loxl2a (loxl2a,LOC107720722,LOC107678026,LOC107553706,LOC107705082,LOC107687596)


Basic Information

Item Value
gene id loxl2a
gene name loxl2a,LOC107720722,LOC107678026,LOC107553706,LOC107705082,LOC107687596
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 6515997 ~ 6537995 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250136.1
CAGATTGCAGTGCTGGGGGGAGGCGGCGAAACCCGTTTAAAAGTGTTGCAGGATACTGAGAGAAATCAGCGCTGCTGCATCCAGCTGCGGGTGTAACTCGGAAGACGCCGTTACTTCACAACGATTTCTGAGGTGAAAGTTTTGCCATGGCGGTCTTTTCTGCATTGTGCATCTTTAGTCTCTTGGCTTTGGTTCAAGCCCAGTCTCAGTCCCAGCAACCCAAGATTCAACTCCGCCTTGCGGGTAGTAAACGCAAGCATTACGAGGGTCGTCTGGAGGTCTCCTACAACAACGAATGGGGGACTGTCTGTGATGATGACTTCTCCATTGAAGCTGCTCACGTCGCATGCAGGGAGCTTGGCTTCCTGGGCGCTGTGGCTTGGTCCGCATCTGCAAAATTTGGACAAGGAGAAGGACGCATTTGGCTGGACAATGTCCATTGCACGGGAAGAGAGAAATCTTTAGCTGAATGTCCCTCAAATGGCGTAGGGGTGTCAGACTGCCGACACAGCGAGGACGTTGGGGTGATTTGCAATCAGAAGCGCATCCCCGGCCACAGGTTCATCAATACCATGAACAACAATGTTGAGACTCTCGAAGAACGGGTGGAAGAAATCCGTATAAGACCCATTTCATCCCACCTCAAGCGCATACCCGTCACGGAAGGCTACGTGGAGATTAAGGAACGGGGGAAATGGAGGCAAATCTGCGATGAGGAGTGGACCCCCCTGAACAGCCGAGTTGTCTGTGGAATGTATGGATTCCCCGGagagaaaaaatacaacaacaaagtCTACAAATCGCTGTCCATGCGCAAGAGAAAGAACTACTGGGGTTTCTCGGTGAACTGCACAGGAAATGAAGCCCACCTGTCCAGCTGTAGGCTGGGCAAACCCTTGGAGCCCAAGCGGAACGGCACATGTGGACGTGGCCTGCCTGTGGTGGTCAGCTGCGTGCCTGGAAGAGCTTTTGCCCCCTCACCCTCCACCGGCTTCCGCAAGGCTTACAGACCAGAGCAACCCCTGGTTCGTCTGCGTGGAGGTTCCAATATTGGTGAAGGAAGAGTGGAGGTGCTGAAGAATGGAGTCTGGGGAACTGTCTGTGATGATAACTGGAACATGAGGTCTGCCTCGGTCATGTGTCGTGAACTTGGCTTTGGAAGTGCCAAAGAAGCTCTCACTGGAGCTAAGTTAGGACAAGGAATGGGTCCCGTCCACATGAATGAGGTGGAGTGCTCTGGATTTGAGAAATCTCTCACTGACTGTTACTTCAATAACGATGCTCTGGGCTGCAGTCATGAGGAGGATGCCGCTGTTCGCTGTAATATACCTGCCATGGGTTTCCAGAAGAGGATACGCCTAAGCGGTGGAAGGAACCCGTATGAGGGACGTGTGGAGGTTCTGACTGAGAACAACGGCTCTCTGCATTGGGGAACCGTTTGTAGTGAAAACTGGGGGATGATCGAGGCCATGGTGGTTTGCAGACAGCTGGGTTTAGGCTTCGCCAGCCATGCGTTTCAGgagACGTGGTACTGGGCTGGAGATGCGAGTGCAGATAATGTTGTGATGAGTGGGGTCAGATGCTCAGGAACTGAGATGAGTCTTCCTCAGTGTCTTCATCACGGCAAACACATCAGCTGTCCCAAAGGAGGAGGCCGCTTCGCTGCTGGGGTCTCCTGCTCTGATGCGGTTCCTGACCTGGTGCTGAACGCTCAGCTGGTAGAGCAGACCACCTATCTGGAGGACCGGCCCATGTACGCTCTACAGTGTGCCATGGAGGAGAACTGCCTGTCCAGCACTGCCAAAAAGAACGACCACAGCTCCTACCGCCGCCTGCTCCGCTTCTCCTCCCAGATACACAACGTCGGCCAATCAGATTTCAGACCCAAACTGGGTTACCACGCCTGGACCTGGCACGAGTGTCACAGGCATTATCACAGCATAGAGGTTTTTACCCATTATGATCTGCTGAGTCTGAACGGCACCAAGGTGGCAGAGGGTCACAAGGCCAGTTTCTGTCTCGAGGACACTCAGTGTGACGAGGGTATTCAGAAACGGTATGCTTGTGCCAACTTTGGTGAACAGGGCATTACCGTGGGCTGCTGGGATACTTATAGACATGACATTGATTGTCAGTGGATTGATATCACAGATGTCAAACCAGGAGACTACATTTTCCAGGTGGTGATCAATCCTAACTACGACGTAGCCGAATCGGATTATACCAACAACGTTATGAAGTGCAAGTGCCGCTATGATGGATACAGGATATGGACGTACCAATGTCAAACAGGTGGCTCACGGAGTTCAGACATGGACGAATTCCCTGGAATGAGCAACCAGCTGAACTTCAGATAGGACGCAGTCAGGAAGGACAAAGGCTCTCGGTGGAGGACGCTGCAGGCTGTTAGACTCTTCAGACACGATTGACCACTAGAGAGACTCCAGCACTCTGCCCTTTTCAGGCTGAAGTATAGCACGTTCTTTCACGGTCCTCGCTATATCAAACTTGCTTTgaacagaaatgatttaaattccTGAAATGTACTGTACCTGCTGCCTTCATTTTCGGTGCTTGAAATGCTTGTTTGTTCAAATCCATACTGTAACGTTCAAACTAGGATTTCAATATTAAGTTTTCAATTCTTTCTGCATTATAACTTATTCGCAAAGCCTTTCATGAACTCGGCCACACTAATGGCCGCCAAACTTTTGTGGTTTATTCATCAAGCATgtcaaataatttattgttcaGTCAGGGATTACATTTTTGTCAGGTTTTGTGTATGCAATGTGAAACTATAATTTGTTGCAATTTTGTGAAGCATCTACCCTCTGTTTTATGAGGGTATCTATGACCAGTTCAATGGTTTCCAGATATACAGTGTGTTTATGACTGAACAACACATTGTTTTCTATAATAAAAGCAATTAATGTGTGTTA
>XM_043250137.1
AAACTGTGCAGACTTGTTGctctccaggaattgagtttgagaccaatgtTCTAAAGTCACCAAACCAGTGTCGGCCTCAACAGAATGCACTAGTGGTGAACTTAGATGCTAAATGCAGCTTGAAGAGGTCACAGGTCAGGACTTTCCACCAGGAGTAAAGACTCTCGAAGAACGGGTGGAAGAAATCCGTATAAGACCCATTTCATCCCACCTCAAGCGCATACCCGTCACGGAAGGCTACGTGGAGATTAAGGAACGGGGGAAATGGAGGCAAATCTGCGATGAGGAGTGGACCCCCCTGAACAGCCGAGTTGTCTGTGGAATGTATGGATTCCCCGGagagaaaaaatacaacaacaaagtCTACAAATCGCTGTCCATGCGCAAGAGAAAGAACTACTGGGGTTTCTCGGTGAACTGCACAGGAAATGAAGCCCACCTGTCCAGCTGTAGGCTGGGCAAACCCTTGGAGCCCAAGCGGAACGGCACATGTGGACGTGGCCTGCCTGTGGTGGTCAGCTGCGTGCCTGGAAGAGCTTTTGCCCCCTCACCCTCCACCGGCTTCCGCAAGGCTTACAGACCAGAGCAACCCCTGGTTCGTCTGCGTGGAGGTTCCAATATTGGTGAAGGAAGAGTGGAGGTGCTGAAGAATGGAGTCTGGGGAACTGTCTGTGATGATAACTGGAACATGAGGTCTGCCTCGGTCATGTGTCGTGAACTTGGCTTTGGAAGTGCCAAAGAAGCTCTCACTGGAGCTAAGTTAGGACAAGGAATGGGTCCCGTCCACATGAATGAGGTGGAGTGCTCTGGATTTGAGAAATCTCTCACTGACTGTTACTTCAATAACGATGCTCTGGGCTGCAGTCATGAGGAGGATGCCGCTGTTCGCTGTAATATACCTGCCATGGGTTTCCAGAAGAGGATACGCCTAAGCGGTGGAAGGAACCCGTATGAGGGACGTGTGGAGGTTCTGACTGAGAACAACGGCTCTCTGCATTGGGGAACCGTTTGTAGTGAAAACTGGGGGATGATCGAGGCCATGGTGGTTTGCAGACAGCTGGGTTTAGGCTTCGCCAGCCATGCGTTTCAGgagACGTGGTACTGGGCTGGAGATGCGAGTGCAGATAATGTTGTGATGAGTGGGGTCAGATGCTCAGGAACTGAGATGAGTCTTCCTCAGTGTCTTCATCACGGCAAACACATCAGCTGTCCCAAAGGAGGAGGCCGCTTCGCTGCTGGGGTCTCCTGCTCTGATGCGGTTCCTGACCTGGTGCTGAACGCTCAGCTGGTAGAGCAGACCACCTATCTGGAGGACCGGCCCATGTACGCTCTACAGTGTGCCATGGAGGAGAACTGCCTGTCCAGCACTGCCAAAAAGAACGACCACAGCTCCTACCGCCGCCTGCTCCGCTTCTCCTCCCAGATACACAACGTCGGCCAATCAGATTTCAGACCCAAACTGGGTTACCACGCCTGGACCTGGCACGAGTGTCACAGGCATTATCACAGCATAGAGGTTTTTACCCATTATGATCTGCTGAGTCTGAACGGCACCAAGGTGGCAGAGGGTCACAAGGCCAGTTTCTGTCTCGAGGACACTCAGTGTGACGAGGGTATTCAGAAACGGTATGCTTGTGCCAACTTTGGTGAACAGGGCATTACCGTGGGCTGCTGGGATACTTATAGACATGACATTGATTGTCAGTGGATTGATATCACAGATGTCAAACCAGGAGACTACATTTTCCAGGTGGTGATCAATCCTAACTACGACGTAGCCGAATCGGATTATACCAACAACGTTATGAAGTGCAAGTGCCGCTATGATGGATACAGGATATGGACGTACCAATGTCAAACAGGTGGCTCACGGAGTTCAGACATGGACGAATTCCCTGGAATGAGCAACCAGCTGAACTTCAGATAGGACGCAGTCAGGAAGGACAAAGGCTCTCGGTGGAGGACGCTGCAGGCTGTTAGACTCTTCAGACACGATTGACCACTAGAGAGACTCCAGCACTCTGCCCTTTTCAGGCTGAAGTATAGCACGTTCTTTCACGGTCCTCGCTATATCAAACTTGCTTTgaacagaaatgatttaaattccTGAAATGTACTGTACCTGCTGCCTTCATTTTCGGTGCTTGAAATGCTTGTTTGTTCAAATCCATACTGTAACGTTCAAACTAGGATTTCAATATTAAGTTTTCAATTCTTTCTGCATTATAACTTATTCGCAAAGCCTTTCATGAACTCGGCCACACTAATGGCCGCCAAACTTTTGTGGTTTATTCATCAAGCATgtcaaataatttattgttcaGTCAGGGATTACATTTTTGTCAGGTTTTGTGTATGCAATGTGAAACTATAATTTGTTGCAATTTTGTGAAGCATCTACCCTCTGTTTTATGAGGGTATCTATGACCAGTTCAATGGTTTCCAGATATACAGTGTGTTTATGACTGAACAACACATTGTTTTCTATAATAAAAGCAATTAATGTGTGTTA
>XM_043250138.1
CTGTGCAGACTTGTTGctctccaggaattgagtttgagaccaatgtTCTAAAGTCACCAAACCAGTGTCGGCCTCAACAGAATGCACTAGTGGTGAACTTAGATGCTAAATGCAGCTTGAAGAGGTCACAGACTCTCGAAGAACGGGTGGAAGAAATCCGTATAAGACCCATTTCATCCCACCTCAAGCGCATACCCGTCACGGAAGGCTACGTGGAGATTAAGGAACGGGGGAAATGGAGGCAAATCTGCGATGAGGAGTGGACCCCCCTGAACAGCCGAGTTGTCTGTGGAATGTATGGATTCCCCGGagagaaaaaatacaacaacaaagtCTACAAATCGCTGTCCATGCGCAAGAGAAAGAACTACTGGGGTTTCTCGGTGAACTGCACAGGAAATGAAGCCCACCTGTCCAGCTGTAGGCTGGGCAAACCCTTGGAGCCCAAGCGGAACGGCACATGTGGACGTGGCCTGCCTGTGGTGGTCAGCTGCGTGCCTGGAAGAGCTTTTGCCCCCTCACCCTCCACCGGCTTCCGCAAGGCTTACAGACCAGAGCAACCCCTGGTTCGTCTGCGTGGAGGTTCCAATATTGGTGAAGGAAGAGTGGAGGTGCTGAAGAATGGAGTCTGGGGAACTGTCTGTGATGATAACTGGAACATGAGGTCTGCCTCGGTCATGTGTCGTGAACTTGGCTTTGGAAGTGCCAAAGAAGCTCTCACTGGAGCTAAGTTAGGACAAGGAATGGGTCCCGTCCACATGAATGAGGTGGAGTGCTCTGGATTTGAGAAATCTCTCACTGACTGTTACTTCAATAACGATGCTCTGGGCTGCAGTCATGAGGAGGATGCCGCTGTTCGCTGTAATATACCTGCCATGGGTTTCCAGAAGAGGATACGCCTAAGCGGTGGAAGGAACCCGTATGAGGGACGTGTGGAGGTTCTGACTGAGAACAACGGCTCTCTGCATTGGGGAACCGTTTGTAGTGAAAACTGGGGGATGATCGAGGCCATGGTGGTTTGCAGACAGCTGGGTTTAGGCTTCGCCAGCCATGCGTTTCAGgagACGTGGTACTGGGCTGGAGATGCGAGTGCAGATAATGTTGTGATGAGTGGGGTCAGATGCTCAGGAACTGAGATGAGTCTTCCTCAGTGTCTTCATCACGGCAAACACATCAGCTGTCCCAAAGGAGGAGGCCGCTTCGCTGCTGGGGTCTCCTGCTCTGATGCGGTTCCTGACCTGGTGCTGAACGCTCAGCTGGTAGAGCAGACCACCTATCTGGAGGACCGGCCCATGTACGCTCTACAGTGTGCCATGGAGGAGAACTGCCTGTCCAGCACTGCCAAAAAGAACGACCACAGCTCCTACCGCCGCCTGCTCCGCTTCTCCTCCCAGATACACAACGTCGGCCAATCAGATTTCAGACCCAAACTGGGTTACCACGCCTGGACCTGGCACGAGTGTCACAGGCATTATCACAGCATAGAGGTTTTTACCCATTATGATCTGCTGAGTCTGAACGGCACCAAGGTGGCAGAGGGTCACAAGGCCAGTTTCTGTCTCGAGGACACTCAGTGTGACGAGGGTATTCAGAAACGGTATGCTTGTGCCAACTTTGGTGAACAGGGCATTACCGTGGGCTGCTGGGATACTTATAGACATGACATTGATTGTCAGTGGATTGATATCACAGATGTCAAACCAGGAGACTACATTTTCCAGGTGGTGATCAATCCTAACTACGACGTAGCCGAATCGGATTATACCAACAACGTTATGAAGTGCAAGTGCCGCTATGATGGATACAGGATATGGACGTACCAATGTCAAACAGGTGGCTCACGGAGTTCAGACATGGACGAATTCCCTGGAATGAGCAACCAGCTGAACTTCAGATAGGACGCAGTCAGGAAGGACAAAGGCTCTCGGTGGAGGACGCTGCAGGCTGTTAGACTCTTCAGACACGATTGACCACTAGAGAGACTCCAGCACTCTGCCCTTTTCAGGCTGAAGTATAGCACGTTCTTTCACGGTCCTCGCTATATCAAACTTGCTTTgaacagaaatgatttaaattccTGAAATGTACTGTACCTGCTGCCTTCATTTTCGGTGCTTGAAATGCTTGTTTGTTCAAATCCATACTGTAACGTTCAAACTAGGATTTCAATATTAAGTTTTCAATTCTTTCTGCATTATAACTTATTCGCAAAGCCTTTCATGAACTCGGCCACACTAATGGCCGCCAAACTTTTGTGGTTTATTCATCAAGCATgtcaaataatttattgttcaGTCAGGGATTACATTTTTGTCAGGTTTTGTGTATGCAATGTGAAACTATAATTTGTTGCAATTTTGTGAAGCATCTACCCTCTGTTTTATGAGGGTATCTATGACCAGTTCAATGGTTTCCAGATATACAGTGTGTTTATGACTGAACAACACATTGTTTTCTATAATAAAAGCAATTAATGTGTGTTA

Function

symbol description
loxl2a Predicted to enable calcium ion binding activity; copper ion binding activity; and protein-lysine 6-oxidase activity. Acts upstream of or within sprouting angiogenesis. Predicted to be located in several cellular components, including basement membrane; chromatin; and endoplasmic reticulum. Predicted to be active in extracellular space. Is expressed in eye; intersegmental vessel; midbrain; midbrain hindbrain boundary; and notochord. Orthologous to human LOXL2 (lysyl oxidase like 2).

NR:

description
PREDICTED: lysyl oxidase homolog 2A-like

GO:

id name namespace
GO:0006898 receptor-mediated endocytosis biological_process
GO:0032332 positive regulation of chondrocyte differentiation biological_process
GO:0002040 sprouting angiogenesis biological_process
GO:0030199 collagen fibril organization biological_process
GO:0001837 epithelial to mesenchymal transition biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0001935 endothelial cell proliferation biological_process
GO:0001666 response to hypoxia biological_process
GO:0043542 endothelial cell migration biological_process
GO:0005604 basement membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0016020 membrane cellular_component
GO:0005507 copper ion binding molecular_function
GO:0004720 protein-lysine 6-oxidase activity molecular_function
GO:0005044 scavenger receptor activity molecular_function

KEGG:

id description
K00280 LOXL2_3_4; lysyl oxidase-like protein 2/3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250136.1 True 2942 mRNA 0.50 14 6515997 6537995
XM_043250137.1 False 2512 mRNA 0.49 12 6515997 6532107
XM_043250138.1 False 2483 mRNA 0.49 12 6515997 6532104

Neighbor

gene id symbol gene type direction distance location
sfrp1b LOC107678049,LOC107687633,LOC107586121,LOC107705085,LOC107553708 coding downstream 16786 6494749 ~ 6499211 (-)
LOC122352455 LOC107677991,LOC107705074,LOC107688544,LOC107720593,LOC107553699 coding downstream 28273 6460188 ~ 6487724 (-)
LOC122352601 LOC107677974,LOC107720582,LOC107705076,LOC107553700,LOC107586208,LOC107688554 coding downstream 95833 6411676 ~ 6420164 (-)
pbdc1 pbdc1,LOC107678025,LOC107730415,LOC107687677,LOC107705089 coding downstream 131484 6383021 ~ 6384513 (-)
LOC122353231 LOC107730414,LOC107677976,LOC107553698 coding downstream 155342 6349220 ~ 6360655 (-)
tacc1 LOC107678021,LOC107553704,LOC107720721,LOC107687537 coding upstream 5573 6543568 ~ 6563433 (-)
ddhd2 ddhd2,LOC107553702,LOC107678022,LOC107586212,LOC107687560 coding upstream 29285 6567280 ~ 6574724 (-)
plpp5 plpp5,LOC107720719,LOC107678050,LOC107553701,LOC107705081,LOC107586127,LOC107687571 coding upstream 37426 6575421 ~ 6579948 (-)
nsd3 whsc1l1,LOC107720716,LOC107687514,LOC107705078,LOC107678004 coding upstream 42626 6580621 ~ 6601391 (-)
rassf2b LOC107720572,LOC107708653,LOC107687490,LOC107586133,LOC107678048 coding upstream 93686 6631681 ~ 6638407 (-)
G75294 NA non-coding downstream 133556 6380936 ~ 6382441 (-)
G75297 NA non-coding downstream 163113 6352535 ~ 6352884 (-)
G75209 NA non-coding downstream 238667 6272225 ~ 6277330 (-)
G75191 NA non-coding downstream 360221 6148920 ~ 6155776 (-)
G75190 NA non-coding downstream 367488 6145846 ~ 6148509 (-)
G75366 NA non-coding upstream 107929 6645924 ~ 6648670 (-)
G75429 NA non-coding upstream 491998 7029993 ~ 7082458 (-)
G75433 NA non-coding upstream 540560 7078555 ~ 7079365 (-)
G75445 NA non-coding upstream 569763 7107758 ~ 7231920 (-)
G75459 pcdh1a3,pcdh1a4,pcdh1a6,LOC107552014,LOC107720569,LOC107720570,LOC107742396,LOC107586180,LOC107677970,LOC107742394,LOC107742395,LOC107678002 non-coding upstream 589593 7127588 ~ 7148979 (-)
LOC122352369 colgalt1,LOC107672476,LOC107711180,LOC107757371,LOC107670492,LOC107567242,LOC108429625,LOC107587993 other downstream 1487484 5019307 ~ 5028513 (-)
LOC122352741 diras2,LOC107560410,LOC107736992,LOC107702570,LOC107558266,LOC107715878,LOC107670053 other downstream 2603255 3905614 ~ 3912742 (-)
hnrnpd LOC107702593,LOC107715890,LOC107573849 other downstream 2908209 3601612 ~ 3607788 (-)
LOC122353137 palm2,LOC107702598,LOC107715893,LOC107732273,LOC107653494,LOC107569382 other downstream 3138213 3337339 ~ 3377784 (-)
LOC122352587 cntfr,LOC107554853,LOC107756542 other downstream 3748802 2717097 ~ 2767195 (-)
si:ch211-113d22.2 si:ch211-113d22.2,LOC107677989,LOC107705073,LOC107586211,LOC107688532 other upstream 127 6538122 ~ 6540973 (-)
sprn2 LOC107578968,LOC107720715 other upstream 90430 6628425 ~ 6631188 (-)
G75454 LOC107552069,LOC107678002,LOC107586137,LOC107687386,LOC107742371,LOC108437806 other upstream 639329 7177324 ~ 7180821 (-)
LOC122352929 LOC107675999,LOC107677996,LOC107552059,LOC107720693 other upstream 986199 7524194 ~ 7528558 (-)
G75562 LOC107675999,LOC107720693,LOC107677996,LOC107552059 other upstream 992866 7530861 ~ 7544090 (-)

Expression


Co-expression Network