LOC122352616 (plac8.1)


Basic Information

Item Value
gene id LOC122352616
gene name plac8.1
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 1719875 ~ 1721319 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250088.1
gtGCATTTCCAAGGGTGGGTCTGAACGCGTGGCGTTTCAAAAACTATATAATCTCGGCTCATTGCGGGCATGTTTCAGTGCATAGTGGAGTATCCCGACTCAACCGAGAGAAAAACAAGGGGATAGctgcaattaaatattatatactttttgCTGTCACAGATCATGGAGATCACATCTCAACCTGCTGCTTTTGAACCCCGAGACTTTCACTCAGGTTTAATGAGCTGCTGTGACGACATGGGTGTATGTTGCTGCGGTTTCTTCTGCCTCCCTTGTTTGGGCTGCTCCATCGCCAGCGACATGAATGAGTGCTGCTTATGCGGTTTAGGCATGCCCATCCGGAGCGTGTACAGGACTAAATACAACATACAGGGATCCATGTGTAATGACTGGATGGTGGCGAACTGCTGCTTCAGTTGTGCAGCCTGTCAGCTGAAGAGAGACCTCAAAATAAGGAAGAGCAATGGAACGCTGAAACCCTGAGAAGGGAAAAACGGTCCTTACTCGCTGCTCGAAAGAATTAAAGTTAATCATTTGAAACGTAATGGAAATGTCTTTGCCGTCATAAGTACcataaattcaaaacttaaagatTCTGGTCAGTAAGCTATTGGTTTGTTATTGTCAAAATGAAGtgaatttttacttaaataatctgccaatgggatttctgtttgaaattaagattattttgcttgttcttaAGCAAAAAAGTCACTTcattttgacaatatttttttacctgCCTggaaaatccttttttttgttgtttttttattttggctggaaacgagacaaaaaaatctgggctaaaaaagcatttattgcgGTGAAATACATGTTTTCAAATAACTTGGTTGGGAAGAGAAAATGGTGTGATATAAGTATATTGTCAGTGTGGTTTGTTGGTTGTGTTTTGAAACATagtaagtaaaatgtaaaagaaaagtgaaaTTACGGATGAAGAAAGAACTTCAGTGCAGTGCTACAGTACTTCAGTTCTTAACTTAAAACAATGTATTCTTTGTAAATTACGGCTGCGTTCATTTTCTTAATATCTACTTCaaacacaattaaacattttgcagGCACTGCGTAGTATTGCCATGCCATTTGTCCTGCCTGTACGTcttatgaataaagaaacaaccTTTTTTGCTAA

Function

symbol description
plac8.1 Predicted to be involved in positive regulation of transcription by RNA polymerase II. Is expressed in gut. Orthologous to human PLAC8 (placenta associated 8).

NR:

description
placenta-specific 8, tandem duplicate 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250088.1 True 1165 mRNA 0.39 4 1719875 1721319

Neighbor

gene id symbol gene type direction distance location
plac8.2 plac8 coding downstream 2535 1715412 ~ 1717340 (-)
LOC122353114 NA coding downstream 11924 1706268 ~ 1707951 (-)
lin54 lin54,LOC107658675,LOC107685107,LOC107558659,LOC107744261 coding downstream 18805 1691155 ~ 1701070 (-)
LOC122352375 inip,LOC107658659,LOC107558675,LOC107571239 coding downstream 31100 1687751 ~ 1688775 (-)
ptbp3 LOC107658670,LOC107744247 coding downstream 69914 1592398 ~ 1649961 (-)
srek1ip1 srek1ip1,LOC107558662,LOC107685105,LOC107713259,LOC107658680,LOC107744254 coding upstream 1280 1722599 ~ 1724123 (-)
trim23 trim23,LOC107658681 coding upstream 132771 1854090 ~ 1862055 (-)
apba1b LOC107667257,LOC107558696,LOC107705048,LOC107548674,LOC107742885 coding upstream 207555 1928874 ~ 1939997 (-)
zfand5b LOC107705050,LOC107742939,LOC107726558,LOC107667265 coding upstream 248163 1969482 ~ 1976383 (-)
erbin erbb2ip,LOC107667260,LOC107726559,LOC107705051,LOC107742960 coding upstream 256942 1978261 ~ 2043435 (-)
G74075 plac8 non-coding downstream 2556 1592174 ~ 1717319 (-)
G74109 NA non-coding downstream 14198 1705098 ~ 1705677 (-)
G74110 LOC107558694,LOC107685106,LOC107658677,LOC107713304 non-coding downstream 16757 1702757 ~ 1703118 (-)
G74092 NA non-coding downstream 58989 1591541 ~ 1660886 (-)
G74090 NA non-coding downstream 59312 1658534 ~ 1660563 (-)
G74149 NA non-coding upstream 146653 1867972 ~ 1868946 (-)
LOC122353011 NA non-coding upstream 148674 1869993 ~ 1876752 (-)
LOC122352694 NA non-coding upstream 440825 2162144 ~ 2162704 (-)
LOC122352693 NA non-coding upstream 445072 2166391 ~ 2167347 (-)
LOC122352691 NA non-coding upstream 448000 2169319 ~ 2170549 (-)
nrarpa nrarpa,nrarp other downstream 231867 1483399 ~ 1488008 (-)
G74031 NA other downstream 245997 1466751 ~ 1473878 (-)
G74058 NA other downstream 270989 1445323 ~ 1448886 (-)
si:dkeyp-41f9.4 NA other downstream 831863 885156 ~ 888012 (-)
G73687 mocs2,LOC107685191,LOC107597632,LOC107595575,LOC107744090,LOC107713337 other downstream 926151 789423 ~ 793724 (-)
adamts6 adamts6,LOC107744255,LOC107685101,LOC107713302 other upstream 52904 1774223 ~ 1846902 (-)
LOC122352692 NA other upstream 472766 2194085 ~ 2197429 (-)
LOC122352587 cntfr,LOC107554853,LOC107756542 other upstream 995778 2717097 ~ 2767195 (-)
LOC122353137 palm2,LOC107702598,LOC107715893,LOC107732273,LOC107653494,LOC107569382 other upstream 1616020 3337339 ~ 3377784 (-)
hnrnpd LOC107702593,LOC107715890,LOC107573849 other upstream 1880293 3601612 ~ 3607788 (-)

Expression


Co-expression Network