LOC122352586 (LOC107552073,LOC107720710,LOC107586140,LOC107688350)


Basic Information

Item Value
gene id LOC122352586
gene name LOC107552073,LOC107720710,LOC107586140,LOC107688350
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7113403 ~ 7117973 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250041.1
AAAAAGCAAACCTTAATTGATATCGTTAATTAATcgttttgaaacaaaatgtttctgagcaaaaaagGAAGGCGTAATATAAAAACGAGTGTGTGGCATTAACTGCGACTGCTGTCGTGAGGCACCTCTCCTCTCCGACACACAGGTCCCATTCCACCTCCACCCCTTCCGGCTCTCTCATCCAAAcgcactcacactctctcactccaGTGCCATTGGCCAAAGGCGCGCGCTCCAGCGCCGGAGTACGAGGTTATCATTAGCGCGCTCGTTCTCTCTCCAAATGTTGCTGTGCGTTCGGGTGGGTTTTTGTCCACCGTGTTAAAGCTTAAATGAACGTGCGGTTTGTTCGTTTGAAGGCACGCACTGAGAATGGAGCTGTGGATGCGGGCATGGCAGGTATCCTGCCTGGCGCTCGCGCTGCTGGATGCAGTTCTAGCGCAGATTCGTTACGCGATCTCGGAGGAACTGGAGCACGGGGCTTTTGTTGGAAATATCGCGGAGGATCTGGGACTGGACACCGGCAAGCTCTCAATCCGACGGTTTAGAATAGTCTCGGGGGCGAAACGGCAGTATTTGGAGGTGAATTTAGAAAACGGAGTTCTGTTTGTTAACGAAAGAATCGATCGAGAAGAGTTGTGCGAACAAAATCCATATTGTTCGTTCCATCTCCAGGTCGTGATCGAAAACCCGTTAGAACTGTATAGAGTGGAAGTCGAAATATTAGATGTCAACGACAACTCTCCGGTTTTCCCGTGGAACGAGTTCAACCTGGATATATCCGAATCGGCCGCTCCCGGATCGCGCTTCCCGCTGGAAAGCGCGCAGGACCTGGACGTGGGTGATAACTCTCTGCGCTCGTACCTGCTGAGCGTGAACGAGCACTTTGTCCTGGATGTCCAGACGCGCAGCGACGGCAGCAAATTCGCAGAACTGATCCTCGAAAGTCCGCTGGACCGGGAGCAGCAGAAGACTCACCTGATGGTTCTCACGGCGGTGGACGGAGGCTCTCCGGAGAGATCGGGCACCGCGCAAATAAACGTCACCGTGCTGGACGCCAACGACAACGCGCCCGTGTTCGATCAGAACTTTTATAAAGTGAGGCTGGCTGAAAACGCGCCGAGGGGCACGGTCGTGATCAAACTGAACGCCAGCGATTTAGACGAAGGGCCCAATGGAGAGATCGCGTACTCTTTTAGCGGCCACGCTCCGATGAGAGTGCGCGAGCTGTTCGGCGTGGATTCCCGCACTGGAGAAATCAAAGTAAAAGGACTCGTAGATTACGAAAAGGCGCGGATGCACGAGATTTATGTGCAAGCCAAAGACAAGGGGCCGTCGGCGGTGGCGGTGCACTGCAAAGTTATGGTTAACGTCGTAGACGTCAACGACAACATTCCAGAAGTGATTCTTACATCCGTATCCACGCCGGTTCAAGAAGACGCGCCACCCGGGACGGTGATAGCAGTCATTAGCGTGATGGATAAGGACTCTGGGGAAAACGGAAATGTTGATTGCGAAATCCCTCATCACGTTCCCTTTCAGCTGCATTCctcttttaaaaactattacacGCTAGTCACGTGTGATTTTCTGGACAGAGAATCCGTTTCGGAGTATAACGTTACTCTCACGGCGCGCGATATGGGCTCGCCGCCGCTTTTCACGAGGAAAACGATTTTAGTGCAAGTGTCTGACATCAACGACAACGCGCCGCGTTTCAGACAGCCCTCGTACACCGTCTACCTGACCGAAAACAACGCGCCGGGAGCCTCCATTTGCGCCATCACCGCTCAAGACGCAGACGCGGATCAGAATTCCTACTTATCCTACTCCATTCTAGAAAACGACATCCACGGGATGCCGGTGTCCACCTACGTGTCCATCAACTCAGACAACGGTAACATTTACGCGCTGCGCTCTTTCGACCACGAGCAGCTCAGGAACTTTCAGATCGCGGTTCAAGCCGAAGACGCCGGTTTTCCGCCCCTCCGCGCGAACGTAACGGTCAACGTGTTTGTTTTGGACCAGAACGACAACCCTCCGGTCGTTGTGTCCCCGCTGCCCGAGAACGACACCGCGGCGGTCGTAGCTGTCCCCAGAAACGCCGACGCCGGGTACCTAGTGGCTAAAATCACCGCCATGGACGCGGACGCCGGGCAAAACTCGCGTCTCTTTTACGAAGTCCTCCAAGCTACGGATCTCAGTCTGTTCAGCGTCGCTCTCTACACCGGGGAGATCAGGACAATACGCCGGCTGATGGACAACGACCCCAGGAGACAGAGGCTGGTGGTTTTGGTCAAGGACAACGGTCAGCCGCCGCTCTCGGCCACGGCCTCCGTCATGTTGTCAGTTGTTGACAGCGTGCCAGAATCCTCGCCTGATTTTGGTGACCTCGCGCTCAGCCCCCAGTCCCGGTCAAACCTCACGCTGTATTTAATCGTATCTCTGGGCGCCGTTTCGTTCGCGTTTCTCGTGGCTATTATCGTCCTGGCTACAATTAAGGGACTGAAGGACGGGAGCTCGTGCTGCGGATTTCGCTCTGAAGACCCCGCCACCGACGTCGTTAAAAAGTCCAACTTGAACATCCACCTGTCTCCGGGGTCAAAGGGacccaagcagtgcgtggaagTGAACGGGAGCAACCCGGTGGGTCAAAACTACTGCTATAAGATGTGTCTGACTCCAGAGTCGTCTAGAAGCGACTTCATGTTCCTCAAGCCGTGCAGCCCCGCGGGAACGTCTTCCCGaaacaatataaaagaaatagaaaacaaaactttgACCTGGAGTCCAGCCAGCCACAGTCTCGGCGCCAGGAACGCGGCGACCTCTCCGAACGAACTCAAACAAGGAAACAAAGACCAAACCTTGACCAAGAACCAGCTCAATTATACATATAAAGGCCATACTCCGATAAACACAGGTAGGACGCTGCAGCGCAGACTGATTCAGGACTCAGACTACTATGCTTACACATCTGTCCCGCAGTACTGGACCTGGGGCAATCACGTGCACGACTATAAGACGTCGTCTAAGGCTGGAGGTTTTCCAAACCGTTCGTGGACACGTTACAATCCGCAGGATTCAATTCAACCCCCACCGGACTATCAGCATAATGTTTACATTCCCGGAACACCTTCGGCCCTCTGCACGCTCAAACTGGCAAACAACGTGGACATTGAAGCCTGCAACTCATTCTCAACCTTcggcaaaaagaaaaagccaaACATTAACAATCAAGAGGATGCAGTAATAACCAACgattttttcaaatgattttccCTGTAGATCGCTTCCTGTGTAcagctgtgtatatttaagttgGATTATGTGTACTATATGATTTGTCAACAACAGGACTTAAAAGTGCtcataatcatttcatttttttttttttttttttttttttagttatttgcaGTGTTTATGGCCCCGTACTGATAAGGATATGGGTTGTA

Function

NR:

description
PREDICTED: protocadherin-10-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250041.1 True 3458 mRNA 0.52 4 7113403 7117973

Neighbor

gene id symbol gene type direction distance location
fbxw11b fbxw11b,LOC107687420,LOC107678030,LOC107720711 coding upstream 18827 7082972 ~ 7094576 (+)
LOC122352576 etf1b,etf1,LOC107552075,LOC107678033,LOC108437808 coding upstream 30949 7076561 ~ 7082454 (+)
LOC122352574 trpc7a,LOC107677994,LOC107720592,LOC107552051,LOC108437819,LOC105905985,LOC106603261 coding upstream 37025 7063661 ~ 7076378 (+)
prnpb NA coding upstream 486805 6625432 ~ 6626598 (+)
si:dkey-81j8.6 LOC107720718,LOC107678005,LOC107572716,LOC107708650 coding upstream 489189 6614030 ~ 6624214 (+)
LOC122352453 LOC107720709,LOC107552072,LOC107678037,LOC107687397,LOC107586142,LOC100006797 coding downstream 609 7118582 ~ 7125259 (+)
LOC122352572 LOC107552014,LOC107720569,LOC107720570 coding downstream 9631 7127604 ~ 7130592 (+)
LOC122352559 pcdh1a3,pcdh1a4,pcdh1a6,LOC107586180,LOC107742396,LOC107677970,LOC107742395,LOC107678002 coding downstream 12763 7130736 ~ 7133928 (+)
LOC122352413 LOC107720567,LOC107552013,LOC107736721,LOC107688341 coding downstream 16501 7134474 ~ 7137426 (+)
LOC122353133 pcdh1a3,pcdh1a4,LOC107742396,LOC107586180,LOC107552012 coding downstream 20500 7138473 ~ 7140546 (+)
G75371 LOC107564544,LOC107678039,LOC107708655,LOC107586135,LOC107720713,LOC108437809,LOC105905969 non-coding upstream 353758 6734932 ~ 6759645 (+)
G75361 NA non-coding upstream 457493 6644036 ~ 6655910 (+)
G75236 LOC107678050 non-coding upstream 533474 6578172 ~ 6579929 (+)
G75230 NA non-coding upstream 569158 6542088 ~ 6544245 (+)
LOC122352660 NA non-coding upstream 922963 6186147 ~ 6190440 (+)
G75498 NA non-coding downstream 247444 7365417 ~ 7366605 (+)
G75513 NA non-coding downstream 280072 7398045 ~ 7399363 (+)
G75514 NA non-coding downstream 281455 7399428 ~ 7400033 (+)
G75516 NA non-coding downstream 284160 7402133 ~ 7408121 (+)
G75502 NA non-coding downstream 369502 7487475 ~ 7488567 (+)
trpc7a trpc7a,LOC107677994,LOC107720592,LOC107552051,LOC105905985,LOC108437819,LOC106603261 other upstream 119782 6981492 ~ 6993621 (+)
LOC122352486 LOC107720590,LOC107677990,LOC107553711,LOC107705075,LOC107586209 other upstream 641296 6454065 ~ 6472107 (+)
lrrtm4l1 lrrtm4l1,LOC107730422,LOC107553720,LOC107687748,LOC107720738,LOC107561403 other upstream 1023816 6061191 ~ 6089587 (+)
G75062 LOC107744182,LOC107678054,LOC107567441,LOC107713390,LOC107687817 other upstream 1551318 5560651 ~ 5562085 (+)
ccl19b LOC107744181,LOC107677997,LOC107567444,LOC107555521,LOC107713300,LOC107688602,LOC107713257 other upstream 1613015 5498647 ~ 5500388 (+)
G75422 pcdh1a6,LOC107677970,LOC107552011,LOC107677969,LOC107742394,LOC107720565,LOC107586182,LOC107742396 other downstream 24320 7142293 ~ 7150581 (+)
LOC122352414 pcdh1a3,zgc:123181,pcdh1a4,LOC107742396,LOC107552012,LOC107586180,LOC107720566,LOC107720564 other downstream 35613 7153586 ~ 7163223 (+)
LOC122353118 pcdh1g1,pcdh1g2,pcdh1g3,pcdh1gb2,pcdh1g9,pcdh1g11,pcdh1gb9,pcdh1g18,pcdh1g33,pcdh1gc5,pcdh1g32,LOC107677968,LOC107742392,LOC107688304,LOC107720705,LOC107552007,LOC107677966,LOC107586189,LOC107742391,LOC107688284,LOC107688294,LOC107586188,LOC107720703,LOC107677965,LOC107586192,LOC107742390,LOC107586191,LOC107552005,LOC107720701,LOC107688268,LOC108191536,LOC107552066,LOC107586138,LOC107687322,LOC107677986,LOC107677985,LOC103911742,LOC107677983,LOC107742370 other downstream 79564 7197537 ~ 7340195 (+)
G75496 LOC107720595,LOC107677995 other downstream 243011 7360984 ~ 7365331 (+)
si:ch211-237l4.6 NA other downstream 699837 7817810 ~ 7822518 (+)

Expression


Co-expression Network