LOC122352574 (trpc7a,LOC107677994,LOC107720592,LOC107552051,LOC108437819,LOC105905985,LOC106603261)


Basic Information

Item Value
gene id LOC122352574
gene name trpc7a,LOC107677994,LOC107720592,LOC107552051,LOC108437819,LOC105905985,LOC106603261
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7063661 ~ 7076378 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250022.1
CTGAAGGGTCTGGGAGGGAGAACCTGAAGAAAAAGTGCTGTTTTACAAACTGGCCGTCACACTTGTTGCAGACCATGACGTTGATCGAGTCTCTCGCTGACCTGGAGCTCGTTTGTTCTCAAAATGCCGAATGAGAGAGACGACCGCGACATGCACGCCAAAGAGCAGTTCATCATGTCTCACGCCGCTCTTTGCACCATCCCGCTGGCGCTCTCGGCGGGAGAcgctgccgccgccgccgcgGAGACCGAGCGAGGCGCGCCCGACGCTCACGGAGAAGAGTTTGCCCACAGTCACAGAAACGCCTGCCTTCGCCCCGACAGACCTGCGCTGAACAGGTGTATGACTCTGCCTGGAGCTCTTGTAGAAAACGACCCCGTCAAGGCGGAGGCAGCGGAGGGATCCAGACATGAGTTCGGCCATCACGCGCACAGGTTGTTCGACAGCGATGACGACCTGGACTATCACGTGCACCATCACTGGCATCCTCACGAGAGCAACTCGCACTATTCCTTTGAGGCCATTCAGCGCAGACATACCACCCTGAGGAGAGTGCCGCGGCAGGCCGTCCGTGGCCCCGCTTACATGTTCAGCGAGAGAGGCACCAGTCTGACCGAAGAGGAGGAACGTTTCCTAGACGCTGCAGAGTATGGAAACATCCCCGTGGTCCGTAAGATGCTTGAAGAGTCCAAGACTTTGAATGTGAACTGTGTGGACTACATGGGTCAGAATGCGTTGCAGCTCGCTGTAGGGAACGAACACTTGGAGGTCACAGAACTGTTGTTGAAGAAAGAAGGGCTGGCGCGAGTGGGTGATGCCCTGCTGTTAGCCATCAGCAAAGGCTACGTGCGGATAGTAGAGGCCATCTTAGCCCATCCGGCATTCGAAGGTGGCCTCCGTCTGACTCTGAGTCCCCTGGAGCAACAGCTACGAGACGACGACTTCTACGCGCACGATGAAGACGGGACTCGCTTTTCCCAGGATGTCACGCCTATGATTCTAGCGGCCCACTGCAAGGAGTGCGAGATCGTGCACATTTTGTTACTCAAGGCTCGCATTGAGAAACCCCACGACTATTTCTGCAAGTGCGGCGAGTGTGCGGAGAAACAGAAGCAGGATTCTTTCAGCCATTCGCGATCGAGGATGAACGCCTATAAAGGCCTCGCCAGCGCTGCATATCTGTCACTGTCTAGCGAAGACCCTGTGCTCACGGCTCTGGAGCTCAGCAATGAGCTGGCACAACTCGCCAACATCCAGACTGAATTTAAGaatGACTACAGGAAGCTCTCCATGCAGTGTAAGGACTTTGTGGTCGGCGTTCTGGATCTCTGCAGGAACACAGAGGAGGTGGATGCCATTTTGAATGGAGATGTGGACCAGAACCCCCTGAGCGAACACCATCGCCCTTGCCTTAGCCGGGTCAAACTGGCCATTAAATATGAAGTGAAGAAGTTTGTGGCTCATCCGAACTGCCAGCAGCAGTTACTGACGCTGTGGTATGAGAATCTATCAGGCCTTAGGCAGCAGTCAATCGGCGTGAAGTGTTGGACAGTGCTGGGAGTGATGGTTGGCCTGCCATTTCTTGCTATTGCATATTGGATTATGCCCTGCAGCAAGGTGGGCCAGGTCCTCCGCAGTCCCTTTATGAAATTTGTAGCTCACGCCGTCTCGTTCACCCTCTTCCTATGTCTTCTGGTCCTCAATGCGTCCGACCGCTTTTCGGGGGTCAAAAACCTTCCTAACGAAACCATCACTGATCATCCACGGCAGATCTTTCGCATTAAAACCACTCAGTTCTCGTGGACAGAGATGTTGATAATGGAATGGGTGCTGGGAATGATCTGGACGGAGTGTAAGGAGGTTTGGGCCGACGGACCACGAGAATACATCATGCATTTGTGGAACGTGTTAGACTTCGGGATGCTGTCGGTGTTCGTGGCGTCATACACCGCGCGGTTCATGGCTTTCCTGCAAGCCTCCCATGCACAGCTCTATGTGGATTTGTACGTGACTAACGCAGATCTGATCAATGCCTCGTTACCAGAAGACGTGGCCTACTTCACTTATGCCAGGAACAGGTGGCTTCCCTCAGATCCTCAGCTCATCTCCGAGGGCTTGTACTCCATCGCTGTGGTGCTCAGTTTTTCACGTATTGCGTACGTTCTGCCGGCCAACGAGAGTTTTGGACCCTTGCAAATATCTCTTGGGCGCACTGTgaaggatatttttaaattcatggtCATCTTCATCATGGTCTTCCTCGCCTTCATGATCGGCATGTTTAATTTGTATTCCTACTACTTGGGGGCTAAATACAATCCTGCTTTTACCACGGTCGAGGAAAGCTTTAAAACACTGTTCTGGTCCATCTTTGGTTTATCTGAGGTGATCTCCGTGGTTCTGAAGTACGATCATAAGTTCATCGAGAACATTGGTTATGTGCTCTACGGGGTCTATAACGTCACAATGGTGGTGGTTCTGCTCAACATGCTCATAGCCATGATCAACCACTCATACCAGGAGATTGAGGAGGACGCTGACGTAGAATGGAAGTTTGCTCGTGCAAAGCTGTGGCTCTCCTATTTTGATGAAGGCAGCACTCTTCCACCCCCCTTTAATCTAATGCCCAGCCCCAAATCCTTCTATTACATGGCTCAGCGCACCAAAGCATGCCTAGTGAGTTTATGCAAGGCCAGGGTTCGTGGCAACAGCAGCCAGCAGGACGTGGGAACGGCCAATTCACGCTCTAAGCTTCGTCGGTTTCAGCCTTACCACGCACAGGAAGGCTTCACGGTTAGAAATCCTATCAAACACCCCACAAGATATCAGAAACTCATGAAGCGTCTCATCAAGCGGTATGTCCTAAAAGCCCAAATTGACAGCGAAAGTGATGAGATCAATGAAGGTGAGCTGAAGGAAATCAAGCAGGACATTTCCAGCCTCCGCTATGAGCTCCTGGAGGAAAAGTCGCAGGCCACTGAAGAACTCGCTGAGCTGATTCAGGAGCTCGGAGACAAACTCAGCAAAGGAGCAAAGAGACCATGAGAAACGAAACTCTTGTGATTCTAGCCGAGAGTGTCCTGGACCGAGTCTGGATCTgctgaaatatttagtttagatAAAAACTTTAAAGTCTTAAAACGTAATCCGTTTTAGACATCGGTTTGTGAAGGTGTGGTTTGTGGTGTAGgatgcaatttaataatttaataatttaatgacgCAGGAGAGACACAGTGctgtagaataataataaattcaaatggaCGTATTATCACAATatctatattattaaaatgacaacaagAGCTAAATGTGCTAGTTCTGACATTAGTTCTCAGTATCCCAGAGCTGCACATTATGATCAAGGAGGCTTGGCACATGAGTTAATGataacaatgtgtttttttaataaggtaGACATCCAAAATGTGCATGGTGGAAAAACTCCAGGATCTGGACGgagataatattataatatgcaataataatatagtaataataatgcgCAATAATACCTTTCTCGTTCTTACgcacacactttttaaattgtgtatcATGAAgaaatatagaattatattttgTCGGGAGAAAatgaagcctttttttttaagactgttAAAGGTTTTACAAGAAAGATAACTATGTTTCCCTTCCAAGACTGTAACgcagtaaaataaattttcatttctcaaaaaaacaaacaaaaaaacacacaatgcaaATGGTCCTAATGGAAGGCTTggttttctttatgcaaagtAGAAGTGGATAAAAACAACGGGGCTGTGTGTGTTAGTACTGACTGTTATGACGATGTATTGTCATATTtcagtttgaaaataaaatattaaaagtgccTGCTTATACCCGAGTTATTGATGGCATTTTTCAATAGTAGCATATGTTTAAACAAACGTACACTTTTTCTCGCAGGGATGCAGTtttgaaacaaaccaaaaataagcGTGCGTTTAAAACAGAAGGGTGTATCTTATAAAACTgtcaaaagtgttttattttgaagaaattaaagagtattattgttattacactgttattgttattattgttattaaactGAAACTACCATAGCCTGTATAGctcttcattttattaattaatttctttttattaattaagtgCTTATTGTTACcataattgttattttgtatcGATTTGTTATATGATTTGTCACCATTTGTGTTGCTTATTAGTTGCtccattcaaaattaaaataattatgttactCATTGCTTTCTGGAAATAGTTATTACTTGCACTACTAATTACATTACTTTTCCTTCAAGCTCCAGAGTATATTTCTCTAGAAAGATTTTACTGAATTACATCGGGTTCAAAGGAATGTGGGTGGGCCATGTAATGCAATACCACAAGTGTTCAGATCATCTTTTCTCCTGACTCAATGTAATGGCAATATCcactgaatataattttttatataaaatttattaaagGATTATTGGATTTTAAATCAGCAGGGGTTAGGGCATCGAAAGTAACTagctgttttaaaattattactgaataattattagtaaaaaattAGTTACG

Function

symbol description
trpc7a Predicted to enable inositol 1,4,5 trisphosphate binding activity and store-operated calcium channel activity. Predicted to be involved in metal ion transport; regulation of cytosolic calcium ion concentration; and single fertilization. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of cation channel complex. Predicted to be integral component of plasma membrane. Is expressed in midbrain and olfactory receptor cell. Orthologous to human TRPC7 (transient receptor potential cation channel subfamily C member 7).

NR:

description
PREDICTED: short transient receptor potential channel 7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250022.1 True 4575 mRNA 0.45 15 7063661 7076378

Neighbor

gene id symbol gene type direction distance location
prnpb NA coding upstream 437063 6625432 ~ 6626598 (+)
si:dkey-81j8.6 LOC107720718,LOC107678005,LOC107572716,LOC107708650 coding upstream 439447 6614030 ~ 6624214 (+)
letm2 letm2,LOC107678006,LOC107687501,LOC107572715,LOC107586128,LOC107705077,LOC107720574 coding upstream 452786 6602377 ~ 6610875 (+)
r3hcc1 LOC107678027,LOC107553705,LOC107720724,LOC107687605,LOC107586124,LOC107705083 coding upstream 547734 6507050 ~ 6515927 (+)
golga7 golga7,LOC107553707,LOC107678053,LOC107586122,LOC107687624,LOC108276767 coding upstream 557576 6502318 ~ 6506085 (+)
LOC122352576 etf1b,etf1,LOC107552075,LOC107678033,LOC108437808 coding downstream 183 7076561 ~ 7082454 (+)
fbxw11b fbxw11b,LOC107687420,LOC107678030,LOC107720711 coding downstream 6594 7082972 ~ 7094576 (+)
LOC122352586 LOC107552073,LOC107720710,LOC107586140,LOC107688350 coding downstream 37025 7113403 ~ 7117973 (+)
LOC122352453 LOC107720709,LOC107552072,LOC107678037,LOC107687397,LOC107586142,LOC100006797 coding downstream 42204 7118582 ~ 7125259 (+)
LOC122352572 LOC107552014,LOC107720569,LOC107720570 coding downstream 51226 7127604 ~ 7130592 (+)
G75371 LOC107564544,LOC107678039,LOC107708655,LOC107586135,LOC107720713,LOC108437809,LOC105905969 non-coding upstream 304016 6734932 ~ 6759645 (+)
G75361 NA non-coding upstream 407751 6644036 ~ 6655910 (+)
G75236 LOC107678050 non-coding upstream 483732 6578172 ~ 6579929 (+)
G75230 NA non-coding upstream 519416 6542088 ~ 6544245 (+)
G75192 NA non-coding upstream 858740 6179206 ~ 6204921 (+)
G75498 NA non-coding downstream 289039 7365417 ~ 7366605 (+)
G75513 NA non-coding downstream 321667 7398045 ~ 7399363 (+)
G75514 NA non-coding downstream 323050 7399428 ~ 7400033 (+)
G75516 NA non-coding downstream 325755 7402133 ~ 7408121 (+)
G75502 NA non-coding downstream 411097 7487475 ~ 7488567 (+)
trpc7a trpc7a,LOC107677994,LOC107720592,LOC107552051,LOC105905985,LOC108437819,LOC106603261 other upstream 70040 6981492 ~ 6993621 (+)
LOC122352486 LOC107720590,LOC107677990,LOC107553711,LOC107705075,LOC107586209 other upstream 591554 6454065 ~ 6472107 (+)
lrrtm4l1 lrrtm4l1,LOC107730422,LOC107553720,LOC107687748,LOC107720738,LOC107561403 other upstream 974074 6061191 ~ 6089587 (+)
G75062 LOC107744182,LOC107678054,LOC107567441,LOC107713390,LOC107687817 other upstream 1501576 5560651 ~ 5562085 (+)
ccl19b LOC107744181,LOC107677997,LOC107567444,LOC107555521,LOC107713300,LOC107688602,LOC107713257 other upstream 1563273 5498647 ~ 5500388 (+)
G75422 pcdh1a6,LOC107677970,LOC107552011,LOC107677969,LOC107742394,LOC107720565,LOC107586182,LOC107742396 other downstream 65915 7142293 ~ 7150581 (+)
LOC122352414 pcdh1a3,zgc:123181,pcdh1a4,LOC107742396,LOC107552012,LOC107586180,LOC107720566,LOC107720564 other downstream 77208 7153586 ~ 7163223 (+)
LOC122353118 pcdh1g1,pcdh1g2,pcdh1g3,pcdh1gb2,pcdh1g9,pcdh1g11,pcdh1gb9,pcdh1g18,pcdh1g33,pcdh1gc5,pcdh1g32,LOC107677968,LOC107742392,LOC107688304,LOC107720705,LOC107552007,LOC107677966,LOC107586189,LOC107742391,LOC107688284,LOC107688294,LOC107586188,LOC107720703,LOC107677965,LOC107586192,LOC107742390,LOC107586191,LOC107552005,LOC107720701,LOC107688268,LOC108191536,LOC107552066,LOC107586138,LOC107687322,LOC107677986,LOC107677985,LOC103911742,LOC107677983,LOC107742370 other downstream 121159 7197537 ~ 7340195 (+)
G75496 LOC107720595,LOC107677995 other downstream 284606 7360984 ~ 7365331 (+)
si:ch211-237l4.6 NA other downstream 741432 7817810 ~ 7822518 (+)

Expression


Co-expression Network