atg101 (atg101,LOC107751375,LOC107686213,LOC107589731,LOC107691654,LOC107577413)


Basic Information

Item Value
gene id atg101
gene name atg101,LOC107751375,LOC107686213,LOC107589731,LOC107691654,LOC107577413
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 12826922 ~ 12828717 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250185.1
AACCAACCGCTGGGATTATTACAACGCCAAACGGCACTGTCCCTCATCCCGCCCTGTACATGTGACGTGTgtttacaaaacaaaagcactccattgcaagaaaaaaaatatgcgcATCGACATTTCGTACGTAAGAAGCTTATTATAGGTCGTCATGAACTGTAGATCAGAAGTCCTGGAGGTGTCAGTGGAGGGCAGGCAGGTGGATGAGGCCATGCTGGCCCTCCTGCACACGATCCTCCTGCACCGCAGCACAGGGAAATTTCACTATAAAAAAGAGGGCACGTACTCCATCGGCACGGTGGGAACTCAAGACGTGGACTGCGACTTCATCGACTTTACATTCGTGCGAGTGTCTTCTGATGAGCTGGACAGGGTTATCAGGAAAGCGGTAGCCGAGTTTAAGGATGCTCTTGGTAATTCTGGGAGTGATGGCATGGGTCAGATCTCTTTGGAGTTCTACCAGAAGAAGAAGTCCCGCTGGCCCTTCTCAGACGAATGCATCCCGTGGGAGGTTTGGAGCATCAAGGTGAACGTGGTGAACCTGGCCAATGAACAGGAGCGTCAGATCTGCAGGGAGAAAGTTGGCGAGAAGCTCGGAGAGAAAGTTATCAACATCGTGGAGGTCATCAACCGCCACGAGTATCTTCCCAAGATGCCCACACAGTCGGAGGTGGACAATGTATTCGATACAAGTTTGAAAGACGTTCAGCCGTATCTGTACAAGATCACGTACCAGATCACTGACTCTCTGGGCACGTCAGTGAGCACGACCATGAGGAGGCTGATCAAAGACACGCTGGCATTGTAAAGGACAGTGAAACAGCTTCTTGGATGTTTATAATGATCGtctaaaaagagaaaatcacattaaattGTTCCTGAATGGGATTTACACTTTCCCTGTATAATAATGGTATCCAATAACTTTATATCAGCCAATTCAagcatattattgttatttcttttttttttt
>XM_043250186.1
gcactccattgcaagaaaaaaaatatgcgcATCGACATTTCAAGCTTATTATAGGTCGTCATGAACTGTAGATCAGAAGTCCTGGAGGTGTCAGTGGAGGGCAGGCAGGTGGATGAGGCCATGCTGGCCCTCCTGCACACGATCCTCCTGCACCGCAGCACAGGGAAATTTCACTATAAAAAAGAGGGCACGTACTCCATCGGCACGGTGGGAACTCAAGACGTGGACTGCGACTTCATCGACTTTACATTCGTGCGAGTGTCTTCTGATGAGCTGGACAGGGTTATCAGGAAAGCGGTAGCCGAGTTTAAGGATGCTCTTGGTAATTCTGGGAGTGATGGCATGGGTCAGATCTCTTTGGAGTTCTACCAGAAGAAGAAGTCCCGCTGGCCCTTCTCAGACGAATGCATCCCGTGGGAGGTTTGGAGCATCAAGGTGAACGTGGTGAACCTGGCCAATGAACAGGAGCGTCAGATCTGCAGGGAGAAAGTTGGCGAGAAGCTCGGAGAGAAAGTTATCAACATCGTGGAGGTCATCAACCGCCACGAGTATCTTCCCAAGATGCCCACACAGTCGGAGGTGGACAATGTATTCGATACAAGTTTGAAAGACGTTCAGCCGTATCTGTACAAGATCACGTACCAGATCACTGACTCTCTGGGCACGTCAGTGAGCACGACCATGAGGAGGCTGATCAAAGACACGCTGGCATTGTAAAGGACAGTGAAACAGCTTCTTGGATGTTTATAATGATCGtctaaaaagagaaaatcacattaaattGTTCCTGAATGGGATTTACACTTTCCCTGTATAATAATGGTATCCAATAACTTTATATCAGCCAATTCAagcatattattgttatttcttttttttttt

Function

symbol description
atg101 Predicted to be involved in autophagosome assembly. Predicted to act upstream of or within autophagy. Predicted to be located in cytoplasm. Predicted to be active in phagophore assembly site. Orthologous to human ATG101 (autophagy related 101).

NR:

description
PREDICTED: autophagy-related protein 101

GO: NA

KEGG:

id description
K19730 ATG101; autophagy-related protein 101

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250185.1 True 976 mRNA 0.47 3 12826922 12828717
XM_043250186.1 False 882 mRNA 0.47 3 12826922 12828632

Neighbor

gene id symbol gene type direction distance location
umodl1 LOC107686212,LOC107728833,LOC107589724 coding downstream 9325 12807284 ~ 12817597 (-)
dgat2 dgat2,LOC107746984 coding downstream 47133 12771426 ~ 12779789 (-)
vps26bl v26bl,LOC107588734,LOC107751386,LOC107691644,LOC108423787,LOC105024202 coding downstream 317014 12505012 ~ 12509908 (-)
fez1 fez1,LOC107691643,LOC107751387 coding downstream 326073 12491670 ~ 12500849 (-)
robo3 robo3,LOC107577175,LOC107751391,LOC107589390 coding downstream 396043 12311190 ~ 12430879 (-)
trim37 trim37,LOC107686133,LOC107577452,LOC107691657,LOC107589414,LOC107728810 coding upstream 55483 12884200 ~ 12900007 (-)
rabgef1 rabgef1,LOC107734461,LOC107577469,LOC107728875 coding upstream 72335 12901052 ~ 12908439 (-)
kctd7 kctd7,LOC107588867,LOC107686134,LOC107734471,LOC107577526,LOC107691660 coding upstream 79854 12908571 ~ 12912532 (-)
cux1a cux1a,LOC107728840,LOC107588830,LOC107734438,LOC107691661,LOC107686135,LOC107577496 coding upstream 86466 12915183 ~ 13028810 (-)
LOC122353147 LOC107686215,LOC107588848,LOC107728832,LOC107691662,LOC101885935,LOC107578652,LOC107734424 coding upstream 207317 13036034 ~ 13051363 (-)
G76912 NA non-coding downstream 148297 12678367 ~ 12678625 (-)
G76902 LOC107746985,LOC107751382 non-coding downstream 216824 12605219 ~ 12610098 (-)
LOC122353234 NA non-coding downstream 373271 12448542 ~ 12453651 (-)
G76755 hspa8,LOC100305036,LOC101075813,LOC105019107,LOC107662768,LOC107693988 non-coding downstream 1060712 11701871 ~ 11766210 (-)
G76693 NA non-coding downstream 1340494 11485906 ~ 11486428 (-)
G77153 NA non-coding upstream 192936 13021653 ~ 13103059 (-)
G77157 NA non-coding upstream 205024 13033741 ~ 13035585 (-)
G77208 NA non-coding upstream 381899 13210616 ~ 13210946 (-)
G77220 kl,LOC107577734,LOC107589796,LOC107728890 non-coding upstream 484477 13313194 ~ 13315574 (-)
G77245 NA non-coding upstream 499925 13328642 ~ 13328893 (-)
mogat2 mogat2,LOC107751377,LOC107691703,LOC107747029,LOC107686211,LOC107589716,LOC107579037 other downstream 37827 12782353 ~ 12789095 (-)
uvrag uvrag,LOC107691651,LOC107577365,LOC107686127,LOC107751378,LOC107589407 other downstream 57505 12678990 ~ 12769417 (-)
ccdc83 NA other downstream 1241962 11505310 ~ 11584960 (-)
LOC122352715 LOC107693960,LOC107747020,LOC107744618,LOC107699265 other downstream 1619670 11176569 ~ 11207252 (-)
G76625 NA other downstream 1788191 11017110 ~ 11038731 (-)
dclk1a dclk1a,dclk1,LOC107588999,LOC107728871,LOC107577778 other upstream 663556 13492273 ~ 13533064 (-)
sparta spg20,LOC107728829,LOC107589828,LOC107577790,LOC107697408 other upstream 709439 13538156 ~ 13543615 (-)
ypel2a LOC106603438,LOC106931471,LOC106940241,LOC101067200,LOC107659943 other upstream 814467 13643184 ~ 13654413 (-)
ovca2 ovca2,LOC107697430,LOC107743470,LOC107728834 other upstream 977387 13806104 ~ 13807819 (-)
G77440 dlg1,LOC107738847,LOC107659037 other upstream 1373545 14202262 ~ 14204127 (-)

Expression


Co-expression Network