LOC122352576 (etf1b,etf1,LOC107552075,LOC107678033,LOC108437808)


Basic Information

Item Value
gene id LOC122352576
gene name etf1b,etf1,LOC107552075,LOC107678033,LOC108437808
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7076561 ~ 7082454 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250026.1
GCCTTTCCCCCCACGTGAGCCTCCACCGAAGCACCACGCGCAGCAAGACCAAACCGGCTGCTAACGATAAGTGTATCAcgtcactgagaaacagcggcGAGCGAGCTGTGGACCACAAAGTAACTGCCGTACGGACGCGGCGGAGCGGATCATTCTAGTCTCAGGTCCAGACAGCGCGAGGAAGATGGCGGACGACCCCAGCGCAGCGGACAGGAACGTGGAAATCTGGAAGATTAAGAAGTTAATCAAAAGCCTTGAGGCGGCTAGAGGAAACGGCACTAGTATGATTTCCCTCATCATCCCACCCAAGGATCAAATCTCTCGTGTGGCGAAGATGTTGGCCGATGAGTTCGGCACAGCTTCGAACATCAAGAGCAGAGTCAACAGACTCTCGGTGCTGGGAGCCATTACCTCAGTACAGCAGAGACTCAAACTCTACaacaaagTGCCTCCTAATGGCCTGGTGGTGTATTGTGGCACCATAGTGACAGAGGAAGGCAAAGAGAAGAAAGTAAACATTGATTTCGAGccttttaaaccaatcaacacATCCTTGTATTTATGTGACAATAAGTTCCATACTGAGGCTCTAACAGCTCTGCTGTCAGACGACAGCAAGTTCGGCTTCATTGTGATTGATGGTAGTGGCGCCCTGTTTGGGACTTTACAAGGCAACACAAGGGAGGTGTTGCACAAATTTACTGTGGACCTGCCTAAAAAACACGGTAGAGGAGGACAGTCCGCTCTTCGATTTGCACGTTTGAGGATGGAGAAGAGACACAACTATGTGCGTAAGGTAGCGGAGACGGCTGTGCAGCTCTTCGTGTCCAATGACAAGGTCAACGTGGCAGGACTGGTTCTCGCCGGATCGGCCGATTTCAAGACGGAGCTCAGCCAGTCGGACATGTTCGATCCGAGGTTACAAGCGAAGGTCCTAAAGCTGGTTGATATATCGTATGGAGGAGAGAACGGTTTCAACCAGGCCATTGAGCTTTCGGCAGAAGTTCTGTCCAATGTCAAGTTCATCCAAGAAAAGAAACTAATAGGCCGATACTTTGATGAGATCAGTCAGGACACAGGGAAGTATTGTTTTGGAGTTGAAGACACACTCAAAGCGCTGGAGATGGGAGCGGTGGAGATTCTTATAGTTTACGAGAACCTGGACACTATGCGTTACGTCCTACGCTGTCATGGAGAAAATACTACACCAGAAAatgATGAAAAGATACTCTATCTGACACCGGAACAGGAAAAAGACAAGTCTCATTTCACTGACAAGGAGACGGGTCAGGAGCATGAGCTGATTGAGAGCATGCCGCTGCTTGAGTGGTTCGCCAATAACTACAAGAAGTTCGGGGCCACGCTGGAAATCGTTACAGACAAAAGCCAGGAGGGTTCACAGTTTGTGAAAGGCTTTGGAGGCATCGGTGGAATCTTGCGGTACCGGGTGGACTTCCAAGGCATGGAGTACCAGGGAGACGACGATGAGTTTTTTGATTTAGATGACTACTAGGTAGTCGGGACTGAcacaaaattcaaatataagATTTTTCCCCTTCACCTACCCCGCGAACGGCAGGGGAGCGAAGGAGATCGAATCAGCAGGAGGGAGAATAAGAATTTAAGAAGATGGCGGATGGTCTGCGTGTCCCTGGCTTTAGAATACAGCGACTCCATCTCTGGACTGGAAGAGACTGAGTTTTCTCCTCTCCACTAATTACCGGGTCATCGCAACAGCATGGCCGTGGCCCGTCTGCCTGTCCTGCCTCAGCTCTTCACGAAAACACTCTAGGCTTTCAGATCTACTTTTTCTTCCCTTCTAATCGCACTCCTTTTCTTCCTTTTGCCTCTCCTTTTATAATGGCATCTGCTGctgttgtattttattcaaatgtattatattttctcTTATTCAGTGTATGAAGAAAGCAGTAGCAAATGATTAGATCTGTACTGCTTACCTCTAGCCACCTCGAGCCCATTGCCAGGCCTGCGTTTTAATTTCCTGGTTAGCCCAGACTTGATTTGTTGCCTTGTTTCTGCTGTAAACCAGTGTGGTggttggtggtggtggtgatgcaCTCTGAGCCAGCGGTACACCCTGCTCCTCCCATCGCATTGTGCCCACATTGAGGCGTTTCTTGCTCTCAAATGGACCATATAGTAACTGGACCCATCCCTTCTTGAAGACCGAGAACCGTCTTTCACAGTACATTGCCCTCACTTGTTTTCCTCAGCCCCCAGGAGATGCTACTTCtcaaaataaactatatatgaGTGCCTGAATTTTGCAGTTTGTGAGATATGACAGCACAGTGTACCAGCATCCGGGCCCTAACTTCAGCCTCCTGCTGTTTCCGAACATAAAATCTTAGCTCGAGCCTTCAGCACTCATTGGTATTCGACGGCTTTATGCATGGGAATGTCCTTTCGGACCGATTatggggtgggggtgggggggtTACTGTGTTAACTGTGATGTGTGAGTGAGTATATGTCAGTTCGGCTGTTTAATTCCCTTTTTAAAAGTCACGTCTCAGAGTCTGACCCGCCGCAGATTACAAGCATCGAAGTTCTTTGCATTTATGTCCAGTCATATTTTAACAACGGATTGGTTTTAGAAAGACAAGCTgcaaatcaatattttgaaCCTTTTAACAACTGTGGCATGGTTGGCGTTTTGACGCCTACTTAAACGAACATGCAAACCGATAATGTAAAAGGAGAGAGGGGGGGAGAAACGATCCAAAACACGGGCCCACAATATTTTAGCGAatattatgttgtatattttctcattttctttgatCCATCACTATTTTGTATAAATCATTTGTTACATCTGGACACAGACATTAAACGTTCTCATTGTTTGCAAA
>XM_043250027.1
TTTCCCCCCACGTGAGCCTCCACCGAAGCACCACGCGCAGCAAGACCAAACCGGCTGCTAACGATAAGTGTATCAcgtcactgagaaacagcggcGAGCGAGCTGTGGACCACAAAGTAACTGCCGTACGGACGCGGCGGAGCGGATCATTCTAGTCTGTCCAGACAGCGCGAGGAAGATGGCGGACGACCCCAGCGCAGCGGACAGGAACGTGGAAATCTGGAAGATTAAGAAGTTAATCAAAAGCCTTGAGGCGGCTAGAGGAAACGGCACTAGTATGATTTCCCTCATCATCCCACCCAAGGATCAAATCTCTCGTGTGGCGAAGATGTTGGCCGATGAGTTCGGCACAGCTTCGAACATCAAGAGCAGAGTCAACAGACTCTCGGTGCTGGGAGCCATTACCTCAGTACAGCAGAGACTCAAACTCTACaacaaagTGCCTCCTAATGGCCTGGTGGTGTATTGTGGCACCATAGTGACAGAGGAAGGCAAAGAGAAGAAAGTAAACATTGATTTCGAGccttttaaaccaatcaacacATCCTTGTATTTATGTGACAATAAGTTCCATACTGAGGCTCTAACAGCTCTGCTGTCAGACGACAGCAAGTTCGGCTTCATTGTGATTGATGGTAGTGGCGCCCTGTTTGGGACTTTACAAGGCAACACAAGGGAGGTGTTGCACAAATTTACTGTGGACCTGCCTAAAAAACACGGTAGAGGAGGACAGTCCGCTCTTCGATTTGCACGTTTGAGGATGGAGAAGAGACACAACTATGTGCGTAAGGTAGCGGAGACGGCTGTGCAGCTCTTCGTGTCCAATGACAAGGTCAACGTGGCAGGACTGGTTCTCGCCGGATCGGCCGATTTCAAGACGGAGCTCAGCCAGTCGGACATGTTCGATCCGAGGTTACAAGCGAAGGTCCTAAAGCTGGTTGATATATCGTATGGAGGAGAGAACGGTTTCAACCAGGCCATTGAGCTTTCGGCAGAAGTTCTGTCCAATGTCAAGTTCATCCAAGAAAAGAAACTAATAGGCCGATACTTTGATGAGATCAGTCAGGACACAGGGAAGTATTGTTTTGGAGTTGAAGACACACTCAAAGCGCTGGAGATGGGAGCGGTGGAGATTCTTATAGTTTACGAGAACCTGGACACTATGCGTTACGTCCTACGCTGTCATGGAGAAAATACTACACCAGAAAatgATGAAAAGATACTCTATCTGACACCGGAACAGGAAAAAGACAAGTCTCATTTCACTGACAAGGAGACGGGTCAGGAGCATGAGCTGATTGAGAGCATGCCGCTGCTTGAGTGGTTCGCCAATAACTACAAGAAGTTCGGGGCCACGCTGGAAATCGTTACAGACAAAAGCCAGGAGGGTTCACAGTTTGTGAAAGGCTTTGGAGGCATCGGTGGAATCTTGCGGTACCGGGTGGACTTCCAAGGCATGGAGTACCAGGGAGACGACGATGAGTTTTTTGATTTAGATGACTACTAGGTAGTCGGGACTGAcacaaaattcaaatataagATTTTTCCCCTTCACCTACCCCGCGAACGGCAGGGGAGCGAAGGAGATCGAATCAGCAGGAGGGAGAATAAGAATTTAAGAAGATGGCGGATGGTCTGCGTGTCCCTGGCTTTAGAATACAGCGACTCCATCTCTGGACTGGAAGAGACTGAGTTTTCTCCTCTCCACTAATTACCGGGTCATCGCAACAGCATGGCCGTGGCCCGTCTGCCTGTCCTGCCTCAGCTCTTCACGAAAACACTCTAGGCTTTCAGATCTACTTTTTCTTCCCTTCTAATCGCACTCCTTTTCTTCCTTTTGCCTCTCCTTTTATAATGGCATCTGCTGctgttgtattttattcaaatgtattatattttctcTTATTCAGTGTATGAAGAAAGCAGTAGCAAATGATTAGATCTGTACTGCTTACCTCTAGCCACCTCGAGCCCATTGCCAGGCCTGCGTTTTAATTTCCTGGTTAGCCCAGACTTGATTTGTTGCCTTGTTTCTGCTGTAAACCAGTGTGGTggttggtggtggtggtgatgcaCTCTGAGCCAGCGGTACACCCTGCTCCTCCCATCGCATTGTGCCCACATTGAGGCGTTTCTTGCTCTCAAATGGACCATATAGTAACTGGACCCATCCCTTCTTGAAGACCGAGAACCGTCTTTCACAGTACATTGCCCTCACTTGTTTTCCTCAGCCCCCAGGAGATGCTACTTCtcaaaataaactatatatgaGTGCCTGAATTTTGCAGTTTGTGAGATATGACAGCACAGTGTACCAGCATCCGGGCCCTAACTTCAGCCTCCTGCTGTTTCCGAACATAAAATCTTAGCTCGAGCCTTCAGCACTCATTGGTATTCGACGGCTTTATGCATGGGAATGTCCTTTCGGACCGATTatggggtgggggtgggggggtTACTGTGTTAACTGTGATGTGTGAGTGAGTATATGTCAGTTCGGCTGTTTAATTCCCTTTTTAAAAGTCACGTCTCAGAGTCTGACCCGCCGCAGATTACAAGCATCGAAGTTCTTTGCATTTATGTCCAGTCATATTTTAACAACGGATTGGTTTTAGAAAGACAAGCTgcaaatcaatattttgaaCCTTTTAACAACTGTGGCATGGTTGGCGTTTTGACGCCTACTTAAACGAACATGCAAACCGATAATGTAAAAGGAGAGAGGGGGGGAGAAACGATCCAAAACACGGGCCCACAATATTTTAGCGAatattatgttgtatattttctcattttctttgatCCATCACTATTTTGTATAAATCATTTGTTACATCTGGACACAGACATTAAACGTTCTCATTGTTTGCAAA

Function

symbol description
etf1b Predicted to enable sequence-specific mRNA binding activity and translation release factor activity, codon specific. Acts upstream of or within brain development. Predicted to be located in cytoplasm. Predicted to be part of translation release factor complex. Predicted to be active in cytosol. Orthologous to human ETF1 (eukaryotic translation termination factor 1).
etf1 Enables sequence-specific mRNA binding activity and translation release factor activity. Involved in regulation of translational termination. Acts upstream of or within protein methylation and translational termination. Located in cytoplasm.

NR:

description
eukaryotic peptide chain release factor subunit 1

GO:

id name namespace
GO:0006415 translational termination biological_process
GO:0005737 cytoplasm cellular_component
GO:0016149 translation release factor activity, codon specific molecular_function

KEGG:

id description
K03265 ETF1, ERF1; peptide chain release factor subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250026.1 True 2879 mRNA 0.47 11 7076561 7082454
XM_043250027.1 False 2873 mRNA 0.47 11 7076564 7082454

Neighbor

gene id symbol gene type direction distance location
LOC122352574 trpc7a,LOC107677994,LOC107720592,LOC107552051,LOC108437819,LOC105905985,LOC106603261 coding upstream 183 7063661 ~ 7076378 (+)
prnpb NA coding upstream 449963 6625432 ~ 6626598 (+)
si:dkey-81j8.6 LOC107720718,LOC107678005,LOC107572716,LOC107708650 coding upstream 452347 6614030 ~ 6624214 (+)
letm2 letm2,LOC107678006,LOC107687501,LOC107572715,LOC107586128,LOC107705077,LOC107720574 coding upstream 465686 6602377 ~ 6610875 (+)
r3hcc1 LOC107678027,LOC107553705,LOC107720724,LOC107687605,LOC107586124,LOC107705083 coding upstream 560634 6507050 ~ 6515927 (+)
fbxw11b fbxw11b,LOC107687420,LOC107678030,LOC107720711 coding downstream 518 7082972 ~ 7094576 (+)
LOC122352586 LOC107552073,LOC107720710,LOC107586140,LOC107688350 coding downstream 30949 7113403 ~ 7117973 (+)
LOC122352453 LOC107720709,LOC107552072,LOC107678037,LOC107687397,LOC107586142,LOC100006797 coding downstream 36128 7118582 ~ 7125259 (+)
LOC122352572 LOC107552014,LOC107720569,LOC107720570 coding downstream 45150 7127604 ~ 7130592 (+)
LOC122352559 pcdh1a3,pcdh1a4,pcdh1a6,LOC107586180,LOC107742396,LOC107677970,LOC107742395,LOC107678002 coding downstream 48282 7130736 ~ 7133928 (+)
G75371 LOC107564544,LOC107678039,LOC107708655,LOC107586135,LOC107720713,LOC108437809,LOC105905969 non-coding upstream 316916 6734932 ~ 6759645 (+)
G75361 NA non-coding upstream 420651 6644036 ~ 6655910 (+)
G75236 LOC107678050 non-coding upstream 496632 6578172 ~ 6579929 (+)
G75230 NA non-coding upstream 532316 6542088 ~ 6544245 (+)
LOC122352660 NA non-coding upstream 886121 6186147 ~ 6190440 (+)
G75498 NA non-coding downstream 282963 7365417 ~ 7366605 (+)
G75513 NA non-coding downstream 315591 7398045 ~ 7399363 (+)
G75514 NA non-coding downstream 316974 7399428 ~ 7400033 (+)
G75516 NA non-coding downstream 319679 7402133 ~ 7408121 (+)
G75502 NA non-coding downstream 405021 7487475 ~ 7488567 (+)
trpc7a trpc7a,LOC107677994,LOC107720592,LOC107552051,LOC105905985,LOC108437819,LOC106603261 other upstream 82940 6981492 ~ 6993621 (+)
LOC122352486 LOC107720590,LOC107677990,LOC107553711,LOC107705075,LOC107586209 other upstream 604454 6454065 ~ 6472107 (+)
lrrtm4l1 lrrtm4l1,LOC107730422,LOC107553720,LOC107687748,LOC107720738,LOC107561403 other upstream 986974 6061191 ~ 6089587 (+)
G75062 LOC107744182,LOC107678054,LOC107567441,LOC107713390,LOC107687817 other upstream 1514476 5560651 ~ 5562085 (+)
ccl19b LOC107744181,LOC107677997,LOC107567444,LOC107555521,LOC107713300,LOC107688602,LOC107713257 other upstream 1576173 5498647 ~ 5500388 (+)
G75422 pcdh1a6,LOC107677970,LOC107552011,LOC107677969,LOC107742394,LOC107720565,LOC107586182,LOC107742396 other downstream 59839 7142293 ~ 7150581 (+)
LOC122352414 pcdh1a3,zgc:123181,pcdh1a4,LOC107742396,LOC107552012,LOC107586180,LOC107720566,LOC107720564 other downstream 71132 7153586 ~ 7163223 (+)
LOC122353118 pcdh1g1,pcdh1g2,pcdh1g3,pcdh1gb2,pcdh1g9,pcdh1g11,pcdh1gb9,pcdh1g18,pcdh1g33,pcdh1gc5,pcdh1g32,LOC107677968,LOC107742392,LOC107688304,LOC107720705,LOC107552007,LOC107677966,LOC107586189,LOC107742391,LOC107688284,LOC107688294,LOC107586188,LOC107720703,LOC107677965,LOC107586192,LOC107742390,LOC107586191,LOC107552005,LOC107720701,LOC107688268,LOC108191536,LOC107552066,LOC107586138,LOC107687322,LOC107677986,LOC107677985,LOC103911742,LOC107677983,LOC107742370 other downstream 115083 7197537 ~ 7340195 (+)
G75496 LOC107720595,LOC107677995 other downstream 278530 7360984 ~ 7365331 (+)
si:ch211-237l4.6 NA other downstream 735356 7817810 ~ 7822518 (+)

Expression


Co-expression Network