sdr42e2 (sdr42e2,LOC107726803,LOC107654653,LOC107717482,LOC107552104,LOC106592406)


Basic Information

Item Value
gene id sdr42e2
gene name sdr42e2,LOC107726803,LOC107654653,LOC107717482,LOC107552104,LOC106592406
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 14554997 ~ 14568193 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250043.1
CAGCTGTGATTAAAAGGTATTTAGtgtaagaaaatgtataaatgttattGTATGCTTGCTTTTTATGCAGTACTATATAAGGCTGAACGATACCTTCAGGTAAAAAGAGCTTTTGTTTACCTTGATGGAAAGTTcgattttattaataaatataaaataaaaacaacagtgcCTATTGGAGGGtaattttacagtgaaaaacatTACCAGGATTACACAGAAAATTAATTTGACTTTTGAGAATTAATTTGAGATTTGAAAAGAGAGACGCGTAGGCTGCCATTGAAACAATCAGATCTGCTGGATTCTTAAAATGGACCCGCAGGCCCGCAAGTTGTTTAAAGCTAGTTTTCTGTGTTAATTTACTTGTCCATATTTGTCggtttttatttaactttccATTTAGGTAGGCTATTATTAAAAAGTGTGCGCGCGTTgtgctttttcttcttcttgtgaATGTTTGGCCAACAGGCTGCTGATTGGCTGCCGCGGGTTCGCGCGCGCTCGGTGTTTTACGGTAACGCGCTCAGGTGAGGCGCAGGTGATTGACAGATGAAGAACATCGTCAGAGACACCGGCGGGATGACGCGATGCACGCGCAGCTGACGGACACAGCACGCGCTTGATCAGTAACTGACAGACTGGACGCAGTGGAGGTATCTGAAGCCACGTGTGCATTATGAAGGAGAACAGGTCCTCGTGTCAGGTGGAGCAGCTGCCCTGTGCATGTCTGCTAGACTGCCACCGACCGACCCACACCCGCGGCGCCGCAGGGGCCCCGCCACGACACAGAGCCAACGGGGCCGTGGGGGCCTCGTGCAACAGTCCCAACTGCGTGGTGGCCGCCAGGCTGGAGGACCCAGAGCGGGGCCGGCACGGGGCCGGCAGGGTGCTGGTCACCGGAGGGGCCGGGTACTTCGGGTTCAGGCTGGGCCGGGCTCTGGCAGGCCAAGGGGCCACGGTTTTACTCCTGGACCTCCACAAGCCGCCCTGGGATCTCCCCGATGGAGCCGTCTTCCAGCAGatTGATATCCGGGATTATGATGCCCTGTATAAGATCTGTGCAGGAGTGGACGTCATTTATCACACTGCTTCCTATGGGATGTCAGGACCGGAACAGTTGAGGAGAAAGATGATTGAATCAGTGAATGTCGGCGGCACGAACAATATCATAAACGTCTGTACGGAGAGGGGCATCTCTAGACTCATCTACACCAGCACAGTCAATGTGGCGTTTGCTGGCCGACCCATCGAGGATGGAGATGAAGACTCGGTTCCCTGTGTGCAGCTGGACATGCACATAGACCATTACTCTAGGACCAAAGCTATCGCTGAACGCATGGTGCTCGCTGCCAACAGAAGATCAACAAAAGGTGGTGCTCTTCTTCACACATGTGTCCTGCGCCCCTCTGGTATCTACGGTCCTGAAGAGAGAAGACATTTACACAGAGTGATgGTGAATGTGGAGAGGCGGTTGTTCAGCTTTCGTTTTGGGGACCCTAATGCCAAGATGAACTGGGTCCATGTGGACAATCTTGTGACGGCTCACGTTTTAGCAGCAGAAGCGCTCACTGCAGATAAAGCTTATGTGGCGAGTGGACAGGTTTATTTCATCAATGATGGGGAGTCTGTCAATGTCTTTGAATGGTTGACACCTCTGTTCGAAAGACTGGGATACGGTCGCCCACTGATTCACCTTCCCGTGTCTCTGGTCTACTCAGCAGCAATTCTGATGGAGCGACTGCATGTGGCTCTGAGTCCTATAATGGAGATCCCTTTACTTCTGACAAGAAACGAGgtgagAAACATTGCCGTCAGTCACACCTTTAAAATCGAGAAGGCGCAGCGAGAACTGGGCTTCAGTCCTGAGAGATACAGCCTGAAAGACTCGGTGGATCAGTACCTGCGGAGCCGGCCGCCGCGCTCAGCTGCATCGTTACTGAACACAcgcttcctcttcctgctgCTCCTGCTGCTCCTGACGGGAGTCATCGCCCTCACGATCTGCCGCCAGTAAACACACCTCCACACTTCTCGTCGGTCCCTTGTAGGGTTTGAACGGGGGCTGGGCGATACAGTAAATTCAACATTGAGCatatcttttattttgacattatttttcgACAACGCTAtcgttaaattaattttaaactttGAGAGCGTTGcttctgtcatcaattactcatTTTAATGCCATCTCAAGAACCAGTGAGGTGTGTGAAACACACAAGCTTTATATTACGGGTTTTATGGTTTTgttggtgagtaaatgacgacagcattttctttttgagGTGAACTCTTGTCTCTTTAAGACAGATctacaataaaatacacttaaagTTATAACGTATACTTAGAAAAGTATGTATAAGTAACTGTCCACTTCagttaattcaataaaaattaagGTCTCTTAACTAGTCGCTTATTGGCATGCATACTAgaatattaaccatttattagttattaaacacatattaatgcctatCCCTaacacctaaacttaacaactaccttattaactattaataagctgcaaatgaagaatttattgagagaaaagtcgTGGTTAATAGTAAGTGCTTGCTCCCCGTTTTAAAGTTTTACCAAAACGATTAATTTGTGCCATcactaatataatttaaataaaaataacccgCCGTTATAATTAgtgtatattgttttatattcatgatgtatttaaaacaaagaaaaatgcaatgattattttaaattaatttaatcaggctatgtaatatataataggCTATAATGGCTGTTTGGTTCAGATGCCCgtttcatttattgaattatttatttgcttgctatATCGCTCACCCGTATTTTGAACCTACGGTGTTTCCGGATCAGATCATGAAGCACAGAGCTGCACCACCTCAGAAACAAAACCACTATGATTGTACGTAAAATACAGTCCTGATCAAATATAGGCGTGCGATGTGgtgtaaaactaaaatataaccTGCGGAGTATATCTTTGACCGTGACGAACAGAAGGAAATTGCTAGTAGtacgttttaaaatgatgtCTGTTAGTACCTAGACCAGAATTCACTTATTTATAGCTTCTTTTTTATCGAGTCTTCAGTCCGTGTAACTCTGAATCGTGATGTACATTAAATACGTTGTTTGTGTTAAAAGTTAGTGTTGGTGAATTCTACTATTAtggctttaatttatttaagttttttgcCCACGGTCTTCCATAAAACGAAGCGCGTGTATAGTCGCACTTCCTGAACGTGCGCACTGCAAAAGAAACGCTCGTTCATTTCGGTACGCGCCGTTTTTCATTCGCATTCCTTTCATTAGCGCTCTATTTACATGTTCATACCGAGTTGTATGTTGCTCGGATGAAGGCCTTTCGCCTCGACCTCGACTAAGAAGCAGTTTGAAAGAAAGCATATCAATACTGAGACAGAAAGAACCAGGGCAATGCTTACTCTACGCAAGTCATAGTCACTTCAacacactcttttttttagTATCACCCCATATGAACTGTGCCGGTGTGTGTTTGGGAACGAGtgagattgagtgtgtgtgtgtgctcacatCCGCTGAAGTATTACATTTGTGTCATAAGTGTTCATTTTTCGGTCAAACACAAGCAACTTCAACTCAGCTGACATATAAATAACAGAGTGGTGTGTTTGGAAATACTATAAATGTCCGGAGGGAGATTTTTTTGATGTGCAAAGCGAGGTTTGAAGCAACTAATATTTACCAGCGTCTTACACATTCGAAGCATTAAAGCAGTAAATGTATGCCATGCGAGGCATTCATGAACgccaatgaaatgttttatattccAAAGTGTACACCGACATAATCTTTCATTTTGCTTTGTACTACCAGCTGTTGTCTTTTAAGACTTTGCGCGCTGTTTTCCAGATATCTCTTAGGTTTGTGATGAGTTACAAATGTGACGCGAGATAGCTGTTCAGCAGTTATAAATGAACAAGTTGAATAAAATGTGCTGTGAACCCTCTTGCTATTAAAGCCTTGCATTTTCTTCAACGGTTTACTTAAACTTCGCCTCATTAAC
>XM_043250044.1
CAGACAGCTGTGATTAAAAGGTATTTAGtgtaagaaaatgtataaatgttattGTATGCTTGCTTTTTATGCAGTACTATATAAGGCTGAACGATACCTTCAGGTAAAAAGAGCTTTTGTTTACCTTGATGGAAAGTTcgattttattaataaatataaaataaaaacaacagtgcCTATTGGAGGGtaattttacagtgaaaaacatTACCAGGATTACACAGAAAATTAATTTGACTTTTGAGAATTAATTTGAGATTTGAAAAGAGAGACGCGTAGGCTGCCATTGAAACAATCAGATCTGCTGGATTCTTAAAATGGACCCGCAGGCCCGCAAGTTGTTTAAAGCTAGTTTTCTGTGTTAATTTACTTGTCCATATTTGTCggtttttatttaactttccATTTAGGTAGGCTATTATTAAAAAGTGTGCGCGCGTTgtgctttttcttcttcttgtgaATGTTTGGCCAACAGGCTGCTGATTGGCTGCCGCGGGTTCGCGCGCGCTCGGTGTTTTACGGTAACGCGCTCAGGTGAGGCGCAGGTGATTGACAGATGAAGAACATCGTCAGAGACACCGGCGGGATGACGCGATGCACGCGCAGCTGACGGACACAGCACGCGCTTGATCAGTAACTGACAGACTGGACGCAGTGGAGGTATCTGAAGCCACGTGTGCATTATGAAGGAGAACAGGTCCTCGTGTCAGGTGGAGCAGCTGCCCTGTGCATGTCTGCTAGACTGCCACCGACCGACCCACACCCGCGGCGCCGCAGGGGCCCCGCCACGACACAGAGCCAACGGGGCCGTGGGGGCCTCGTGCAACAGTCCCAACTGCGTGGTGGCCGCCAGGCTGGAGGACCCAGAGCGGGGCCGGCACGGGGCCGGCAGGGTGCTGGTCACCGGAGGGGCCGGGTACTTCGGGTTCAGGCTGGGCCGGGCTCTGGCAGGCCAAGGGGCCACGGTTTTACTCCTGGACCTCCACAAGCCGCCCTGGGATCTCCCCGATGGAGCCGTCTTCCAGCAGTTGAGGAGAAAGATGATTGAATCAGTGAATGTCGGCGGCACGAACAATATCATAAACGTCTGTACGGAGAGGGGCATCTCTAGACTCATCTACACCAGCACAGTCAATGTGGCGTTTGCTGGCCGACCCATCGAGGATGGAGATGAAGACTCGGTTCCCTGTGTGCAGCTGGACATGCACATAGACCATTACTCTAGGACCAAAGCTATCGCTGAACGCATGGTGCTCGCTGCCAACAGAAGATCAACAAAAGGTGGTGCTCTTCTTCACACATGTGTCCTGCGCCCCTCTGGTATCTACGGTCCTGAAGAGAGAAGACATTTACACAGAGTGATgGTGAATGTGGAGAGGCGGTTGTTCAGCTTTCGTTTTGGGGACCCTAATGCCAAGATGAACTGGGTCCATGTGGACAATCTTGTGACGGCTCACGTTTTAGCAGCAGAAGCGCTCACTGCAGATAAAGCTTATGTGGCGAGTGGACAGGTTTATTTCATCAATGATGGGGAGTCTGTCAATGTCTTTGAATGGTTGACACCTCTGTTCGAAAGACTGGGATACGGTCGCCCACTGATTCACCTTCCCGTGTCTCTGGTCTACTCAGCAGCAATTCTGATGGAGCGACTGCATGTGGCTCTGAGTCCTATAATGGAGATCCCTTTACTTCTGACAAGAAACGAGgtgagAAACATTGCCGTCAGTCACACCTTTAAAATCGAGAAGGCGCAGCGAGAACTGGGCTTCAGTCCTGAGAGATACAGCCTGAAAGACTCGGTGGATCAGTACCTGCGGAGCCGGCCGCCGCGCTCAGCTGCATCGTTACTGAACACAcgcttcctcttcctgctgCTCCTGCTGCTCCTGACGGGAGTCATCGCCCTCACGATCTGCCGCCAGTAAACACACCTCCACACTTCTCGTCGGTCCCTTGTAGGGTTTGAACGGGGGCTGGGCGATACAGTAAATTCAACATTGAGCatatcttttattttgacattatttttcgACAACGCTAtcgttaaattaattttaaactttGAGAGCGTTGcttctgtcatcaattactcatTTTAATGCCATCTCAAGAACCAGTGAGGTGTGTGAAACACACAAGCTTTATATTACGGGTTTTATGGTTTTgttggtgagtaaatgacgacagcattttctttttgagGTGAACTCTTGTCTCTTTAAGACAGATctacaataaaatacacttaaagTTATAACGTATACTTAGAAAAGTATGTATAAGTAACTGTCCACTTCagttaattcaataaaaattaagGTCTCTTAACTAGTCGCTTATTGGCATGCATACTAgaatattaaccatttattagttattaaacacatattaatgcctatCCCTaacacctaaacttaacaactaccttattaactattaataagctgcaaatgaagaatttattgagagaaaagtcgTGGTTAATAGTAAGTGCTTGCTCCCCGTTTTAAAGTTTTACCAAAACGATTAATTTGTGCCATcactaatataatttaaataaaaataacccgCCGTTATAATTAgtgtatattgttttatattcatgatgtatttaaaacaaagaaaaatgcaatgattattttaaattaatttaatcaggctatgtaatatataataggCTATAATGGCTGTTTGGTTCAGATGCCCgtttcatttattgaattatttatttgcttgctatATCGCTCACCCGTATTTTGAACCTACGGTGTTTCCGGATCAGATCATGAAGCACAGAGCTGCACCACCTCAGAAACAAAACCACTATGATTGTACGTAAAATACAGTCCTGATCAAATATAGGCGTGCGATGTGgtgtaaaactaaaatataaccTGCGGAGTATATCTTTGACCGTGACGAACAGAAGGAAATTGCTAGTAGtacgttttaaaatgatgtCTGTTAGTACCTAGACCAGAATTCACTTATTTATAGCTTCTTTTTTATCGAGTCTTCAGTCCGTGTAACTCTGAATCGTGATGTACATTAAATACGTTGTTTGTGTTAAAAGTTAGTGTTGGTGAATTCTACTATTAtggctttaatttatttaagttttttgcCCACGGTCTTCCATAAAACGAAGCGCGTGTATAGTCGCACTTCCTGAACGTGCGCACTGCAAAAGAAACGCTCGTTCATTTCGGTACGCGCCGTTTTTCATTCGCATTCCTTTCATTAGCGCTCTATTTACATGTTCATACCGAGTTGTATGTTGCTCGGATGAAGGCCTTTCGCCTCGACCTCGACTAAGAAGCAGTTTGAAAGAAAGCATATCAATACTGAGACAGAAAGAACCAGGGCAATGCTTACTCTACGCAAGTCATAGTCACTTCAacacactcttttttttagTATCACCCCATATGAACTGTGCCGGTGTGTGTTTGGGAACGAGtgagattgagtgtgtgtgtgtgctcacatCCGCTGAAGTATTACATTTGTGTCATAAGTGTTCATTTTTCGGTCAAACACAAGCAACTTCAACTCAGCTGACATATAAATAACAGAGTGGTGTGTTTGGAAATACTATAAATGTCCGGAGGGAGATTTTTTTGATGTGCAAAGCGAGGTTTGAAGCAACTAATATTTACCAGCGTCTTACACATTCGAAGCATTAAAGCAGTAAATGTATGCCATGCGAGGCATTCATGAACgccaatgaaatgttttatattccAAAGTGTACACCGACATAATCTTTCATTTTGCTTTGTACTACCAGCTGTTGTCTTTTAAGACTTTGCGCGCTGTTTTCCAGATATCTCTTAGGTTTGTGATGAGTTACAAATGTGACGCGAGATAGCTGTTCAGCAGTTATAAATGAACAAGTTGAATAAAATGTGCTGTGAACCCTCTTGCTATTAAAGCCTTGCATTTTCTTCAACGGTTTACTTAAACTTCGCCTCATTAACA

Function

symbol description
sdr42e2 Predicted to enable oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor. Predicted to act upstream of or within steroid biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SDR42E2 (short chain dehydrogenase/reductase family 42E, member 2).

NR:

description
PREDICTED: putative short-chain dehydrogenase/reductase family 42E member 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250043.1 True 4075 mRNA 0.44 12 14554998 14568189
XM_043250044.1 False 3984 mRNA 0.43 11 14554997 14568193

Neighbor

gene id symbol gene type direction distance location
mfsd13al zgc:171489,mfsd13b,LOC107726812,LOC107573382 coding downstream 8846 14541530 ~ 14546151 (-)
si:ch211-165g14.1 LOC107726816,LOC107573383,LOC107673826 coding downstream 14159 14532487 ~ 14540838 (-)
dhrs7ca LOC107758776,LOC107654658,LOC107552132 coding downstream 66463 14485329 ~ 14488534 (-)
LOC122352756 ift46 coding downstream 269915 14280933 ~ 14285082 (-)
LOC122352754 NA coding downstream 274109 14278117 ~ 14280888 (-)
mosmoa c16orf52.L,c17h16orf52,C20H16orf52,LOC108258941,LOC106518731,LOC102224510,LOC105910214 coding upstream 22826 14591019 ~ 14611223 (-)
LOC122352591 uqcrc2a,LOC107671252,LOC107717493,LOC107552131,LOC107674831 coding upstream 43608 14611801 ~ 14618610 (-)
si:ch211-256e16.3 si:ch211-256e16.3,LOC107674048,LOC107552129,LOC107717492,LOC108412900,LOC105898657,LOC108260968,LOC106601741 coding upstream 52793 14620986 ~ 14629074 (-)
LOC122352450 NA coding upstream 543219 15111412 ~ 15115448 (-)
LOC122352451 LOC106676183,LOC106674878 coding upstream 737342 15305535 ~ 15306408 (-)
G77514 NA non-coding downstream 57543 14495498 ~ 14497454 (-)
LOC122353010 NA non-coding downstream 89677 14460368 ~ 14465320 (-)
G77480 LOC107575404,LOC107692500,LOC107728752 non-coding downstream 129510 14424513 ~ 14425487 (-)
G77476 NA non-coding downstream 186442 14366281 ~ 14368555 (-)
G77472 NA non-coding downstream 193263 14361354 ~ 14361734 (-)
G77669 NA non-coding upstream 533956 15102149 ~ 15103569 (-)
G77672 NA non-coding upstream 570414 15138607 ~ 15139007 (-)
G77674 NA non-coding upstream 588156 15156349 ~ 15156591 (-)
G77676 NA non-coding upstream 591272 15159465 ~ 15159847 (-)
G77692 NA non-coding upstream 705720 15273913 ~ 15276004 (-)
im:6904045 NA other downstream 69705 14484799 ~ 14485292 (-)
LOC122353009 LOC107562038,LOC107562041 other downstream 73548 14467186 ~ 14481449 (-)
G77465 hyou1,LOC107691632,LOC107588517,LOC107747001,LOC107693979,LOC107577052 other downstream 211985 14340046 ~ 14343012 (-)
G77443 NA other downstream 290675 14234506 ~ 14264322 (-)
G77441 dlg1l,LOC107653521,LOC107705307,LOC107660320 other downstream 346991 14204416 ~ 14208006 (-)
vwa3a LOC107675622,LOC107552102,LOC107726804,LOC107717475 other upstream 137 14568330 ~ 14589899 (-)
G77671 NA other upstream 538944 15107137 ~ 15107752 (-)
LOC122352744 LOC107556605,LOC107709039,LOC107722845,LOC107690595,LOC107555077 other upstream 661776 15229969 ~ 15289672 (-)
G77702 NA other upstream 789492 15357685 ~ 15358232 (-)
npffr1l1 npffr1l1,LOC107658551,LOC105907118 other upstream 1324451 15892644 ~ 15897232 (-)

Expression


Co-expression Network