ppp2cb (ppp2cb,LOC107758729,LOC105021738)


Basic Information

Item Value
gene id ppp2cb
gene name ppp2cb,LOC107758729,LOC105021738
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 4891590 ~ 4906268 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250036.1
TGCGCAGCGGCCATTACACAGCAACGCGTTTGTGAGGAAGGTCGGGAGCGCGTCTAGTCAACGGAAAAATCGCCAATCGCACACCGCGGACACCGTCAAAAGACATATCTCAGTCACCGTGAAGTGTAGATGAAAAATAGCTGTCATACGTCGTTTCGTGTTTGATGAGCTGATATCCAAGTTTAACGGCGGTGTTTGGTGGTTGTGTTTTGTGTCGGCCCAGCGCAGCTCTCGTTTAATTACCGGAGAATCGGCGAGAATTACCGCAGCATCGCGCCGGTGATGGATGATAAAGCGTTCACCAAAGAATTAGACCAATGGGTCGAACAGCTAAACGAGTGCAAACAGCTTACCGAGAACCAAGTGAGAACACTCTGCGAGAAGGCTAAAGAGATTCTCACTAAAGAGTCCAATGTGCAGGAGGTGCGGTGCCCTGTCACAGTGTGTGGAGATGTGCATGGCCAGTTTCATGATCTAATGGAGCTCTTCAGAATTGGAGGAAAGTCACCTGACACTAACTACCTGTTTATGGGCGACTATGTAGACAGAGGATATTACTCGGTGGAAACAGTCTCACTTCTTGTTGCACTAAAGGTTCGCTACCCAGAACGCATCACGATATTGCGGGGAAACCACGAGAGCAGACAGATCACACAAGTTTACGGCTTCTATGACGAGTGCTTGAGGAAATATGGCAATGCAAACGTCTGGAAATATTTCACAGACCTGTTTGACTACCTACCCCTCACAGCTCTGGTGGATGGGCAGATCTTCTGTCTGCACGGTGGCCTCTCTCCATCCATAGACACACTGGATCATATTCGTGCACTGGATCGTCTGCAGGAGGTGCCACATGAGGGACCCATGTGTGATCTGCTGTGGTCAGATCCTGATGATCGTGGTGGTTGGGGAATCTCTCCACGTGGAGCCGGTTACACGTTTGGACAGGACATTTCTGAGACCTTCAACCACGCTAACGGACTCACGCTGGTGTCTCGTGCGCATCAGCTGGTCATGGAGggatacAACTGGTGTCATGATAGGAATGTTGTCACTATCTTCAGTGCCCCAAACTACTGCTATCGCTGTGGAAATCAGGCAGCCATTATGGAACTGGACGATACTCTTAAATATTCGTTCCTTCAGTTTGATCCAGCTCCTCGACGTGGAGAGCCTCATGTCACCCGCCGCACCCCTGACTACTTCCTATAAGCAAGCACTAGCCTGCCATGAAAGAACCCTAAAAGCAAGTGAAAAAATTGACATCTATACATCTGTTCATccaatatgtatataaaataggGGAAATATTCTGACACAACAACACTAACATGGACCAAAATGTGCCATACAAGCATTTAATGCCCAAATCTGATCGCTCTGTCTCAGTACTGCAACAAAGTGTCTCGTTTTAGCCTATAGTACAAATTGCCTGCTGTATACAATGAATAGAGATGTTCCCTTTGTTCTTCAATTGtaaatgagttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagcagatgtgGCTAGCTTTCTCTCTCACAGTATCACTGGATAGGAAAAGTCCTTTAAGTTGGCAATGCCAGGCATGTGAaaaatggtaacattttatACAAGTGCACAAGCTGACATCCTTTCCTTatattcaccaaaaaaaagtcCTATTGGAAAGGAATGTTGAAACCGAAGGACGTGCCTCTTCCATTCTGGGAGTGTACACAAGTGTATATGGACTTTATCTGACTGTCCCTCTTTGTCTAAtcttactattttatttacttttgtgttaCCTGTTTTCAGTGTATTTGTCAAAAAGTGATAGCCTCTTCTTTGCTGTATTTGAActaataaactacttttaatcGCAAA

Function

symbol description
ppp2cb Predicted to enable protein serine phosphatase activity and protein threonine phosphatase activity. Orthologous to human PPP2CB (protein phosphatase 2 catalytic subunit beta).

NR:

description
PREDICTED: serine/threonine-protein phosphatase 2A catalytic subunit beta isoform isoform X1

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250036.1 True 1877 mRNA 0.45 7 4891590 4906268

Neighbor

gene id symbol gene type direction distance location
LOC122353166 tex15,LOC107715856 coding upstream 4021 4866714 ~ 4887569 (+)
purg purg,LOC107715864,LOC107758727,LOC107564122,LOC107682501,LOC107102481 coding upstream 15929 4869185 ~ 4875661 (+)
fut10 fut10,LOC107681479,LOC107564112,LOC107740796 coding upstream 541890 4345213 ~ 4349700 (+)
psd3l LOC107564111,LOC107715858,LOC107665472,LOC107740791,LOC107681482,LOC108427269 coding upstream 555149 4258520 ~ 4336441 (+)
slc38a9 slc38a9,LOC107564110,LOC107670042,LOC107740785,LOC107715861,LOC107566906,LOC107665474 coding upstream 650186 4231670 ~ 4241404 (+)
hint1 hint1,LOC107665476,LOC107684867 coding downstream 6203 4912471 ~ 4914615 (+)
LOC122352870 NA coding downstream 125886 5032154 ~ 5034484 (+)
LOC122352868 LOC107587995,LOC107711162,LOC107672432,LOC107757375,LOC107587996 coding downstream 128765 5035033 ~ 5038505 (+)
LOC122352867 LOC107711243,LOC107672495,LOC107587952,LOC107757372,LOC107567248,LOC107670491 coding downstream 132578 5038846 ~ 5045538 (+)
si:dkey-210j14.3 LOC107672496,LOC107757375,LOC107711244,LOC107711245 coding downstream 139983 5046251 ~ 5049149 (+)
G74824 NA non-coding upstream 68628 4822388 ~ 4822962 (+)
G74814 NA non-coding upstream 211358 4679694 ~ 4680232 (+)
G74712 NA non-coding upstream 268824 4622557 ~ 4622766 (+)
G74704 NA non-coding upstream 295507 4595323 ~ 4596083 (+)
G74657 NA non-coding upstream 354217 4534600 ~ 4537373 (+)
G74868 NA non-coding downstream 21227 4927495 ~ 4927722 (+)
G74870 NA non-coding downstream 21611 4927879 ~ 4928139 (+)
G74871 NA non-coding downstream 34730 4940998 ~ 4941302 (+)
G74873 NA non-coding downstream 43281 4949549 ~ 4949857 (+)
G74882 NA non-coding downstream 94414 5000682 ~ 5002442 (+)
LOC122352783 tln1,LOC107715875,LOC107670039,LOC107568645,LOC107702558 other upstream 362588 4481267 ~ 4529002 (+)
LOC122352388 tln1,LOC107715875,LOC107670039,LOC107568645,LOC107702558,LOC107737170 other upstream 771143 4013034 ~ 4120447 (+)
cdc42se2 cdc42se2 other upstream 1196994 3669003 ~ 3694596 (+)
zgc:113274 LOC107715885,LOC107702590,LOC107720383,LOC107560406 other upstream 1223584 3663912 ~ 3668006 (+)
si:ch73-234b20.5 si:ch73-234b20.5,LOC107702596,LOC107558257,LOC107653492,LOC107573851,LOC107732123,LOC108440734 other upstream 1287374 3596606 ~ 3604216 (+)
LOC122352404 LOC107670527,LOC107567246,LOC107587997,LOC107757377,LOC107711240,LOC107672489 other downstream 210598 5116866 ~ 5123373 (+)
LOC122352567 ywhah,LOC107562560,LOC107744159,LOC107713377,LOC107555530,LOC107688000 other downstream 332011 5238279 ~ 5250137 (+)
G74965 NA other downstream 350570 5256838 ~ 5258823 (+)
ccl19b LOC107744181,LOC107677997,LOC107567444,LOC107555521,LOC107713300,LOC107688602,LOC107713257 other downstream 592379 5498647 ~ 5500388 (+)
G75062 LOC107744182,LOC107678054,LOC107567441,LOC107713390,LOC107687817 other downstream 654383 5560651 ~ 5562085 (+)

Expression


Co-expression Network