sigmar1 (sigmar1,LOC107653128,LOC107573076)


Basic Information

Item Value
gene id sigmar1
gene name sigmar1,LOC107653128,LOC107573076
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 2360768 ~ 2363564 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250128.1
GGCGTGACGTCACCTCGCGTCATCGCCCGTCACCTTTCATGTTTGCCATGCTGTGTGTCTGAATGAAGTCTGTTTAATGTCTTTAGCAATCTTAGACAGCGGTTTCCTTTTAAACAATCGTTTGTGCCCGGATTACGATGTCTGTAATAAGATTTATTCTAAAGACGGTGGTGGTTCTCGGGTTTCTGGTGTTGTCAGTTCAGTTTATAAGGTACTGGATGGCAAATAAACAATATGTCTTTACAAAAGAAGATGTTGCCAAGTTAGCAAGGCAGTATGCAGGCCAGGACCACGAGCAGGCCTTCTCTAAGGTGGTGGTGGAGCTGAGGAAGAGGTATCCGGGTCACATCCTGCCCGATGAGGACCTGCAGTGGGTGTTCGTGAACGCCGGCGGCTGGATGGGCTCCATGTGTCTGCTGCACGCTTCTCTCACAGAGTACGTGCTGCTGTTCGGGACGGCTGTGGACACGGGCGGACATTCAGGTCGTTACTGGGCAGAAATATCAGACACCATCATTTCCGGAACGTTCAGGCAATGGAAAGAAGGAACCACTAAAAGCGAGACGTACTATCCAGGGGAAACTATCGTGCACGCGGCGGGAGAAGCCACATCAGTGCAGTGGAGCGCCGGGACGTGGATGGTGGAGTACGGCCGAGGATTCATTCCCTCCACGCTGGGTTTCGCTCTGGCCGACACCGTCTTCAGCACCCAGGACTTTTTAACACTGTTTTATACCGTACGCGTGTATGTGAAGAGTATGATCCTGGAGGCTAGCACTTTCCTCACCGACACCGGCGTCCTCTGAAAGAGGAGAACCGGCGGCTCGTCGTATTGGATGTATGGAAAGCACTTAATGTAATCACTTTTCCAGCtattaaaggttttattttccGTACTGTACAAAGAGTTTATCAAACGTCTTTTCTAAAGGTAAAACACATTTTCGATCAACACCCTGTTTGTGGTCCGGTGTCTGTGTTTGAATGTGGCGAGATGTTTTAGCAGCTCAATACTGTCCAGAAACGGTTATTACGAGGTATGGGGGGGAataaagaaaattcaaaagGTAGCTTTCTGTATTTCCAGATCACACTCTTTGCACCTTTAATATACTGTGAATATTAattgttgctttatttttcataagaTACATTGTTCAAAATCTGTCCAATCTGTTCAGCCTGCAGTCGCTTCCAGAATAAACCTATTAATTAGTATTGTT

Function

symbol description
sigmar1 Acts upstream of or within response to wounding. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in gut; head; muscle; and retina. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis type 16 and distal spinal muscular atrophy 2. Orthologous to human SIGMAR1 (sigma non-opioid intracellular receptor 1).

NR:

description
sigma non-opioid intracellular receptor 1

GO:

id name namespace
GO:0006869 lipid transport biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005637 nuclear inner membrane cellular_component
GO:0005640 nuclear outer membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20719 SIGMAR1; sigma non-opioid intracellular receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250128.1 True 1223 mRNA 0.47 4 2360768 2363564

Neighbor

gene id symbol gene type direction distance location
katnal2 katnal2,LOC102797751,LOC104955398,LOC107573073 coding downstream 635 2351663 ~ 2360133 (-)
si:dkey-88l16.3 LOC107667258,LOC107738845,LOC107743196,LOC107548646 coding downstream 131778 2198983 ~ 2228990 (-)
parm1 NA coding downstream 174725 2181795 ~ 2186043 (-)
sh3bp2 sh3bp2,LOC107667261,LOC107705055,LOC107558670,LOC107743173,LOC106568140 coding downstream 236036 2107110 ~ 2124732 (-)
vldlr vldlr,LOC107705052,LOC107548665,LOC107558669,LOC107667264 coding downstream 255479 2086121 ~ 2105289 (-)
tmem267 si:busm1-79m10.4,LOC107653487,LOC107702605,LOC107756535,LOC107750222,LOC107554236,LOC107554852 coding upstream 418587 2782151 ~ 2787777 (-)
rassf6 LOC107750196,LOC107554850,LOC107554244,LOC107756540,LOC107653501 coding upstream 425989 2789553 ~ 2796224 (-)
musk musk,LOC107653500 coding upstream 433281 2796845 ~ 2808986 (-)
lpar1 lpar1,LOC107554848,LOC107723319,LOC107756539,LOC107554242 coding upstream 466413 2829977 ~ 2850728 (-)
LOC122352946 epha5,LOC107702602,LOC108428864,LOC107709147 coding upstream 534787 2898351 ~ 2964433 (-)
G74345 NA non-coding downstream 10102 2350461 ~ 2350666 (-)
G74346 NA non-coding downstream 11077 2349335 ~ 2349691 (-)
G74324 NA non-coding downstream 109887 2248148 ~ 2250881 (-)
G74306 LOC107738848,LOC107743003,LOC107558707,LOC107663452,LOC107548653 non-coding downstream 167467 2191090 ~ 2193301 (-)
G74320 LOC107743020,LOC107663454,LOC107738849,LOC107548654,LOC107558708,LOC107667276 non-coding downstream 170610 2187668 ~ 2190158 (-)
G74364 NA non-coding upstream 89594 2453158 ~ 2454862 (-)
G74367 NA non-coding upstream 96248 2459812 ~ 2460152 (-)
G74436 NA non-coding upstream 417078 2780642 ~ 2781516 (-)
G74455 NA non-coding upstream 525881 2889445 ~ 2889948 (-)
G74459 NA non-coding upstream 685668 3049232 ~ 3049518 (-)
LOC122352692 NA other downstream 163339 2194085 ~ 2197429 (-)
adamts6 adamts6,LOC107744255,LOC107685101,LOC107713302 other downstream 513866 1774223 ~ 1846902 (-)
nrarpa nrarpa,nrarp other downstream 872760 1483399 ~ 1488008 (-)
G74031 NA other downstream 886890 1466751 ~ 1473878 (-)
G74058 NA other downstream 911882 1445323 ~ 1448886 (-)
LOC122352587 cntfr,LOC107554853,LOC107756542 other upstream 353533 2717097 ~ 2767195 (-)
LOC122353137 palm2,LOC107702598,LOC107715893,LOC107732273,LOC107653494,LOC107569382 other upstream 973775 3337339 ~ 3377784 (-)
hnrnpd LOC107702593,LOC107715890,LOC107573849 other upstream 1238048 3601612 ~ 3607788 (-)
LOC122352741 diras2,LOC107560410,LOC107736992,LOC107702570,LOC107558266,LOC107715878,LOC107670053 other upstream 1542050 3905614 ~ 3912742 (-)
LOC122352369 colgalt1,LOC107672476,LOC107711180,LOC107757371,LOC107670492,LOC107567242,LOC108429625,LOC107587993 other upstream 2655743 5019307 ~ 5028513 (-)

Expression


Co-expression Network