tlx3b (tlx3b,LOC107742409,LOC107586149,LOC107676002,LOC105024610,LOC107552047)


Basic Information

Item Value
gene id tlx3b
gene name tlx3b,LOC107742409,LOC107586149,LOC107676002,LOC105024610,LOC107552047
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7490561 ~ 7496338 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250039.1
AAATTAACATGGTTTATGAAAATAAGCCagaatttaattattatcatcatcagtaCCCATGTTGTATTTTGTCCTGAAGCGATTCATATATATATCTcgactgcaaataaataaaatggatattttaataaagcCGAGAACGAGTCTAAAGTTGATTGACATATTAGAAAAAAAGGTTGAGGGCAGCTTTGAGGTCAAACGCACTCCTCCAGTGGCTTTAGGcgatatataaattacatttttttttccttaaaacgCGAATTGATAATATGCGTTTCTGATTTTAATACAAGCTGCGCCGATCAGAGATTCGAGATCATTATTACATTGTTAGTCATCTATTTATACATTCCTTATCTGATGAAATTAGGCTAACTACAAACTACTTTTCCCGCACAAAAGGTCCATATGGTAAATAAGACAATTGCTGAGCGCTTTATTTTCCACGTGAGGCCACGGCAGAATCTCTAATAAATACTCAAGTATTTAAAAAGCCAGTGATGACGTCCCGATGTCAGCATGTCCGTAATAAAGAGATACTTGACCGATACAGAAATTGGGGACTAAACGATctgcattttaaagaatgatGTCACAAAACGCTTTATGTATTTTGACTTGTAACAAAACGAAAGCCAATAAGGAGAGGGAGATTTAGCGCTGTCCAATCAGAGAAGAGAACAGCCCGACGAGTTCCGCGCAGGGATCcagtggagagagagagtgccAGAAATCTGCCAAGTCCTCGTGCCAAAAACTTTTCACCCACAGACGAATGCGTCCAAGTCGTCCTAAGTCAAGAATTGAATATCGAGGAGTAATACATCAAAAAGTAGCTATTACTAGGATTCCCTCAGTCATAGAGAGTTTTCCATAGTGCAGTTCCAGGGCAGTCCGAAATTGTCTGTGGAATAAACTCACTGGAAAGCTTCGGGAGGTGAGGATGGACCGAGCCCCAAGCTCCAGCCCAAGCGGCACCAGTCAAACATCACAACCTGCCCAACACGAACCCATCAGCTTCGGCATCGACCAGATTCTCAGCGGCACCGATCAAGAGCCACAGCAGAACTCGAGCAGGAATAACCCGGAGAGCAGCGCGAGCGCGAGCGGAGGCGGTTACCACCTCGGCAGCCCGACGGGAGCGAGCGCGACGCCGTACACGACACTAACCGGCACTTTTCACGGCATCGCGGCTCCGTACGAGGAGTCCGGTCCGTACGGAGTGAACTTGACCCTTGCACCCGGAGGAGTGATTAGGGTCCCGGCTCACAGGCCCCTGGCCGCGGCCGTGCCTCCACCCATGGCCAGCGCGGTCCCCGGTCTTGGGAGCCTCAGTTTTCCCTGGATGGAGAGCAGTCAGCGCTTCGCAAAAGACAGGTTTGCAGCAGCCCTGACACCTTTCACTGTGGCTCGGCGCATCGGTCACCCGTACCAGAACCGCACGCCGCCTAAGAGAAAGAAGCCCCGCACGTCTTTCTCCCGAGTGCAGATCTGTGAGCTGGAGAAGCGCTTCCACAGACAAAAATACCTGGCCAGCGCTGAACGGGCAGCTTTGGCTAAAACTCTGAAAATGACAGACGCCCAGGTCAAAACCTGGTTTCAGAACCGCAGGACCAAGTGGAGACGGCAGACGGCGGAAGAGAGGGAGGCAGAGCGTCAGCAGGCCAACCGGCTGATGATTCAGCTCCAGCACGATGCTTTCCAGAAGTCTTTGACCGATTCAGTTCCATCGGACCCGCTCTGCATCCACAACTCGTCGCTGTTCGCCCTGCAGAACCTGCAGCCTTGGGCGAGCGAGGAGAGCGGGAAGCTCGGAGGAGTGACTGCGCTCGTATGAGGGCCGCGACTCAAGAAGCGATTGACATTCTCCTTTTTGATGGACCGGGACGCCGGTTGATCTCGTCTCCGTCCCAAAAGACTGTTCCATTCCACAAAAAAAGCGAGGAGCTGACACCGGCCGTCCAACAGTGAGCAAACCCATGCAAAATAAAGCGGTTCTGCGTCGTGCGAGGCTCTGCAGAATAAACGAAGTCTGTTTTCTCTGCGTCCAGAGACTTTTATCCCCATTAGGGTCAGTTTCATTGACAAAGCGACTTTGTAGAATGGATCGGGGGCCACCTCAGCTGACCCTTTTACAGATCCTCTGATCTTCTCCTCCATCCTTTCATTTGTCCTTCTGCCCCCCCCCCACCCTTGTGTAGTTTCTCCTCCACTCAAGAGCTGTAGAATACAGGATTAATGCAGAAGAGGGAAGTAAggatgaattaattatttataatgcgAGTTGCACGACCTAATATGCCCCCAATCTGGCTATTTGCGAAAATAAATGGACACGAAGACGCACTTTAGCCTTCCTGTGTCTGTCGGCGGTTCGAAAGCTAGTTATTTTATGAAACTACGCCCTGATCATTTGAGAAACCGCACGAAGCGTTCAAAAGAAAGGCGTACGGCCTCGTATAGGGCGGTTGCAATTGATTTGATCGGGTTAGATTTATTCAGCAGCGACTCCAAACGCAGCTCAGAAACTCTTCTCAGAATCACGCTTCGATGGGCGAATGCTGTGGGTTTGTTAGATGATGTAGGCGCGCCGTTGCATCCCAAACTCTGTATTATACTTTGTATTtgataaatatgtaaatagcaaacaaaaaaagtaataaacattCTGTTTTGGCATTAACACAAAAGGTGTGCTTTGC

Function

symbol description
tlx3b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in animal organ development and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in cranial ganglion; neurons; and trigeminal placode. Orthologous to human TLX3 (T cell leukemia homeobox 3).

NR:

description
T-cell leukemia homeobox protein 3

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K15607 TLX3, HOX11L2; T-cell leukemia homeobox protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250039.1 True 2702 mRNA 0.48 4 7490561 7496338

Neighbor

gene id symbol gene type direction distance location
parp14rs4 LOC107720697,LOC107552062,LOC107678011,LOC107552063,LOC107678013,LOC107677959,LOC107742382 coding downstream 48737 7427836 ~ 7441824 (-)
LOC122352681 NA coding downstream 64810 7415393 ~ 7425751 (-)
LOC122352679 LOC107720699,LOC107552063,LOC107742368,LOC107687282,LOC107586145,LOC107678013 coding downstream 76258 7390170 ~ 7414303 (-)
fgf18b fgf18b,LOC107552074,LOC107742373,LOC107687415,LOC108437818 coding downstream 388481 7094645 ~ 7102080 (-)
LOC122353004 LOC107552052,LOC107677992 coding downstream 430800 7057711 ~ 7059761 (-)
ugt5g2 ugt5g2,LOC107678052,LOC107552046,LOC107742408 coding upstream 15386 7511724 ~ 7514061 (-)
ponzr10 LOC107552045,LOC107742363 coding upstream 18313 7514651 ~ 7519121 (-)
LOC122352925 LOC107551999,LOC107677957 coding upstream 23261 7519599 ~ 7523134 (-)
LOC122352928 LOC107675999,LOC107720693,LOC107677996,LOC107552059 coding upstream 34807 7531145 ~ 7533022 (-)
cldn7b cldn7b,LOC107586151,LOC107676017,LOC107678043,LOC107720692,LOC107552057 coding upstream 42942 7539280 ~ 7544064 (-)
G75549 NA non-coding downstream 1994 7487473 ~ 7488567 (-)
G75548 NA non-coding downstream 3451 7486212 ~ 7487110 (-)
G75537 NA non-coding downstream 38510 7450667 ~ 7452051 (-)
G75533 NA non-coding downstream 118643 7370932 ~ 7371918 (-)
G75532 LOC107742369,LOC107687312,LOC107586143,LOC107720700,LOC107552065,LOC107682917,LOC107677962 non-coding downstream 120492 7366811 ~ 7370069 (-)
G75633 NA non-coding upstream 112802 7609140 ~ 7616184 (-)
G75654 NA non-coding upstream 191356 7687694 ~ 7687973 (-)
G75666 NA non-coding upstream 264495 7760833 ~ 7761098 (-)
G75667 NA non-coding upstream 265187 7761525 ~ 7763853 (-)
G75749 NA non-coding upstream 600968 8097306 ~ 8099806 (-)
G75454 LOC107552069,LOC107678002,LOC107586137,LOC107687386,LOC107742371,LOC108437806 other downstream 309740 7177324 ~ 7180821 (-)
sprn2 LOC107578968,LOC107720715 other downstream 859373 6628425 ~ 6631188 (-)
si:ch211-113d22.2 si:ch211-113d22.2,LOC107677989,LOC107705073,LOC107586211,LOC107688532 other downstream 949588 6538122 ~ 6540973 (-)
LOC122352369 colgalt1,LOC107672476,LOC107711180,LOC107757371,LOC107670492,LOC107567242,LOC108429625,LOC107587993 other downstream 2462048 5019307 ~ 5028513 (-)
LOC122352741 diras2,LOC107560410,LOC107736992,LOC107702570,LOC107558266,LOC107715878,LOC107670053 other downstream 3577819 3905614 ~ 3912742 (-)
LOC122352929 LOC107675999,LOC107677996,LOC107552059,LOC107720693 other upstream 27856 7524194 ~ 7528558 (-)
G75562 LOC107675999,LOC107720693,LOC107677996,LOC107552059 other upstream 34523 7530861 ~ 7544090 (-)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other upstream 354683 7851021 ~ 7859714 (-)
trnal-aag_32 NA other upstream 363884 7860222 ~ 7860303 (-)
trnal-uag_2 NA other upstream 365947 7862285 ~ 7862366 (-)

Expression


Co-expression Network