zar1l (zar1l,LOC107686155,LOC107589787,LOC107728846,LOC107734432,LOC107691709,LOC107577757)


Basic Information

Item Value
gene id zar1l
gene name zar1l,LOC107686155,LOC107589787,LOC107728846,LOC107734432,LOC107691709,LOC107577757
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 13309532 ~ 13311075 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250014.1
AGCGCTTCTGCTCCTGATCACGCCGCAATGGAAGAGTTTCTCATTCCACCTTACAACTGTGGAGGTTACCCTGGCTATTTCCCCTTTTATCCCGGCAATGGGAAATTTAAACCCCAGAACTGGAACAAAAAGGGAAACAGTTTCTACGTTGCGCCAGACGCCCCCGATTATCTCGACTTTTACAAGCGCGCGCAGTTAAAAGCGATATTATCTCAGGTGAACCCGAACCTGACGCCGCGCCTCCGCAAGGCCAACACGAGGGAGTTCGGCGTGCAGGTCAACCCGAAGATAGACGCCACTGTCCAATGCTCGCTCGGGCCCAAAACGCTGTTTTATCGCGGTGATAAATGGGATTTAACGCTATCGAGGACGCCGTCCGTCAGCCCTCTGAAAGACACCCTGCCCAGCACGCCTGTCAACACCGTGCGCTTCTCGCGCCCCGTCGCCATCTACTCTCCCGTATTCGACCGCAGGATTTTCTCCTTATCCACGACTACCGGTGAAAGTAAGGACGAGGACGATGGAGAGGATGAGAGCAAGGAGACGGACAGCGAGACGGACGACGAGGAGAAGTGTAAACCGGATGAACCGACGCACAGCGAAACACCGCAGGGGAAGTCTGTGATTCAGCGGAATAAACGGTCAAACTTTCAGTTTCTGGAGCAGAAATATGGATTTTATCACTGCAGTAAGTGCAATATTCGATGGGAAAGTGCGTTTGTGTGGTGCATCTCGGGAACCTCCAAGGTGTACTTCAAGCAGCACTGCAGGAAGTGCCAGGCGGGACTGAATCCATATAGAGTGGAGTCCATTCAGTGCCAGGTTTGCTGTAAGACCCGCTGCTGCTGTGAACGGAAGCAGAGGCACATTGACATGCGCCGTCCTCACCGCCAGGATCTGTGCGGCCGCTGCAAGGGCAAAGGCCTTTCCTGTGACACCATCTACAGTTTCAAGTACATAGTGTGATTTGCGCCGGtctataaatgtgttttagaatCTTCATCGAGGGCTCAAGTGACGTTTTTGCGTGggatgtactgtatttttgtattataataaatttataaactAATAAAGTATTGCAGCATAA

Function

symbol description
zar1l Predicted to enable mRNA binding activity involved in posttranscriptional gene silencing. Predicted to be involved in translation. Predicted to be active in cytoplasm. Orthologous to human ZAR1L (zygote arrest 1 like).

NR:

description
ZAR1-like protein

GO: NA

KEGG:

id description
K18762 ZAR1; zygote arrest protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250014.1 True 1090 mRNA 0.51 4 13309532 13311075

Neighbor

gene id symbol gene type direction distance location
hunk hunk,LOC107686151,LOC107728887,LOC107734458,LOC107577711,LOC107691675,LOC107588971 coding downstream 123341 13178586 ~ 13186191 (-)
eva1c LOC107686146,LOC107588947,LOC107728854,LOC107734450,LOC107691670,LOC107577635 coding downstream 140317 13164709 ~ 13169215 (-)
si:dkey-18a10.3 LOC107588952,LOC107686147,LOC107735317 coding downstream 148013 13156144 ~ 13161519 (-)
il2rga LOC107728855,LOC107686149,LOC107589463 coding downstream 153444 13151955 ~ 13156088 (-)
ska2 ska2,LOC107588916,LOC107728893,LOC107686141,LOC107734479,LOC107577568,LOC107691666 coding downstream 210662 13094583 ~ 13098870 (-)
rfc3 rfc3,LOC107589808,LOC107728889,LOC107577751,LOC107691679 coding upstream 8800 13319875 ~ 13323889 (-)
ccdc169 LOC107686219,LOC107728839,LOC107589822 coding upstream 222676 13533751 ~ 13537968 (-)
ccna1 ccna1,LOC107728895,LOC107686159 coding upstream 232969 13544044 ~ 13546323 (-)
smad9 smad9,LOC107728873 coding upstream 247403 13558478 ~ 13565616 (-)
alg5 alg5,LOC107728859,LOC107697411,LOC107589073,LOC107577823 coding upstream 255469 13566544 ~ 13571292 (-)
G77208 NA non-coding downstream 98586 13210616 ~ 13210946 (-)
G77153 NA non-coding downstream 206473 13021653 ~ 13103059 (-)
G77157 NA non-coding downstream 273947 13033741 ~ 13035585 (-)
G77135 ppm1e,LOC107728886,LOC107686131,LOC107588822,LOC107734442,LOC107691656,LOC107577402 non-coding downstream 428797 12796664 ~ 12880735 (-)
G76912 NA non-coding downstream 630907 12678367 ~ 12678625 (-)
G77220 kl,LOC107577734,LOC107589796,LOC107728890 non-coding upstream 2119 13313194 ~ 13315574 (-)
G77245 NA non-coding upstream 17567 13328642 ~ 13328893 (-)
G77284 NA non-coding upstream 175192 13486267 ~ 13488833 (-)
LOC122352841 NA non-coding upstream 237179 13548254 ~ 13556657 (-)
G77294 NA non-coding upstream 244481 13555556 ~ 13556192 (-)
mogat2 mogat2,LOC107751377,LOC107691703,LOC107747029,LOC107686211,LOC107589716,LOC107579037 other downstream 520437 12782353 ~ 12789095 (-)
uvrag uvrag,LOC107691651,LOC107577365,LOC107686127,LOC107751378,LOC107589407 other downstream 540115 12678990 ~ 12769417 (-)
ccdc83 NA other downstream 1724572 11505310 ~ 11584960 (-)
LOC122352715 LOC107693960,LOC107747020,LOC107744618,LOC107699265 other downstream 2102280 11176569 ~ 11207252 (-)
G76625 NA other downstream 2270801 11017110 ~ 11038731 (-)
dclk1a dclk1a,dclk1,LOC107588999,LOC107728871,LOC107577778 other upstream 181198 13492273 ~ 13533064 (-)
sparta spg20,LOC107728829,LOC107589828,LOC107577790,LOC107697408 other upstream 227081 13538156 ~ 13543615 (-)
ypel2a LOC106603438,LOC106931471,LOC106940241,LOC101067200,LOC107659943 other upstream 332109 13643184 ~ 13654413 (-)
ovca2 ovca2,LOC107697430,LOC107743470,LOC107728834 other upstream 495029 13806104 ~ 13807819 (-)
G77440 dlg1,LOC107738847,LOC107659037 other upstream 891187 14202262 ~ 14204127 (-)

Expression


Co-expression Network