rab36 (rab36,LOC107686502,LOC107562552,LOC107744178,LOC107555516,LOC108427235)


Basic Information

Item Value
gene id rab36
gene name rab36,LOC107686502,LOC107562552,LOC107744178,LOC107555516,LOC108427235
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 5274471 ~ 5279198 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250083.1
GCTCCTGCATCACGTGACTGCGGGTTCCGGCTCGCGGTTGCTATGGCGATGAAGGTAGGTTATGATGCGAAGAGTCTGTACGCATTCGTCATAAATTAGACTGCGCTGCAGCAATATCCGTGTGTTTCCCTGGACAACCTGCTCACAAGACAATGCATTTCAGCCCTCCTGTCAGCAGAGACAGGATCATTTCCACATTTCCAGAGTGTTTTAATCCACAAGCCTGCCTACAGATGAAAGGTGATTGGAACACAAAAGCCAAGATGGTCTGCCAAGACCGGTCAGCACGTCAGCAAGGGTTTGACAGGCTTAAGATGTCAAAAGCAGTAGTAGTTGGAGATCTCAATGTGGGAAAGACATGTTTAATAAACAGGTTCTGTAAagatgtgtttgagagagacTACAAGGCTACTATAGGTGTTGACTTTGAGATTGAGAGATTTGAGATATCTGGGCTGCCCTTTTCTCTTCAAATATGGGACACTGCTGGTCAGGAAAAGTTCAAATGTATCGCATCAGCATATTACAGAGGAGCTCAAGTTATTATTACTGTCTTCGACATGGCTGATATCAAGAGCTTGGAACACACACAacaGTGGTTAAAAGAGGCACTGCAGGAAAATGAACCAGActcctgttttgttttcatggTTGGCACAAAAAGAGACCTCCTGTCTGCAGAAGAGTGCCAGAGAACAGAGAATGATGCCATAAAGATTGCATTGGAAATGAACGCTGAGTTCTGGTCAGTGTCTTCAAAAACAGGAGAAAACGTCCAGGAGTTTTTCTTTCGCGTAGCAGCTCTGGCCTTTGAAGATGCCATTCTGAAGGATCTGGAGACAGAAATCAGCACTACTCAAATTGGAGATGGAAGTATTCTTGATGATAAAGCACTGGAAGATGCACAAGAAAAACCAAAGAAGAAGTCCTGTTGTTGACCCTCAGTGGTTTAAGAAGAACTAACAAATTTGTAATTAGAGgacagaataaatatttaacctcgtagaaaacaagtgtttttgGTTGACATAATCAACCTCTGAGTTGGGGCAACACTAATATAATCTCTGAGAGGGCTCACCTTATCagaacacacataaaaataaggGACTGACATCTGATATGAATTCAGACATTTGatatatatactgtagtattaacattacttttaacagtattttgtACTTCAACATAAACTGCCATGTAAtaattgcattgtatttttccttttgtatttttaatcttcttttgacagataaaataaacatacattataA

Function

symbol description
rab36 Predicted to enable GTP binding activity and GTPase activity. Orthologous to human RAB36 (RAB36, member RAS oncogene family).

NR:

description
ras-related protein Rab-36-like isoform X2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K07922 RAB36; Ras-related protein Rab-36

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250083.1 True 1277 mRNA 0.40 11 5274471 5279198

Neighbor

gene id symbol gene type direction distance location
depdc5 LOC107713378,LOC107562559,LOC107686465,LOC107687976 coding downstream 317 5253037 ~ 5274154 (-)
ywhah ywhah,LOC107562560,LOC107713377,LOC107688000,LOC107555530 coding downstream 21752 5248160 ~ 5252719 (-)
LOC122352871 LOC107711242,LOC107672448,LOC107588011,LOC107757354,LOC107670494,LOC107567230 coding downstream 220707 5049998 ~ 5053764 (-)
LOC122352563 pgls,LOC107672478,LOC107711179,LOC107757376,LOC107567243,LOC107670497 coding downstream 243011 5029305 ~ 5031460 (-)
LOC122352400 gmip,LOC107672475,LOC107670530,LOC107757342,LOC107587992,LOC107711163 coding downstream 257320 5000684 ~ 5017151 (-)
gnaz gnaz,LOC107555529,LOC107744122,LOC107686467,LOC107562557 coding upstream 4889 5284087 ~ 5324750 (-)
LOC122352800 nt5c2l1,LOC107686470,LOC107744123,LOC107555525,LOC107713283,LOC107687927,LOC107567439 coding upstream 92678 5371876 ~ 5382925 (-)
slc2a11l slc2a11l,LOC107567450,LOC107713284,LOC107688428,LOC107686496,LOC107555508 coding upstream 105024 5384222 ~ 5391563 (-)
ska1 ska1,LOC107686503,LOC107713381,LOC107688613,LOC107744125,LOC107555507 coding upstream 112512 5391710 ~ 5396170 (-)
smarcad1b smarcad1b,LOC107686471,LOC107744126,LOC107567438 coding upstream 117324 5396522 ~ 5412369 (-)
G74959 NA non-coding downstream 38522 5235606 ~ 5235949 (-)
G74957 NA non-coding downstream 135012 5137567 ~ 5139459 (-)
G74955 NA non-coding downstream 137295 5136158 ~ 5137176 (-)
G74923 NA non-coding downstream 173052 5097644 ~ 5101419 (-)
G74944 NA non-coding downstream 178443 5095628 ~ 5096028 (-)
G75019 NA non-coding upstream 102378 5381576 ~ 5451970 (-)
G75049 NA non-coding upstream 219285 5498483 ~ 5500310 (-)
G75065 NA non-coding upstream 279744 5558942 ~ 5559159 (-)
LOC122353023 NA non-coding upstream 599521 5878719 ~ 5890613 (-)
G75134 ppp2r2ab,LOC107561386,LOC107687801,LOC107744137,LOC107678035 non-coding upstream 625182 5904380 ~ 5906868 (-)
LOC122352369 colgalt1,LOC107672476,LOC107711180,LOC107757371,LOC107670492,LOC107567242,LOC108429625,LOC107587993 other downstream 245958 5019307 ~ 5028513 (-)
LOC122352741 diras2,LOC107560410,LOC107736992,LOC107702570,LOC107558266,LOC107715878,LOC107670053 other downstream 1361729 3905614 ~ 3912742 (-)
hnrnpd LOC107702593,LOC107715890,LOC107573849 other downstream 1666683 3601612 ~ 3607788 (-)
LOC122353137 palm2,LOC107702598,LOC107715893,LOC107732273,LOC107653494,LOC107569382 other downstream 1896687 3337339 ~ 3377784 (-)
LOC122352587 cntfr,LOC107554853,LOC107756542 other downstream 2507276 2717097 ~ 2767195 (-)
si:ch211-113d22.2 si:ch211-113d22.2,LOC107677989,LOC107705073,LOC107586211,LOC107688532 other upstream 1258924 6538122 ~ 6540973 (-)
sprn2 LOC107578968,LOC107720715 other upstream 1349227 6628425 ~ 6631188 (-)
G75454 LOC107552069,LOC107678002,LOC107586137,LOC107687386,LOC107742371,LOC108437806 other upstream 1898126 7177324 ~ 7180821 (-)
LOC122352929 LOC107675999,LOC107677996,LOC107552059,LOC107720693 other upstream 2244996 7524194 ~ 7528558 (-)
G75562 LOC107675999,LOC107720693,LOC107677996,LOC107552059 other upstream 2251663 7530861 ~ 7544090 (-)

Expression


Co-expression Network