LOC122352614 (LOC107701908,LOC107729578,LOC107556598)



Basic Information


Item Value
gene id LOC122352614
gene name LOC107701908,LOC107729578,LOC107556598
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 15307899 ~ 15315868 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043250085.1
TGAGACGCATTTCGAAAAGGTGTGTTACCCAAAGACTACTCGTAAATATTGTcagttttaaataagattttaagTATATAATCGTTTTAGAAATGTTTCGATGTTTTGACGTTTTAACATCACTGCAGGGATGTCTCGCGGCTGTGCAGACTTGCGTGATTCTGCGAAATGAAGAGAAAAGATCCTGCAATCAGCAGCATGCTCGAATTGAGCGTGAACCGCAAGTGCATAGGGTCCTAATACTGGGTACTCCAGAAAGCGGCAAAAGTACATTAATCAAACAGACGAAGATCATCTACAGCCATGGCTTTACAAAACAAGAACTCATCAGTTTCAAGCCTGCTGTGTTGGATAACTTGCTGACAAATATGAAGTTTGTGCTGCATGGCATGGGAATGCTGCGCATTAATTTgtcaaacaagaaaaacaagGCCCACGCACGCGCAATCTTGTCATGTAAGTGTTGTGTAGGAGAGGATATGGAGCTGCTGCCATTTGTGGCTTATTCATTCTGCAGTCTGTGGGGGGATCTGGGCATGAGGACAGCAGTGTCCAGAGGCCATGAGTTCCAGCTCAATGATTCTGCATTATATTTTTTTGAGAACATAAGTCGCATCATCGCTCCAAACTACATCCCCACTAAAACAGATGTCCTCAGAGTGAGAGTAAGGACTCAGGGTGTCATTGAAAGCCAGTTCAGAGTCAACAACTCACTGTACAGgcTATATGATGTGGGTGGTCATTgttcagaaagaaagaagtggtACAGTTATTTTGACAGTGTCCAGGCAGTGCTGTTTATGGTGGCTCTTAGTGGGTATGATCAAAATCTTCATGAAAATCATTCCAAGAACCGTCTCCATGAAAGCCTGGAATACTTCAGATCCACGTGTAACAGTATGTTTTTCAGAGGAACTTCTTTGgttttattcatgaacaaaattgatttatttgctgAGAAAATACTGTATTCTGGAAGACATCTGCGACTTTATCAGCCAGGTTTCAAAGGTTCTGACTGTGATGTAagttgtgctgctcaatatgTAACTAACCAGTTTGTGGAATGTGCTACCACCTCAGGCAAGATGGTGTACTCTCACTTCACCAATGCCACAGACCCCTCCAGCGTACATGAAGCCTTCCAGCTCATCATGAGCACTATTGTTAAACATAACCTTCAAACAATCTCACTactctaattttttttttttaatattcccatttttatttttgtctgctgtttgtctatttttaataaaatagcctTTTTAATGGATCAGGTAAtccatatataaataaatgtgtttttataatgttttaattacgAGCCTCTTTAATTTGTTACCTGcttaatttacataattgtgggatcattaaagtgttttaattgattcgtttaaaagtatacatttcacTCACTAaagagagattttaaatatatgtaaagcaaatatatatgcGGTGTTTCGAGCTCACGTTCAAAGACCAAGACTACAGAAAGCACATCATGTTTGCtttaattatttcacaaaaatgtgaagTGCACACAAATAAACGCAATCTTTAGCGATGTACTACTCCTAAAGATGTACTACTCCTGTTTGGCCAAAAATTTGCAGCATTTTAAGCGCAAGTAAGTGCTCAGCCACCTTCATCTATCCTGAAGCGAGTGAGCGCTTTTCACGCTGCCCACACACTTCAACAGCACACATTTCTCTGGGTTAACATTAGATTGAGCAGCATTGTAAAGTTGCTAATGcttacatatttcatatatacacataattcaCATGAAACATTCACACTAATCATATTTGAGGTCGTTGAGGAGAGCGTTGGATGCACTTGATTGTTTTATCATAGACTAGTCTAACGACCTGTTAAATGACTTCGCCGGGTTTTTTAAGAGACTGATAAAAATTTGGTTGACCAAACCTCTTCTAGTCGACTAACTTTGTGGTTG
>XM_043250086.1
gaacccacacgaagaagttcgtatgatgcaagttttaagttgaagtCCATCGATCTCGCTATACAAGAAGGAAACCGCGCTGCTGCTCGGAAGCTTAGCGTCAATGAGTCTATGGtgagacgctggaggaggcagcgggaagagcaaaacttttttaaatagagcggatgcggcttatatgcagCCTGCTGTGTTGGATAACTTGCTGACAAATATGAAGTTTGTGCTGCATGGCATGGGAATGCTGCGCATTAATTTgtcaaacaagaaaaacaagGCCCACGCACGCGCAATCTTGTCATGTAAGTGTTGTGTAGGAGAGGATATGGAGCTGCTGCCATTTGTGGCTTATTCATTCTGCAGTCTGTGGGGGGATCTGGGCATGAGGACAGCAGTGTCCAGAGGCCATGAGTTCCAGCTCAATGATTCTGCATTATATTTTTTTGAGAACATAAGTCGCATCATCGCTCCAAACTACATCCCCACTAAAACAGATGTCCTCAGAGTGAGAGTAAGGACTCAGGGTGTCATTGAAAGCCAGTTCAGAGTCAACAACTCACTGTACAGgcTATATGATGTGGGTGGTCATTgttcagaaagaaagaagtggtACAGTTATTTTGACAGTGTCCAGGCAGTGCTGTTTATGGTGGCTCTTAGTGGGTATGATCAAAATCTTCATGAAAATCATTCCAAGAACCGTCTCCATGAAAGCCTGGAATACTTCAGATCCACGTGTAACAGTATGTTTTTCAGAGGAACTTCTTTGgttttattcatgaacaaaattgatttatttgctgAGAAAATACTGTATTCTGGAAGACATCTGCGACTTTATCAGCCAGGTTTCAAAGGTTCTGACTGTGATGTAagttgtgctgctcaatatgTAACTAACCAGTTTGTGGAATGTGCTACCACCTCAGGCAAGATGGTGTACTCTCACTTCACCAATGCCACAGACCCCTCCAGCGTACATGAAGCCTTCCAGCTCATCATGAGCACTATTGTTAAACATAACCTTCAAACAATCTCACTactctaattttttttttttaatattcccatttttatttttgtctgctgtttgtctatttttaataaaatagcctTTTTAATGGATCAGGTAAtccatatataaataaatgtgtttttataatgttttaattacgAGCCTCTTTAATTTGTTACCTGcttaatttacataattgtgggatcattaaagtgttttaattgattcgtttaaaagtatacatttcacTCACTAaagagagattttaaatatatgtaaagcaaatatatatgcGGTGTTTCGAGCTCACGTTCAAAGACCAAGACTACAGAAAGCACATCATGTTTGCtttaattatttcacaaaaatgtgaagTGCACACAAATAAACGCAATCTTTAGCGATGTACTACTCCTAAAGATGTACTACTCCTGTTTGGCCAAAAATTTGCAGCATTTTAAGCGCAAGTAAGTGCTCAGCCACCTTCATCTATCCTGAAGCGAGTGAGCGCTTTTCACGCTGCCCACACACTTCAACAGCACACATTTCTCTGGGTTAACATTAGATTGAGCAGCATTGTAAAGTTGCTAATGcttacatatttcatatatacacataattcaCATGAAACATTCACACTAATCATATTTGAGGTCGTTGAGGAGAGCGTTGGATGCACTTGATTGTTTTATCATAGACTAGTCTAACGACCTGTTAAATGACTTCGCCGGGTTTTTTAAGAGACTGATAAAAATTTGGTTGACCAAACCTCTTCTAGTCGACTAACTTTGTGGTTGGCA

Function


NR:

description
PREDICTED: guanine nucleotide-binding protein G(o) subunit alpha-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043250085.1 True 1966 mRNA 0.39 10 15307902 15315868
XM_043250086.1 False 1815 mRNA 0.39 8 15307899 15314674

Neighbor


gene id symbol gene type direction distance location
LOC122352451 LOC106676183,LOC106674878 coding downstream 1491 15305535 ~ 15306408 (-)
LOC122352450 NA coding downstream 192451 15111412 ~ 15115448 (-)
si:ch211-256e16.3 si:ch211-256e16.3,LOC107674048,LOC107552129,LOC107717492,LOC108412900,LOC105898657,LOC108260968,LOC106601741 coding downstream 678825 14620986 ~ 14629074 (-)
LOC122352591 uqcrc2a,LOC107671252,LOC107717493,LOC107552131,LOC107674831 coding downstream 689289 14611801 ~ 14618610 (-)
mosmoa c16orf52.L,c17h16orf52,C20H16orf52,LOC108258941,LOC106518731,LOC102224510,LOC105910214 coding downstream 696676 14591019 ~ 14611223 (-)
LOC122353145 LOC107701914,LOC108437168,LOC108277112,LOC105013038 coding upstream 780 15316648 ~ 15341965 (-)
mafga mafga,LOC107556599,LOC107739593,LOC107729585,LOC107701907 coding upstream 31599 15347467 ~ 15362276 (-)
LOC122353069 LOC107565282,LOC107679515,LOC107730972,LOC107694558 coding upstream 367403 15683271 ~ 15684293 (-)
LOC122352456 LOC107679515,LOC107565282,LOC107730972,LOC107694558 coding upstream 379552 15695420 ~ 15697678 (-)
LOC122352458 NA coding upstream 389357 15705225 ~ 15706280 (-)
G77692 NA non-coding downstream 31895 15273913 ~ 15276004 (-)
G77676 NA non-coding downstream 148052 15159465 ~ 15159847 (-)
G77674 NA non-coding downstream 151308 15156349 ~ 15156591 (-)
G77672 NA non-coding downstream 168892 15138607 ~ 15139007 (-)
G77669 NA non-coding downstream 204330 15102149 ~ 15103569 (-)
G77700 NA non-coding upstream 29132 15345000 ~ 15347289 (-)
G77703 NA non-coding upstream 52533 15368401 ~ 15368676 (-)
G77706 NA non-coding upstream 76220 15392088 ~ 15394552 (-)
G77715 NA non-coding upstream 328535 15644403 ~ 15647863 (-)
LOC122352661 NA non-coding upstream 511216 15827084 ~ 15827556 (-)
LOC122352744 LOC107556605,LOC107709039,LOC107722845,LOC107690595,LOC107555077 other downstream 18227 15229969 ~ 15289672 (-)
G77671 NA other downstream 200147 15107137 ~ 15107752 (-)
vwa3a LOC107675622,LOC107552102,LOC107726804,LOC107717475 other downstream 718000 14568330 ~ 14589899 (-)
im:6904045 NA other downstream 822607 14484799 ~ 14485292 (-)
LOC122353009 LOC107562038,LOC107562041 other downstream 826450 14467186 ~ 14481449 (-)
G77702 NA other upstream 41817 15357685 ~ 15358232 (-)
npffr1l1 npffr1l1,LOC107658551,LOC105907118 other upstream 576776 15892644 ~ 15897232 (-)
LOC122352931 LOC107758671,LOC107689893 other upstream 700803 16016671 ~ 16021774 (-)
cabp1b LOC107583405,LOC107746207,LOC107658587,LOC107758669,LOC107689072,LOC108440152,LOC103029522,LOC107373232,LOC102297829,LOC108232745,LOC103473718,LOC105890914,LOC107558082,LOC102200114 other upstream 714659 16030527 ~ 16057307 (-)
morn3 orai1b,morn3,LOC107746203,LOC107602056,LOC107689140,LOC107758661,LOC108425168,LOC107758660,LOC107683200 other upstream 856610 16172478 ~ 16177111 (-)

Expression



Co-expression Network