCCATTGTAACCAAACCAGCCATGTTTCTGATCATAGGAGCGATGTGGATTTTGTctgtgacatttttttctgtacttgTAGGTTTGGTGAATAGACTCTCTTTTTGTAGGTCTAATGTACTTAATAGCTACTTTTGTGATTACGCCCAGATCTGTAGACTAGCCTGTAATgataattctataaatgttttgataGCTAATATTTCCTATGGTCTTCTGATTTGCACACCACTCATACTGATCATCATTACATATTTCTGCATTTCTCTGGCTTTGCTTAAGATTGCTCATGGTGCTGACAGAATGAAGGCCATAAAAACCTGTACTTCACATCTCATATTGGTGGCAATTTTTTATCTCCCAGTTTTAAGCAATATCATTGCATCTGTAACAACAcctttgcatttaaatactCAGATAATTAACAATTCCCTGACACAGGCAATACCACCTATGCTGAATCCCATCATATACACTCTAAAGACAGAGGAGGTCATGCAATCCATAAAAGACCTGTACAAACGGAGCAGGGTGAACATAACGAGAGAAAGGAAGATGAAATGCAGtagaatttaatataattacaggTTTAATTACATGTCTTCTGATCAATGTGTGAAGGAAAAATAATATGAGGTACATTTTGCCTACCACAAAATTGCTGTTAATTGACTGCCTGAATGAAACtcttatgtttttatgtgtgaaTTTGCGAATTAAACAGaccaaatatgtttaaaatctTTGGGCATAAATTAGAAATGCTGATTTGGGATTTATTTCtgctttgatattatttattataaaaatgttcaaataatttCAGTCAAGTCTTAATAATAAAGCTTTGAAACTATggacattttcattcagtgatTTAATAAGTcaattaaaagaacaaatataTTACTTGACTCTTAAtataagaataattttttttaaaaagatctgCATCTTATTTGTTGTGCATATTAACACACATCT

Function

NR:

description
PREDICTED: olfactory receptor 1C1-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007608 sensory perception of smell biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249983.1 True 1541 mRNA 0.35 2 14063166 14097125

Neighbor

gene id symbol gene type direction distance location
LOC122353024 or109-1,LOC107579166,LOC107743480,LOC107743446,LOC107741168,LOC107697403,LOC107579158,LOC107743479 coding downstream 6103 14056068 ~ 14057063 (-)
LOC122353030 LOC107583407,LOC107579158,LOC107686204,LOC107743479,LOC107589583,LOC107741179,LOC107697403 coding downstream 9086 14053056 ~ 14054080 (-)
LOC122352433 LOC107741179,LOC107686204,LOC107589583,LOC107583407,LOC107579158,LOC107743479,LOC107583406,LOC107589561 coding downstream 17114 14043687 ~ 14046052 (-)
LOC122352432 LOC107741179,LOC107686204,LOC107589583,LOC107583407,LOC107579158,LOC107743479,LOC107743480,LOC107697403 coding downstream 26842 14035335 ~ 14036324 (-)
LOC122352431 LOC107589561,LOC107583406,LOC107741179,LOC107589922,LOC107579158,LOC107686204,LOC107589583 coding downstream 32011 14030151 ~ 14031155 (-)
LOC122352755 NA coding upstream 176525 14273650 ~ 14277332 (-)
LOC122352754 NA coding upstream 180992 14278117 ~ 14280888 (-)
LOC122352756 ift46 coding upstream 183808 14280933 ~ 14285082 (-)
dhrs7ca LOC107758776,LOC107654658,LOC107552132 coding upstream 388204 14485329 ~ 14488534 (-)
si:ch211-165g14.1 LOC107726816,LOC107573383,LOC107673826 coding upstream 435362 14532487 ~ 14540838 (-)
G77379 NA non-coding downstream 68399 13994422 ~ 13994767 (-)
G77378 NA non-coding downstream 76000 13986935 ~ 13987166 (-)
G77352 NA non-coding downstream 257837 13805089 ~ 13805329 (-)
G77351 NA non-coding downstream 258274 13804483 ~ 13804892 (-)
G77347 NA non-coding downstream 262254 13800013 ~ 13800912 (-)
G77432 LOC107744607,LOC107691628,LOC107693969,LOC107747009 non-coding upstream 47766 14144891 ~ 14145304 (-)
G77456 NA non-coding upstream 194728 14291853 ~ 14292718 (-)
G77472 NA non-coding upstream 264229 14361354 ~ 14361734 (-)
G77476 NA non-coding upstream 269156 14366281 ~ 14368555 (-)
G77480 LOC107575404,LOC107692500,LOC107728752 non-coding upstream 327388 14424513 ~ 14425487 (-)
ovca2 ovca2,LOC107697430,LOC107743470,LOC107728834 other downstream 255347 13806104 ~ 13807819 (-)
ypel2a LOC106603438,LOC106931471,LOC106940241,LOC101067200,LOC107659943 other downstream 408753 13643184 ~ 13654413 (-)
sparta spg20,LOC107728829,LOC107589828,LOC107577790,LOC107697408 other downstream 519551 13538156 ~ 13543615 (-)
dclk1a dclk1a,dclk1,LOC107588999,LOC107728871,LOC107577778 other downstream 530102 13492273 ~ 13533064 (-)
mogat2 mogat2,LOC107751377,LOC107691703,LOC107747029,LOC107686211,LOC107589716,LOC107579037 other downstream 1274071 12782353 ~ 12789095 (-)
G77440 dlg1,LOC107738847,LOC107659037 other upstream 105137 14202262 ~ 14204127 (-)
G77441 dlg1l,LOC107653521,LOC107705307,LOC107660320 other upstream 107291 14204416 ~ 14208006 (-)
G77443 NA other upstream 137381 14234506 ~ 14264322 (-)
G77465 hyou1,LOC107691632,LOC107588517,LOC107747001,LOC107693979,LOC107577052 other upstream 242921 14340046 ~ 14343012 (-)
LOC122353009 LOC107562038,LOC107562041 other upstream 370061 14467186 ~ 14481449 (-)

Expression


Co-expression Network