LOC122352563 (pgls,LOC107672478,LOC107711179,LOC107757376,LOC107567243,LOC107670497)


Basic Information

Item Value
gene id LOC122352563
gene name pgls,LOC107672478,LOC107711179,LOC107757376,LOC107567243,LOC107670497
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 5029305 ~ 5031460 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250003.1
tttcataAGCCAGAGTTGAAGTATAAAAACACGAAGCATAAATCTTACGTGCTATTGTTATCCTAGTTTGTCGGCAGGCTCTTAAGTGCACGCATTTCGGTGCAATACTTCCTTTATTCGACTCGATCAAATTAAACTGTACAGagAATTATGTCTGGACGAAGAGTGGTGGTTTTCCCCTCAGTGACCGAGCTTGGATGCTCTCTGGCCCAGCTGGTGTTCTCACGAGCAGAAAAAGCTCTCAGCACAGGTGCAAGCTTCTCTCTGGGCCTTTCAGGAGGGAGTTTGGTGTCCATTCTGAGTAAGGAGCTGCCCGCTGTCCCAGACCTGGACTGCAGCAAATGGCTCATTGGATTCTGCGACGAGAGACTCGTTCCATTCAGTGATCCTGAAAGCACGTATGGCTTATATAAGAATCAGTTGTTTGGGAAAATCAGCATTCCGGAAGAAAGGATTTTGGCTATAGATCCTGCGTTACCCGTGCAAGAATGTGCAGATGACTATGCTGGCAAACTGAGCAAGGCTTTTAACACAGAGCAAATTCCAATTTTTGACATGCTGTTGCTGGGAATGGGACCAGATGGACACACCTGCTCTCTCTTTCCAGATCATCCTTTATTGCAGgAAAGCCAGAGGACAGTGGCACCCATCTCTGATTCCCCCAAACCACCGCCTCAACGTGTCACTATGACGTTACCCACAGTTAACTCTGCTCGATGTGTAGTGTTTGTGTCAACTGGGGGCAGCAAAGCTCCTGTGCTCAAGCAAGTATTGGAGGGTGGAGACGGCCCTGCCCTTCCAGCAGCTCTGGTCTCACCCGGACAGGGAGAGCTCTTCTGGCTGGTGGATGAGCCTGCAGCTGCCTCCCTCACGTCTCAGGTGGAGAGGCCAGGTCCTGGAGCAAAGCTTTGAATTCAGGAGACAGAACTGTCTAGTATTCTTATGGAGCACCTAAAAAGCCCTGTGTTTAACCAGACCCAGGATAACATGAATGTAATTACTGCAATTatcatttatactgtaaaacTGTTATGGGATCCGTGAAACTGTCAGAATCCGGTTTACTGATACTACATTAAACAATAAAGTagtaaaacaaa
>XM_043250004.1
CAGAATGCAACAGAATTCAACGTTCGCTGCGATTGGATGTTGGTTAGATCGCGTGAGGGGCACGTATAGGAAATCTCACTATTAAGAAAACATTCATTGagAATTATGTCTGGACGAAGAGTGGTGGTTTTCCCCTCAGTGACCGAGCTTGGATGCTCTCTGGCCCAGCTGGTGTTCTCACGAGCAGAAAAAGCTCTCAGCACAGGTGCAAGCTTCTCTCTGGGCCTTTCAGGAGGGAGTTTGGTGTCCATTCTGAGTAAGGAGCTGCCCGCTGTCCCAGACCTGGACTGCAGCAAATGGCTCATTGGATTCTGCGACGAGAGACTCGTTCCATTCAGTGATCCTGAAAGCACGTATGGCTTATATAAGAATCAGTTGTTTGGGAAAATCAGCATTCCGGAAGAAAGGATTTTGGCTATAGATCCTGCGTTACCCGTGCAAGAATGTGCAGATGACTATGCTGGCAAACTGAGCAAGGCTTTTAACACAGAGCAAATTCCAATTTTTGACATGCTGTTGCTGGGAATGGGACCAGATGGACACACCTGCTCTCTCTTTCCAGATCATCCTTTATTGCAGgAAAGCCAGAGGACAGTGGCACCCATCTCTGATTCCCCCAAACCACCGCCTCAACGTGTCACTATGACGTTACCCACAGTTAACTCTGCTCGATGTGTAGTGTTTGTGTCAACTGGGGGCAGCAAAGCTCCTGTGCTCAAGCAAGTATTGGAGGGTGGAGACGGCCCTGCCCTTCCAGCAGCTCTGGTCTCACCCGGACAGGGAGAGCTCTTCTGGCTGGTGGATGAGCCTGCAGCTGCCTCCCTCACGTCTCAGGTGGAGAGGCCAGGTCCTGGAGCAAAGCTTTGAATTCAGGAGACAGAACTGTCTAGTATTCTTATGGAGCACCTAAAAAGCCCTGTGTTTAACCAGACCCAGGATAACATGAATGTAATTACTGCAATTatcatttatactgtaaaacTGTTATGGGATCCGTGAAACTGTCAGAATCCGGTTTACTGATACTACATTAAACAATAAAGTagtaaaacaaa
>XM_043250005.1
AGTATAAAAACACGAAGCATAAATCTTACGTGCTATTGTTATCCTAGTTTGTCGGCAGGCTCTTAAGTGCACGCATTTCGGTGCAATACTTCCTTTATTCGACTCGATCAAATTAAACTGTACAGGTTGTTCACATCCCCTGTATTTCAGACagAATTATGTCTGGACGAAGAGTGGTGGTTTTCCCCTCAGTGACCGAGCTTGGATGCTCTCTGGCCCAGCTGGTGTTCTCACGAGCAGAAAAAGCTCTCAGCACAGGTGCAAGCTTCTCTCTGGGCCTTTCAGGAGGGAGTTTGGTGTCCATTCTGAGTAAGGAGCTGCCCGCTGTCCCAGACCTGGACTGCAGCAAATGGCTCATTGGATTCTGCGACGAGAGACTCGTTCCATTCAGTGATCCTGAAAGCACGTATGGCTTATATAAGAATCAGTTGTTTGGGAAAATCAGCATTCCGGAAGAAAGGATTTTGGCTATAGATCCTGCGTTACCCGTGCAAGAATGTGCAGATGACTATGCTGGCAAACTGAGCAAGGCTTTTAACACAGAGCAAATTCCAATTTTTGACATGCTGTTGCTGGGAATGGGACCAGATGGACACACCTGCTCTCTCTTTCCAGATCATCCTTTATTGCAGgAAAGCCAGAGGACAGTGGCACCCATCTCTGATTCCCCCAAACCACCGCCTCAACGTGTCACTATGACGTTACCCACAGTTAACTCTGCTCGATGTGTAGTGTTTGTGTCAACTGGGGGCAGCAAAGCTCCTGTGCTCAAGCAAGTATTGGAGGGTGGAGACGGCCCTGCCCTTCCAGCAGCTCTGGTCTCACCCGGACAGGGAGAGCTCTTCTGGCTGGTGGATGAGCCTGCAGCTGCCTCCCTCACGTCTCAGGTGGAGAGGCCAGGTCCTGGAGCAAAGCTTTGAATTCAGGAGACAGAACTGTCTAGTATTCTTATGGAGCACCTAAAAAGCCCTGTGTTTAACCAGACCCAGGATAACATGAATGTAATTACTGCAATTatcatttatactgtaaaacTGTTATGGGATCCGTGAAACTGTCAGAATCCGGTTTACTGATACTACATTAAACAATAAAGTagtaaaacaaa

Function

symbol description
pgls Predicted to enable 6-phosphogluconolactonase activity. Predicted to be involved in pentose-phosphate shunt, oxidative branch. Predicted to act upstream of or within carbohydrate metabolic process and pentose-phosphate shunt. Predicted to be active in cytoplasm. Orthologous to human PGLS (6-phosphogluconolactonase).

NR:

description
PREDICTED: 6-phosphogluconolactonase-like isoform X1

GO:

id name namespace
GO:0006098 pentose-phosphate shunt biological_process
GO:0017057 6-phosphogluconolactonase activity molecular_function

KEGG:

id description
K01057 PGLS, pgl, devB; 6-phosphogluconolactonase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250003.1 False 1100 mRNA 0.47 6 5029305 5031327
XM_043250004.1 False 1055 mRNA 0.48 6 5029305 5031460
XM_043250005.1 True 1108 mRNA 0.47 6 5029305 5031308

Neighbor

gene id symbol gene type direction distance location
LOC122352400 gmip,LOC107672475,LOC107670530,LOC107757342,LOC107587992,LOC107711163 coding downstream 12154 5000684 ~ 5017151 (-)
ubxn8 ubxn8,LOC107715867 coding downstream 118123 4905881 ~ 4911182 (-)
LOC122353167 wrn,LOC107715857,LOC107573262,LOC107758726 coding downstream 161726 4823464 ~ 4867579 (-)
LOC122352396 tln1,LOC107715875,LOC107670039 coding downstream 402264 4590288 ~ 4627041 (-)
nrg1 nrg1,LOC107575152,LOC107681480 coding downstream 621368 4358660 ~ 4407937 (-)
LOC122352871 LOC107711242,LOC107672448,LOC107588011,LOC107757354,LOC107670494,LOC107567230 coding upstream 18538 5049998 ~ 5053764 (-)
ywhah ywhah,LOC107562560,LOC107713377,LOC107688000,LOC107555530 coding upstream 216700 5248160 ~ 5252719 (-)
depdc5 LOC107713378,LOC107562559,LOC107686465,LOC107687976 coding upstream 221577 5253037 ~ 5274154 (-)
rab36 rab36,LOC107686502,LOC107562552,LOC107744178,LOC107555516,LOC108427235 coding upstream 243011 5274471 ~ 5279198 (-)
gnaz gnaz,LOC107555529,LOC107744122,LOC107686467,LOC107562557 coding upstream 252627 5284087 ~ 5324750 (-)
G74915 NA non-coding downstream 67072 4961570 ~ 4962233 (-)
G74869 NA non-coding downstream 101688 4927205 ~ 4927617 (-)
G74861 NA non-coding downstream 124836 4903977 ~ 4904469 (-)
G74858 ppp2cb,zgc:56064,LOC105021738,LOC107758729,LOC107728270 non-coding downstream 132218 4891594 ~ 4897087 (-)
G74846 NA non-coding downstream 188644 4839217 ~ 4840661 (-)
G74935 NA non-coding upstream 27054 5058514 ~ 5059679 (-)
G74936 LOC107567234,LOC107670466,LOC107757355,LOC107672456,LOC107711241,LOC107588012 non-coding upstream 29140 5060600 ~ 5061090 (-)
G74937 LOC107711241,LOC107588012,LOC107672456,LOC107757355 non-coding upstream 32410 5063870 ~ 5064146 (-)
G74943 NA non-coding upstream 48488 5079948 ~ 5080179 (-)
G74944 NA non-coding upstream 64168 5095628 ~ 5096028 (-)
LOC122352369 colgalt1,LOC107672476,LOC107711180,LOC107757371,LOC107670492,LOC107567242,LOC108429625,LOC107587993 other downstream 792 5019307 ~ 5028513 (-)
LOC122352741 diras2,LOC107560410,LOC107736992,LOC107702570,LOC107558266,LOC107715878,LOC107670053 other downstream 1116563 3905614 ~ 3912742 (-)
hnrnpd LOC107702593,LOC107715890,LOC107573849 other downstream 1421517 3601612 ~ 3607788 (-)
LOC122353137 palm2,LOC107702598,LOC107715893,LOC107732273,LOC107653494,LOC107569382 other downstream 1651521 3337339 ~ 3377784 (-)
LOC122352587 cntfr,LOC107554853,LOC107756542 other downstream 2262110 2717097 ~ 2767195 (-)
si:ch211-113d22.2 si:ch211-113d22.2,LOC107677989,LOC107705073,LOC107586211,LOC107688532 other upstream 1506662 6538122 ~ 6540973 (-)
sprn2 LOC107578968,LOC107720715 other upstream 1596965 6628425 ~ 6631188 (-)
G75454 LOC107552069,LOC107678002,LOC107586137,LOC107687386,LOC107742371,LOC108437806 other upstream 2145864 7177324 ~ 7180821 (-)
LOC122352929 LOC107675999,LOC107677996,LOC107552059,LOC107720693 other upstream 2492734 7524194 ~ 7528558 (-)
G75562 LOC107675999,LOC107720693,LOC107677996,LOC107552059 other upstream 2499401 7530861 ~ 7544090 (-)

Expression


Co-expression Network