med11 (med11,LOC107720680,LOC107702800,LOC107676028)


Basic Information

Item Value
gene id med11
gene name med11,LOC107720680,LOC107702800,LOC107676028
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7881885 ~ 7883525 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250075.1
TTTCGCGTTCTAAATATTTTGTTCTTCTGCGGCTTCCGTAGTTCGCTAAATGAAAGCGCTTTGTGTGCTAGTGACCGAATATCTCGTCGAATTTGGTTCACGGTGCATCAGTATAGATGTTGTGTGTTCGGAATGGCTAATGACAGACTCAGGGCGTTAGAAGATGTGGAGAAGGAGATAGCTTTAGTGCTTCAGAGCGCAgGAACGATTGTGCTGGAGCTTTCTAAAGAGAAGGCCAATGCCAGTTTATTAGACCGACAGCTGAACCAGTTTCAGACCTCCATCAACAGAGTTGAGAATGAACTAAGTGCACAGATCCGATATCtgacacagGTGGCAACAGGTCAGCCTCATGAGGGATCGACATATTCAGCCAGAAAGGACTGTCAGATGGCCCTAAACCGTGCCGAATATGCCCGGGTCAAACTGGGAGAGCTGGGACGCACCTGTGAGATAATGCTTGATCCACAGAcgtaaagaaatatttaatggaCTGTCGCATTGTAATATCTGCCAGCTGACTTCTTAAGTATTTACATGCATCAAAACCTTTCTGAATACCATCTACAAGTcaacaacaatttttatttttcataatccACAGACGTTttgtttaattacatatttttcccATCGTAATATCACTAAAACGTTTGTCTTATTAAGAAATGTCACATGTTTTCTTATGTTCTGTTATcactttttaaatagttatggcaaaataaaaacattttttcactaGCATTTTA
>XM_043250076.1
GCTCTGCCCGCACGTGACTCTTCCAGGGCTCCATGATCTGTGGCGAGTTCAGCTGGACTATTCACCTTTTTTAGACTCTTGTCTAATGTATTATTACAGCGTTCTCACATTAAATATTACGGTTGTGTGTTCGGAATGGCTAATGACAGACTCAGGGCGTTAGAAGATGTGGAGAAGGAGATAGCTTTAGTGCTTCAGAGCGCAgGAACGATTGTGCTGGAGCTTTCTAAAGAGAAGGCCAATGCCAGTTTATTAGACCGACAGCTGAACCAGTTTCAGACCTCCATCAACAGAGTTGAGAATGAACTAAGTGCACAGATCCGATATCtgacacagGTGGCAACAGGTCAGCCTCATGAGGGATCGACATATTCAGCCAGAAAGGACTGTCAGATGGCCCTAAACCGTGCCGAATATGCCCGGGTCAAACTGGGAGAGCTGGGACGCACCTGTGAGATAATGCTTGATCCACAGAcgtaaagaaatatttaatggaCTGTCGCATTGTAATATCTGCCAGCTGACTTCTTAAGTATTTACATGCATCAAAACCTTTCTGAATACCATCTACAAGTcaacaacaatttttatttttcataatccACAGACGTTttgtttaattacatatttttcccATCGTAATATCACTAAAACGTTTGTCTTATTAAGAAATGTCACATGTTTTCTTATGTTCTGTTATcactttttaaatagttatggcaaaataaaaacattttttcactaGCATTTTA

Function

symbol description
med11 Predicted to enable transcription coregulator activity. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of mediator complex. Orthologous to human MED11 (mediator complex subunit 11).

NR:

description
PREDICTED: mediator of RNA polymerase II transcription subunit 11

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016592 mediator complex cellular_component

KEGG:

id description
K15131 MED11; mediator of RNA polymerase II transcription subunit 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250075.1 False 749 mRNA 0.40 4 7882111 7883525
XM_043250076.1 True 752 mRNA 0.41 4 7881885 7883525

Neighbor

gene id symbol gene type direction distance location
ap4m1 ap4m1,LOC107554303,LOC107702797,LOC107742404,LOC107720677,LOC107586161,LOC107675998 coding upstream 10437 7866335 ~ 7871448 (+)
LOC122353466 NA coding upstream 17973 7863779 ~ 7863912 (+)
tmem88a tmem88a,LOC107554311,LOC107720688,LOC107742406,LOC107586221,LOC107676001 coding upstream 64184 7812206 ~ 7817701 (+)
kdm6bb LOC107676007,LOC107742353,LOC107720684,LOC107586158,LOC107554308,LOC107678007 coding upstream 71802 7782188 ~ 7810083 (+)
efnb3a efnb3a,LOC107742355,LOC107720690,LOC107678015,LOC107586157,LOC107676033,LOC107554296 coding upstream 134489 7709173 ~ 7747396 (+)
c10h17orf49 zgc:103508,LOC107720679,LOC107742347,LOC107702799,LOC107675997,LOC107586165,LOC107554320,LOC105902403 coding downstream 2089 7885614 ~ 7889230 (+)
si:dkey-175g6.2 si:dkey-175g6.2,LOC107702794,LOC107720675,LOC107554299,LOC107586203,LOC107742340,LOC107676019 coding downstream 48558 7932083 ~ 7936387 (+)
slc25a1a slc25a1a,LOC107720673,LOC107554324,LOC107586170,LOC107708615,LOC108424536,LOC108276564 coding downstream 63781 7947306 ~ 7951626 (+)
ltn1 ltn1,si:dkey-175g6.5,LOC107720671,LOC107702790,LOC107708613,LOC107675987,LOC107554323 coding downstream 73309 7956834 ~ 7999036 (+)
LOC122352901 NA coding downstream 213764 8097289 ~ 8099806 (+)
G75591 LOC107720685,LOC107586160,LOC107676011 non-coding upstream 22173 7840598 ~ 7859712 (+)
G75593 LOC107678008 non-coding upstream 32649 7845219 ~ 7849236 (+)
G75583 NA non-coding upstream 46986 7806361 ~ 7834899 (+)
G75574 NA non-coding upstream 199445 7682154 ~ 7682440 (+)
G75502 NA non-coding upstream 393318 7487475 ~ 7488567 (+)
G75607 NA non-coding downstream 17698 7901223 ~ 7902731 (+)
G75629 NA non-coding downstream 152609 8036134 ~ 8069911 (+)
G75766 NA non-coding downstream 281923 8165448 ~ 8165704 (+)
G75774 NA non-coding downstream 401630 8285155 ~ 8285865 (+)
G75799 NA non-coding downstream 430036 8313561 ~ 8314122 (+)
arrb2a arrb2a,arrb2,LOC107742343,LOC107586162,LOC107676026 other upstream 1785 7872539 ~ 7880100 (+)
trnat-agu_2 NA other upstream 19852 7861960 ~ 7862033 (+)
trnas-gcu_13 NA other upstream 20211 7861593 ~ 7861674 (+)
LOC122353465 NA other upstream 20506 7861246 ~ 7861379 (+)
si:ch211-237l4.6 NA other upstream 59367 7817810 ~ 7822518 (+)
G75750 NA other downstream 217951 8101476 ~ 8102924 (+)
LOC122352912 fam136a,LOC107569401,LOC107562571,LOC107713366,LOC107744116,LOC107686460,LOC107688083 other downstream 696484 8580009 ~ 8581128 (+)
G75935 LOC107556871,LOC107718714,LOC107720665,LOC107592158 other downstream 829678 8713203 ~ 8716277 (+)
G75937 NA other downstream 850254 8733779 ~ 8734996 (+)
gbe1a gbe1,LOC107685012,LOC107708609,LOC106581537,LOC108410718,LOC105900410 other downstream 1193341 9076866 ~ 9207335 (+)

Expression


Co-expression Network