katnal2 (katnal2,LOC102797751,LOC104955398,LOC107573073)


Basic Information

Item Value
gene id katnal2
gene name katnal2,LOC102797751,LOC104955398,LOC107573073
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 2351663 ~ 2360133 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250119.1
AACAGGGGCAGTCGCTAGCTCGTTCACTTCAGCTcgctgctgtgtgtttgttcgtGTGTTCATATTAGCATGGATCTCTCTTATCAAGCCATTAGGACTGCTAATCAGGCCAGAGAGGCGGACGAACTGAGAACAGAAACACGCAGGAGGAATTTGCTGGTGTTGATTTATCATCATTTGATGGAGGAGGGGTACATGGATTCAGCTAAAGCTTTGGAGAAAGAAAGCAGTTTTGCTTTATGCCACTTTGAGGTGTGTGATAATGTTGACCTGGAGACCGTCCTTATGGAATATGagagttattatttaataaagtttcAGAAATATCCCAAACTGACAAAGAAACTGACAGAACAAGgGGATAGTCGGTTTTTAAAGAGCTGTGGTAAAAGAAGGACATCATCGAGTCACACGCTCCCAAGAATCAACTCCATCCAGCGACCTCCATCCAGAAGCGCCGTGAAGAAGACCGAATCTAAACTAACAGGAAGAGACATCAGCAAATCCAGCGAAGGAGAGCAGCTGACGCCAGCGGACGCTTCAAGGTTCGGTCTCAATGTGTCTCCTCTCATCAGGAATGGGACTGAAGAGGAAACACATACGAGAAAGGTTGATTACAGGAGTCTGATTTCTGATGCAGTTAAAGGTGCCGCTAACGGCTCGATCCTGCCCTGCACTGATTTCTCAGAGCGTTTGCTGAAGCCCATAAGTGCCTTCATTGGAATGAACAGTGACATGAGGGAACTTGCAGCGGTTATTAGCAGAGATATCTATTTACACAACCCCAACGTGCGCTGGGACGACATTATAGGCCTGGAGGCTGCCAAGCGATTAGTCAAAGAAGCTGTCGTCTACCCCATTAAGtatCCGCAGCTGTTCACTGGAATTCTGTCACCATGGAAGGGTTTACTCCTGTATGGACCACCAGGCACAGGAAAGACGATGTTGGCCAAAGCTGTAGCCACAGAGTGCAACACAACATTCTTCAACATCTCTGCATCCAGTATTGTCAGCAAATGGAGGGGAGATTCTGAGAAGCTGGTTCGGGTCAgaagaaacattattttgtcacatttgtgttattcaattttttatgtaatgtgtgGGGGAAAGGTTGTGCTCAGCGAAACATTGATTTCTTTGTTATATGATTCTCTACAGGTCTTGTTTGAGCTGGCAAGATATCACGCTCCATCCACCATTTTCTTGGATGAGCTGGAATCAGTGATGAGCCAGCGAGGGGTTGGCCAAGGAGGTGATCACGAGGGCAGTAGAAGGATGAAGACAGAGTTACTAGTTCAGATGGATGGACTAGCGCGATCAAACGATCTTGTGTTTGTACTTGCTGCCTCAAACTTACCTTGGGAGTTGGACCATGCCATGCTCAGAAGACTGGAGAAGCGGATACTGGTTGGTCTCCCATCTGCCCCTGCCAGACAAGCCATGATCAGTCACTGGCTGCCTCCAGTTAGTAACACAGGTGGGGTGGAGCTACGGACAGAGCTGGACTATGACTCACTGGCACAGAAGACAGGAGGTTACTCTGGGTCAGACATCAGGTTAGTGTGTAAGGAGGCCGCTATGAGACCTGTGCGAAAAATCTTCGACGCCCTTGAAAATCATATTGAAGGTCAGTCCAATATGCCGGTTATTGAACTAGAAACTGTGACCACAGCAGATTTCCTGGAGGTGATTGCTCACACCAAACCGTCAGCCAGATGTCTGATGGATAGATACTCGGCCTGGGAGAAAGAGTACGAGTCTGTCTGACACATGATCTCAGCATAATACATAAACTATTATTACGGCaaccgtttttttttactctttttataATGACACGCCCATGTTTCTcacttgaaaaacatttttaacaaatattaaactaCAGTTCGTTTT
>XM_043250120.1
TCCGTATATATTGTGAGCTACATGGGCTACGAATGAAGTCGATAGCCTTTTTATCGTTTTTAAATAGCCTTTCAGATACGTTTTTGACGATTAGCAATATGGCTAGTTAGTTACTAAATACGCTTGTTGCCATAGCAACCTGTCAAACCGTGCTCGCGCTTCCATTGAAGTAAGATTTGGCGCCATCTAACGGTTAAGTGGAGTTTCCGTTTCAAAATATTCAGCAATTctaattttacagctaaaaTATATCCGTTTGAGTTACTCAGTTACTAATATTTACACAAATTCCTCGCAAAATACGCTACTAGTACTACAGTTGCTGACGAACTGAGAACAGAAACACGCAGGAGGAATTTGCTGGTGTTGATTTATCATCATTTGATGGAGGAGGGGTACATGGATTCAGCTAAAGCTTTGGAGAAAGAAAGCAGTTTTGCTTTATGCCACTTTGAGGTGTGTGATAATGTTGACCTGGAGACCGTCCTTATGGAATATGagagttattatttaataaagtttcAGAAATATCCCAAACTGACAAAGAAACTGACAGAACAAGgGGATAGTCGGTTTTTAAAGAGCTGTGGTAAAAGAAGGACATCATCGAGTCACACGCTCCCAAGAATCAACTCCATCCAGCGACCTCCATCCAGAAGCGCCGTGAAGAAGACCGAATCTAAACTAACAGGAAGAGACATCAGCAAATCCAGCGAAGGAGAGCAGCTGACGCCAGCGGACGCTTCAAGGTTCGGTCTCAATGTGTCTCCTCTCATCAGGAATGGGACTGAAGAGGAAACACATACGAGAAAGGTTGATTACAGGAGTCTGATTTCTGATGCAGTTAAAGGTGCCGCTAACGGCTCGATCCTGCCCTGCACTGATTTCTCAGAGCGTTTGCTGAAGCCCATAAGTGCCTTCATTGGAATGAACAGTGACATGAGGGAACTTGCAGCGGTTATTAGCAGAGATATCTATTTACACAACCCCAACGTGCGCTGGGACGACATTATAGGCCTGGAGGCTGCCAAGCGATTAGTCAAAGAAGCTGTCGTCTACCCCATTAAGtatCCGCAGCTGTTCACTGGAATTCTGTCACCATGGAAGGGTTTACTCCTGTATGGACCACCAGGCACAGGAAAGACGATGTTGGCCAAAGCTGTAGCCACAGAGTGCAACACAACATTCTTCAACATCTCTGCATCCAGTATTGTCAGCAAATGGAGGGGAGATTCTGAGAAGCTGGTTCGGGTCAgaagaaacattattttgtcacatttgtgttattcaattttttatgtaatgtgtgGGGGAAAGGTTGTGCTCAGCGAAACATTGATTTCTTTGTTATATGATTCTCTACAGGTCTTGTTTGAGCTGGCAAGATATCACGCTCCATCCACCATTTTCTTGGATGAGCTGGAATCAGTGATGAGCCAGCGAGGGGTTGGCCAAGGAGGTGATCACGAGGGCAGTAGAAGGATGAAGACAGAGTTACTAGTTCAGATGGATGGACTAGCGCGATCAAACGATCTTGTGTTTGTACTTGCTGCCTCAAACTTACCTTGGGAGTTGGACCATGCCATGCTCAGAAGACTGGAGAAGCGGATACTGGTTGGTCTCCCATCTGCCCCTGCCAGACAAGCCATGATCAGTCACTGGCTGCCTCCAGTTAGTAACACAGGTGGGGTGGAGCTACGGACAGAGCTGGACTATGACTCACTGGCACAGAAGACAGGAGGTTACTCTGGGTCAGACATCAGGTTAGTGTGTAAGGAGGCCGCTATGAGACCTGTGCGAAAAATCTTCGACGCCCTTGAAAATCATATTGAAGGTCAGTCCAATATGCCGGTTATTGAACTAGAAACTGTGACCACAGCAGATTTCCTGGAGGTGATTGCTCACACCAAACCGTCAGCCAGATGTCTGATGGATAGATACTCGGCCTGGGAGAAAGAGTACGAGTCTGTCTGACACATGATCTCAGCATAATACATAAACTATTATTACGGCaaccgtttttttttactctttttataATGACACGCCCATGTTTCTcacttgaaaaacatttttaacaaatattaaactaCAGTTCGTTTT
>XM_043250121.1
AACAGGGGCAGTCGCTAGCTCGTTCACTTCAGCTcgctgctgtgtgtttgttcgtGTGTTCATATTAGCATGGATCTCTCTTATCAAGCCATTAGGACTGCTAATCAGGCCAGAGAGGCGGACGAACTGAGAACAGAAACACGCAGGAGGAATTTGCTGGTGTTGATTTATCATCATTTGATGGAGGAGGGGTACATGGATTCAGCTAAAGCTTTGGAGAAAGAAAGCAGTTTTGCTTTATGCCACTTTGAGGTGTGTGATAATGTTGACCTGGAGACCGTCCTTATGGAATATGagagttattatttaataaagtttcAGAAATATCCCAAACTGACAAAGAAACTGACAGAACAAGgGGATAGTCGGTTTTTAAAGAGCTGTGGTAAAAGAAGGACATCATCGAGTCACACGCTCCCAAGAATCAACTCCATCCAGCGACCTCCATCCAGAAGCGCCGTGAAGAAGACCGAATCTAAACTAACAGGAAGAGACATCAGCAAATCCAGCGAAGGAGAGCAGCTGACGCCAGCGGACGCTTCAAGGTTCGGTCTCAATGTGTCTCCTCTCATCAGGAATGGGACTGAAGAGGAAACACATACGAGAAAGGTTGATTACAGGAGTCTGATTTCTGATGCAGTTAAAGGTGCCGCTAACGGCTCGATCCTGCCCTGCACTGATTTCTCAGAGCGTTTGCTGAAGCCCATAAGTGCCTTCATTGGAATGAACAGTGACATGAGGGAACTTGCAGCGGTTATTAGCAGAGATATCTATTTACACAACCCCAACGTGCGCTGGGACGACATTATAGGCCTGGAGGCTGCCAAGCGATTAGTCAAAGAAGCTGTCGTCTACCCCATTAAGtatCCGCAGCTGTTCACTGGAATTCTGTCACCATGGAAGGGTTTACTCCTGTATGGACCACCAGGCACAGGAAAGACGATGTTGGCCAAAGCTGTAGCCACAGAGTGCAACACAACATTCTTCAACATCTCTGCATCCAGTATTGTCAGCAAATGGAGGGGAGATTCTGAGAAGCTGGTTCGGGTCTTGTTTGAGCTGGCAAGATATCACGCTCCATCCACCATTTTCTTGGATGAGCTGGAATCAGTGATGAGCCAGCGAGGGGTTGGCCAAGGAGGTGATCACGAGGGCAGTAGAAGGATGAAGACAGAGTTACTAGTTCAGATGGATGGACTAGCGCGATCAAACGATCTTGTGTTTGTACTTGCTGCCTCAAACTTACCTTGGGAGTTGGACCATGCCATGCTCAGAAGACTGGAGAAGCGGATACTGGTTGGTCTCCCATCTGCCCCTGCCAGACAAGCCATGATCAGTCACTGGCTGCCTCCAGTTAGTAACACAGGTGGGGTGGAGCTACGGACAGAGCTGGACTATGACTCACTGGCACAGAAGACAGGAGGTTACTCTGGGTCAGACATCAGGTTAGTGTGTAAGGAGGCCGCTATGAGACCTGTGCGAAAAATCTTCGACGCCCTTGAAAATCATATTGAAGGTCAGTCCAATATGCCGGTTATTGAACTAGAAACTGTGACCACAGCAGATTTCCTGGAGGTGATTGCTCACACCAAACCGTCAGCCAGATGTCTGATGGATAGATACTCGGCCTGGGAGAAAGAGTACGAGTCTGTCTGACACATGATCTCAGCATAATACATAAACTATTATTACGGCaaccgtttttttttactctttttataATGACACGCCCATGTTTCTcacttgaaaaacatttttaacaaatattaaactaCAGTTCGTTTT

Function

symbol description
katnal2 Predicted to enable ATP hydrolysis activity and microtubule-severing ATPase activity. Predicted to be involved in cytoplasmic microtubule organization. Predicted to be located in cytoplasm and microtubule. Predicted to be active in nucleus. Orthologous to human KATNAL2 (katanin catalytic subunit A1 like 2).

NR:

description
LOW QUALITY PROTEIN: katanin p60 ATPase-containing subunit A-like 2

GO:

id name namespace
GO:0051013 microtubule severing biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0008568 microtubule-severing ATPase activity molecular_function
GO:0008017 microtubule binding molecular_function

KEGG:

id description
K07767 KATNA1; katanin p60 ATPase-containing subunit A1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250119.1 False 1899 mRNA 0.46 15 2351663 2360133
XM_043250120.1 True 2103 mRNA 0.44 15 2351663 2359893
XM_043250121.1 False 1785 mRNA 0.47 16 2351663 2360133

Neighbor

gene id symbol gene type direction distance location
si:dkey-88l16.3 LOC107667258,LOC107738845,LOC107743196,LOC107548646 coding downstream 122673 2198983 ~ 2228990 (-)
parm1 NA coding downstream 165620 2181795 ~ 2186043 (-)
sh3bp2 sh3bp2,LOC107667261,LOC107705055,LOC107558670,LOC107743173,LOC106568140 coding downstream 226931 2107110 ~ 2124732 (-)
vldlr vldlr,LOC107705052,LOC107548665,LOC107558669,LOC107667264 coding downstream 246374 2086121 ~ 2105289 (-)
kcnv2a kcnv2a,kcnv2,LOC107726563,LOC107667263,LOC107558705,LOC107743156,LOC108428855 coding downstream 267473 2081915 ~ 2084190 (-)
sigmar1 sigmar1,LOC107653128,LOC107573076 coding upstream 635 2360768 ~ 2363564 (-)
tmem267 si:busm1-79m10.4,LOC107653487,LOC107702605,LOC107756535,LOC107750222,LOC107554236,LOC107554852 coding upstream 422018 2782151 ~ 2787777 (-)
rassf6 LOC107750196,LOC107554850,LOC107554244,LOC107756540,LOC107653501 coding upstream 429420 2789553 ~ 2796224 (-)
musk musk,LOC107653500 coding upstream 436712 2796845 ~ 2808986 (-)
lpar1 lpar1,LOC107554848,LOC107723319,LOC107756539,LOC107554242 coding upstream 469844 2829977 ~ 2850728 (-)
G74345 NA non-coding downstream 997 2350461 ~ 2350666 (-)
G74346 NA non-coding downstream 1972 2349335 ~ 2349691 (-)
G74324 NA non-coding downstream 100782 2248148 ~ 2250881 (-)
G74306 LOC107738848,LOC107743003,LOC107558707,LOC107663452,LOC107548653 non-coding downstream 158362 2191090 ~ 2193301 (-)
G74320 LOC107743020,LOC107663454,LOC107738849,LOC107548654,LOC107558708,LOC107667276 non-coding downstream 161505 2187668 ~ 2190158 (-)
G74364 NA non-coding upstream 93025 2453158 ~ 2454862 (-)
G74367 NA non-coding upstream 99679 2459812 ~ 2460152 (-)
G74436 NA non-coding upstream 420509 2780642 ~ 2781516 (-)
G74455 NA non-coding upstream 529312 2889445 ~ 2889948 (-)
G74459 NA non-coding upstream 689099 3049232 ~ 3049518 (-)
LOC122352692 NA other downstream 154234 2194085 ~ 2197429 (-)
adamts6 adamts6,LOC107744255,LOC107685101,LOC107713302 other downstream 504761 1774223 ~ 1846902 (-)
nrarpa nrarpa,nrarp other downstream 863655 1483399 ~ 1488008 (-)
G74031 NA other downstream 877785 1466751 ~ 1473878 (-)
G74058 NA other downstream 902777 1445323 ~ 1448886 (-)
LOC122352587 cntfr,LOC107554853,LOC107756542 other upstream 356964 2717097 ~ 2767195 (-)
LOC122353137 palm2,LOC107702598,LOC107715893,LOC107732273,LOC107653494,LOC107569382 other upstream 977206 3337339 ~ 3377784 (-)
hnrnpd LOC107702593,LOC107715890,LOC107573849 other upstream 1241479 3601612 ~ 3607788 (-)
LOC122352741 diras2,LOC107560410,LOC107736992,LOC107702570,LOC107558266,LOC107715878,LOC107670053 other upstream 1545481 3905614 ~ 3912742 (-)
LOC122352369 colgalt1,LOC107672476,LOC107711180,LOC107757371,LOC107670492,LOC107567242,LOC108429625,LOC107587993 other upstream 2659174 5019307 ~ 5028513 (-)

Expression


Co-expression Network