rhbdd2 (rhbdd2,LOC107728880,LOC107686174,LOC107577912,LOC107697423,LOC107743386)


Basic Information

Item Value
gene id rhbdd2
gene name rhbdd2,LOC107728880,LOC107686174,LOC107577912,LOC107697423,LOC107743386
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 13681141 ~ 13684137 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250276.1
TCTAACGCGGAAGTTGTGGTTCGAGTGCTGGGAACTAGTATCTGAAACACGAAAAGGATAATAGCTTTTTAGAGTGTGTTGTAAATGATGCACATTCTGCATCCTGAAAATGTATAGCACTTCGAAAAGCTGGAAGAAGACGTTCGCAGATTTTGCACCAGATGTAGAGCTGACCTGTGGGGTAGCGATTGTGATCGTGCTGTCATGTGTTTTCAGTGCCATACCATATTACTTGGCTGTTTCAGAGCACTTTTTTAGTCTGGAGTCCAGTGCTGTCATCAGCGGCCATGTCTACAAACTCTTCACCTATTTCCTCTACCACAAGAATATGATGCTTTTATTCCTAAGTGCCATCCCGATGGCATTTCCCTGTAGCGGTCTGGAGCGAGGAATCGGAACGGTCAGATTTCTCTACCGGTCCCTCCTGCTGTCGTTAGTCTGTGGACTCTTACATGTGCTGCTTGAGTCGCTGCTGTTCTCCCCGTCCAGTAGGAGCTCAGTAAATGGGCTCATCCCATTAGCCCTGTCTGTCCTGGGAATGATGACCATCAATTCTGCTATGCGGAAAGCGTATATTATGGGCGTCAGTGTGCCTACCGCATCTCTCCCCTGGATTATCCTAGTAATTCTAACCCTATTCTTTCCAAACACTTTTTTCCTTTGCAACGTCCTGGCCATCATTACAGGAATGATACATGGAAAAGGATGGTTTTCGTTATTGGAGATGTCAGAATCTAGAGCTTCCGTCTTGGAGAAGAAGTTCCCTTTTCGCTTGCTAAAGCAGATTCCCGGTGTCCAGTTCATTCCTTCATCGACGGAAGAGCGCAAAAAGCCCCTTGACCTCACAGACGCTCCTCCAGGGTCGTACCCTGTTCAGGCCTACACTCCAGTAAACGCCACAAACGGTCAAGTTATAGGAAGCCTGCCCAACACATTCGATGGTTGGCCCGTCTCGCTGTATCCTCAACAGCAATACACATTTACTTCACCTCACGCTGGAGTCGGCATTGGTCACAATCATGGACATGGACACGGTCATGGTCACAGCCACGGGCATCATCATGGACACAGCCATCACACCGGCAGCCCATGGATGCCGATGTCCCCATACGCTCAGCATCAATTCAGGCCTCCAGTAAACTCAGGTCAGCCCTTCACTAAACTACCCCAGCCAGGACTGCCATTTATACCTCCCACCTCACAGTCAGAGCCTGGAGTGCCTGCTATTCCCACAACTCCTCCTGGAGCCCCTGTGTCATTGTCGTCCTAGAGATCTATTGCCTCATCTGCAGTGCCATTTGTTTATTGGTCATTTTATACAGCTGCCCTTCtgctaaagaacattttgtacCTTAAATTAAAACCTCAATGATGTAAA

Function

symbol description
rhbdd2 Predicted to enable serine-type endopeptidase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human RHBDD2 (rhomboid domain containing 2).

NR:

description
rhomboid domain-containing protein 2

GO: NA

KEGG:

id description
K09652 RHBDD2, RHBDL7; rhomboid domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250276.1 True 1378 mRNA 0.48 4 13681141 13684137

Neighbor

gene id symbol gene type direction distance location
prr11 LOC107728831,LOC107686171,LOC107589205,LOC107579091,LOC107743468,LOC107697420 coding downstream 19002 13659137 ~ 13662139 (-)
smg8 LOC107686170,LOC107589184,LOC107577889,LOC107743383,LOC107697419,LOC107728850 coding downstream 22454 13654755 ~ 13658687 (-)
pom121 pom121c,pom121,LOC107728848,LOC107697416,LOC107743381,LOC107577844,LOC107686167 coding downstream 42917 13628833 ~ 13638224 (-)
ripk4 ripk4,LOC107589146,LOC107577855,LOC107686166 coding downstream 58273 13612144 ~ 13622868 (-)
c10h21orf91 zgc:110006,LOC107697414,LOC107734464,LOC107686165,LOC107589110,LOC107728860 coding downstream 72989 13589309 ~ 13608152 (-)
gabrr3a gabrr3a,gabrr3,LOC107589257,LOC107697425,LOC107686176,LOC106563567,LOC106603079 coding upstream 15097 13699234 ~ 13710448 (-)
si:ch211-244c8.4 si:ch211-244c8.4,LOC107728884,LOC107686180,LOC107743390,LOC107697427,LOC107577989 coding upstream 70032 13754169 ~ 13758259 (-)
smg6 LOC107728864,LOC107589291,LOC107686181,LOC107578000,LOC107697428,LOC107743389 coding upstream 89707 13773844 ~ 13786662 (-)
LOC122352428 LOC107686199 coding upstream 327407 14011544 ~ 14014981 (-)
LOC122352429 LOC107578824,LOC107743443,LOC107697381,LOC107686201,LOC107743445,LOC107697382 coding upstream 332500 14016637 ~ 14017638 (-)
G77315 NA non-coding downstream 10695 13669972 ~ 13670446 (-)
LOC122352841 NA non-coding downstream 124484 13548254 ~ 13556657 (-)
G77294 NA non-coding downstream 124949 13555556 ~ 13556192 (-)
G77284 NA non-coding downstream 192308 13486267 ~ 13488833 (-)
G77245 NA non-coding downstream 352248 13328642 ~ 13328893 (-)
G77349 NA non-coding upstream 107184 13791321 ~ 13791934 (-)
G77347 NA non-coding upstream 115876 13800013 ~ 13800912 (-)
G77351 NA non-coding upstream 120346 13804483 ~ 13804892 (-)
G77352 NA non-coding upstream 120952 13805089 ~ 13805329 (-)
G77378 NA non-coding upstream 302798 13986935 ~ 13987166 (-)
ypel2a LOC106603438,LOC106931471,LOC106940241,LOC101067200,LOC107659943 other downstream 26728 13643184 ~ 13654413 (-)
sparta spg20,LOC107728829,LOC107589828,LOC107577790,LOC107697408 other downstream 137526 13538156 ~ 13543615 (-)
dclk1a dclk1a,dclk1,LOC107588999,LOC107728871,LOC107577778 other downstream 148077 13492273 ~ 13533064 (-)
mogat2 mogat2,LOC107751377,LOC107691703,LOC107747029,LOC107686211,LOC107589716,LOC107579037 other downstream 892046 12782353 ~ 12789095 (-)
uvrag uvrag,LOC107691651,LOC107577365,LOC107686127,LOC107751378,LOC107589407 other downstream 911724 12678990 ~ 12769417 (-)
ovca2 ovca2,LOC107697430,LOC107743470,LOC107728834 other upstream 121967 13806104 ~ 13807819 (-)
G77440 dlg1,LOC107738847,LOC107659037 other upstream 518125 14202262 ~ 14204127 (-)
G77441 dlg1l,LOC107653521,LOC107705307,LOC107660320 other upstream 520279 14204416 ~ 14208006 (-)
G77443 NA other upstream 550369 14234506 ~ 14264322 (-)
G77465 hyou1,LOC107691632,LOC107588517,LOC107747001,LOC107693979,LOC107577052 other upstream 655909 14340046 ~ 14343012 (-)

Expression


Co-expression Network