LOC122352591 (uqcrc2a,LOC107671252,LOC107717493,LOC107552131,LOC107674831)


Basic Information

Item Value
gene id LOC122352591
gene name uqcrc2a,LOC107671252,LOC107717493,LOC107552131,LOC107674831
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 14611801 ~ 14618610 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250047.1
GTCCATATATGGTGTGTCGTCGGGGCGCAGTGGATTGTGGGTAGGTTTTCGGATCGGCCATAACTGTCTTTCCCAGCGACTGAAGGAGAGAAGCGGAGTCATGACGGGGTTCAGAGGTTTCACTCATCTCTCCAGACGCTGTTATGCCGCTGCCGCCAGGAGGAGCGAGGCATTGACTGAACCTCTGGTCGCCCGAAATCTCGCAGCAGCGCCGTCCCTCCCTCCCCAGGACGTCCAGGTGTCCAAGCTTCCCAGCGGTCTTCTCATCGCCTCTCTGGAGAACTACTCTCCGGTCTCTAAAATCGGTGTGTTTGTGAAAGCCGGCAGCCGCTACGAGACTGCAGAAAACCTGGGCGTCACTCACATCCTGAGATTAGCGGGAAATCTGACCACTAAAGGTGCTTCGGCGTTCAGGATCTGTCGGGGTCTGGAGGCGGTGGGCGCCAGTTTGAgtgtgaCTTCATCGAGGGAACACATGGTCTATTCTCTGGACTATCTAAGGGATGATTTTGACGGCGTCATAGAGTACCTGATCAATGTGACCACCGCTCCTGACTTCAGACCCTGGGAGCTGTCTGACCTCTCGCAGAGGGTCAAGATAGACAAGGCCGTGGCGGACCAGAGCCCGCAGATAGGTGTTCTGGAGAAGCTGCACGAAGCTGCGTATAAGAACTCTTTATCCAACTCTCTGTACTGTTCAGACCACATGGTGGGGAAGTTTAGTGTTGATCATCTGCAACAGTTCTTCTCCAATAATTACACCAGCGGTAGAATGGCCCTCGTTGGATTAGGCGTCAGTCATGCTGCTCTGAAGAAGGTGGGCGAGCGGTTCAGTGTCCGTACAGGGACTGGTGCGGCGGGGGCTAAAGCCGTTTACCGCGGCGGTGAGCTGCGCGTGCAGAGCGGTGGATCTCTGGTTCATGCCCTGCTGGCGTGCGAAGGAGCCGCGGTGGGCTCGGCGGAGGCCGACGCCTTCAGCGTGCTGCAGAGGCTTCTGGGAGCAGGGCCGCATGTCAAGAGAGGATCCAACATCACCAGCAAACTCAGCCAGGGCATCGGCAAAGCCACCGCACAGCCCTTTGACGCCACGGCTTTCAGTGCTGCTTACTCGGACTCCGGCCTCTTCGGTGTGTACGCCATCTCGCAAGCGGACTCGGCCCGCGAGGTGATCGGTGCAGCCGTGGCACAGGTGACGGCTGTAGCTGAGGGAAGACTCACTGCAGAAGACCTCACCAGAGCCAAGAGCCAGCTGAAGACCGATTATCTGATGTCTTTGGAGAGCTCAGAAGGTCTGCTGGAGGAGCTGGGGGTTCAGGTTTTGAGCAGCGGCGCGTACAGCTCACCGCAGTCTGTGACGGAGAACATCGACTCGGTGACCTCCGGCGACGTTGTCAACgctGCAAAGAAGTTCGTAGAGAGCAAGAAGACCATGTCGTGTTGTGGACACCTGGCAAACACACCATTTGTTGATGAACTGTGAGAGAGAGTCCCAGTCTGCACACATTGTGCAGCTGCTTATCTGAGCGTAAAAACGTTATTAAACTTGTACGAATCCCTGATTGCCGCTgacagttgttgttttgttttggtcgGTTCATCGTGAAAGCCAATCTTTAATAAAGCTGCACTGGGAGCAGAGGGATCAGTTTCGTCCATTTCACTGTATATCCGATGtgctttcattaaaacaaatctaaCGGTGA

Function

symbol description
uqcrc2a Predicted to enable metal ion binding activity. Predicted to be active in mitochondrion. Is expressed in female organism. Human ortholog(s) of this gene implicated in mitochondrial complex III deficiency nuclear type 5. Orthologous to human UQCRC2 (ubiquinol-cytochrome c reductase core protein 2).

NR:

description
PREDICTED: cytochrome b-c1 complex subunit 2, mitochondrial-like

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01412 PMPCA, MAS2; mitochondrial-processing peptidase subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250047.1 True 1703 mRNA 0.55 14 14611801 14618610

Neighbor

gene id symbol gene type direction distance location
mosmoa c16orf52.L,c17h16orf52,C20H16orf52,LOC108258941,LOC106518731,LOC102224510,LOC105910214 coding downstream 578 14591019 ~ 14611223 (-)
sdr42e2 sdr42e2,LOC107726803,LOC107654653,LOC107717482,LOC107552104,LOC106592406 coding downstream 43608 14554997 ~ 14568193 (-)
mfsd13al zgc:171489,mfsd13b,LOC107726812,LOC107573382 coding downstream 65650 14541530 ~ 14546151 (-)
si:ch211-165g14.1 LOC107726816,LOC107573383,LOC107673826 coding downstream 70963 14532487 ~ 14540838 (-)
dhrs7ca LOC107758776,LOC107654658,LOC107552132 coding downstream 123267 14485329 ~ 14488534 (-)
si:ch211-256e16.3 si:ch211-256e16.3,LOC107674048,LOC107552129,LOC107717492,LOC108412900,LOC105898657,LOC108260968,LOC106601741 coding upstream 2376 14620986 ~ 14629074 (-)
LOC122352450 NA coding upstream 492802 15111412 ~ 15115448 (-)
LOC122352451 LOC106676183,LOC106674878 coding upstream 686925 15305535 ~ 15306408 (-)
LOC122352614 LOC107701908,LOC107729578,LOC107556598 coding upstream 689289 15307899 ~ 15315868 (-)
LOC122353145 LOC107701914,LOC108437168,LOC108277112,LOC105013038 coding upstream 698038 15316648 ~ 15341965 (-)
G77514 NA non-coding downstream 114347 14495498 ~ 14497454 (-)
LOC122353010 NA non-coding downstream 146481 14460368 ~ 14465320 (-)
G77480 LOC107575404,LOC107692500,LOC107728752 non-coding downstream 186314 14424513 ~ 14425487 (-)
G77476 NA non-coding downstream 243246 14366281 ~ 14368555 (-)
G77472 NA non-coding downstream 250067 14361354 ~ 14361734 (-)
G77669 NA non-coding upstream 483539 15102149 ~ 15103569 (-)
G77672 NA non-coding upstream 519997 15138607 ~ 15139007 (-)
G77674 NA non-coding upstream 537739 15156349 ~ 15156591 (-)
G77676 NA non-coding upstream 540855 15159465 ~ 15159847 (-)
G77692 NA non-coding upstream 655303 15273913 ~ 15276004 (-)
vwa3a LOC107675622,LOC107552102,LOC107726804,LOC107717475 other downstream 21902 14568330 ~ 14589899 (-)
im:6904045 NA other downstream 126509 14484799 ~ 14485292 (-)
LOC122353009 LOC107562038,LOC107562041 other downstream 130352 14467186 ~ 14481449 (-)
G77465 hyou1,LOC107691632,LOC107588517,LOC107747001,LOC107693979,LOC107577052 other downstream 268789 14340046 ~ 14343012 (-)
G77443 NA other downstream 347479 14234506 ~ 14264322 (-)
G77671 NA other upstream 488527 15107137 ~ 15107752 (-)
LOC122352744 LOC107556605,LOC107709039,LOC107722845,LOC107690595,LOC107555077 other upstream 611359 15229969 ~ 15289672 (-)
G77702 NA other upstream 739075 15357685 ~ 15358232 (-)
npffr1l1 npffr1l1,LOC107658551,LOC105907118 other upstream 1274034 15892644 ~ 15897232 (-)
LOC122352931 LOC107758671,LOC107689893 other upstream 1398061 16016671 ~ 16021774 (-)

Expression


Co-expression Network