vps26bl (v26bl,LOC107588734,LOC107751386,LOC107691644,LOC108423787,LOC105024202)


Basic Information

Item Value
gene id vps26bl
gene name v26bl,LOC107588734,LOC107751386,LOC107691644,LOC108423787,LOC105024202
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 12505012 ~ 12509908 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250281.1
aTATTTACGTGGACTATCCCGGTAGTAAATTCGTTTCTGAAGCTTGTGTCTGTTTGTACATTGCCGAAAAATCCTCTgcatgtattaattaattaatatatgaaGAATTAGCTCGAAGCATTTTAAACAGCCTGTTTATAGACGTGCATGCATTGCAGAAGATAGAGCAGCTCGTTCGTGAACAGGACGCGATTGTATTGATGTGGAATTGGACCAGGTGTTAGAATACTAAAGGATTCCAGTCCAGCACAAGGTTTCGGGATGAGCTTCTTCAGTTTCGGACAAAGTGCTGAAATCGACATAGTCCTGAATGATGCAGAGACGAGAAAAAAGGCCGAGCACAAAACAGAAGACGGGAAAAAGGACAAATACTTTCTGTTTTACGACGGGGAGACAGTCTCTGGGAAAGTCAACGTTACCCTGAAAAACCCAGGAAAGAGGCTTGAGCATCAAGGGATCAAAATAGAGTTTATCGGGCAAATCGAGCTGTACTACGACAGAGGAAACCATCATGAATTTGTGTCTCTGGTTAAGGATTTAGCTCGGCCTGGAGAAATGGTTCAATCTCAGACCTTTGATTTTGAGTTCACACACGTGGAGAAACCGTACGAGTCCTACACAGGGCAGAATGTAAAATTACGctaTTTCCTGCGAGCGACCATCAGCAGGAGACTAAATGACATCTGCAAAGAGATGGACATTGTAGTGCATACACTCAGCACATATCCAGAACTCAACTCCTCCATAAAGATGGAGGTGGGAATTGAGGACTGTCTACACATTGAGTTTGAGTACAACAAGTCCAAGTATCACCTGAAAGATGTGATCGTAGGGAAGATCTATTTCCTGTTGGTGCGAATTAAGATCAAACACATGGAGATTGATATTATTAAACGGGAGACAACAGGGACGGGGCCGAATGTGTACCATGAAAACGACACCATTGCAAAGTACGAGATTATGGATGGAGCACCTGTGCGAGGCGAATCCATCCCCATCCGTCTTTTTTTGGCCGGGTACGAGATGACGCCGACCATGAGGGATATTAATAAGAAGTTCTCTGTTCGTTATTACCTGAATCTCGTGCTCATTGATGAAGAGGAAAGGCGTTACTTCAAACAACAGGAGATTACGCTATGGAGGAAGGGGGACATTGTGAGGAAAAGCATGTCCCATCAAGCTGCCATCGCCTCCCAGCGCTTCGAGGGTTCGGCGAGCGCAGAGAAAGCCCTCTCTCAAGCTAAAGAGGAAGACAACTAAACCTAACCACCTCTTCTCATCATCTCATGTGTGTATGCggcagagagagagtgtgtgtgtgtacagattTAAAGAAGCTGTGCGCTCCCAAAATAGACGGCAATGTAAACCTGATATTTCACATTCCTAAACACACCGGTTTATGATCAACAATTCCTAAGTAGCTTTTAAAAAGGGATTAATATatgaaaagcaaaaacacttattttaaaaaaccaCAAGTCGATATTTAGGGTTCCTCTGAGGTTGTTTACTTTTTGTCCGTCACCCTGGAATTAATTGACTGTgtatttttctgaaacatttcagCACTTCATctagacaaaacaaacacattccaCTCTCTATATTCCATTTACAGCCTTTTTTGACTTCTGTATTGAATGTTTTGTTATTGTAGATTGTTTTTTTCGTAACATATACATTTCATACAGtgttcagtttctttttaatgaaatggtttataactaaattatatttttagtgatttttttatatatatacacacacacacacagcatgcttACCAATACATGCCTTTTTACTTTTGTTGCCATTCCATAAATTATAAGCACTTGAGAGTTTTTGCCAATGTGATTTCAGTGTCTCCAGAGGGACCCTTCACTTCATATCAGACCAAACTTACAAAAACCTTTTTGCTCAGattcaataaatcaaataatttccCTACAGGTATGTAGCTAAACTAAAATGCAcctgaatttaatttttatttcgtCTGTCAGATTGTATTGATACAGTGATACTTTAACAAGCTCCTTTAACAAGCTTTTCaagtgtattaaaatagaattttaattcagtattaTCGCTTTTGAGGTTTTGGTACGATGAACCGAAATGTTTGTCGTTGTCGGGTAACACTTTACGATACGGTTCAAAATGCTAACAGTTAAAGGTCTCAAGAACTTGAAATTAAacgtaatgtttatttataaacgAATGAGCTGCTTATTTGTTAGTTTGTGTTGGTTAATGCAACATTACAAAAGTTAAcctgtttaatgtaaaaattgaCTATCGTTACGTTAAAGTTAACTTAAatcaagattaataaatgttaaaggatttttattgttagttcagTGTAACAAACTCGCAGAACAACCTTATCTTAAAGTGTTACTAAGTCATTGGCCGTTCTAACGCTTGTTTCCTGTCAATTCTAGAATTCAGGTGGcattaatgtcttattttagTTCTCATTTTTTTTACCAACACTGGAGATCAGCTCATATTACACGTCACAGTTCTAACCAGTTACTAACCAATGCGTACTTTAAACCTTATAAATCTTTGACCGTAACAGCACAGCTTAGCAAACGCTGAAGAAGTGCGTGATCAGGATGAGAAGCAGATGTGTTAACACTCAGAGCAGCGTAAGGGATGCATGTCCTGGAAGTGATTGCGCACCCATTTTAAGATTGCAGGCTCATTAAGGCCGCCTTGTTAGTGGCTCTCATTGTCGTGAATATTTCTTGTCGTGTCAGGAGCGTGGAGGTGTTCATCTGTCCGAAAAACCAGGATGAATCATCTCACGATGAGCTGCCTTTTGTGCGACCGCGATTTCACAATATCGGTTTTTGTTAGCGCTTCCATTCACTTACATGGAAAACGATCCTTGTGACTGGCGACGGACGTTAACTAAGAAAGATCGTGACATGCTGATCACACGCTAAGTTCCGCATATTGTTTGATAATTGcctttttactttacattaacCTTGCTTTTGGTGTCAAACTAGCAAAATACGGCAAGGCCTGTCACAGAGGGCTATGTGTAAGCGATCTCTCTGCTGTCTGTTtagaaaaaacgaaaaaaaaccctaaaaactaAAGCATCTCTTTGCAGAAAACTCATGGCTCTATGTGCCGCACTGTGTTTACTGACTTCACCTACATGATTTAATAAATTAGCACTGTGTATCctttcaaaaacaaagaagGAACGAGAATTAGCTGTTTCCTaactttctttacatttatcatCGTGCAAAAAAAGTGCTGCTTAAAACGGCATTAGATAAccatatttctatattaatattatgtatgtacagtatatatttacagaattGTAAGTATAtgattttgaaatgatttagAAATCGCTCTAAGGTACTAGCAGAGTTTACAAAATGGATTCTAGAAGATTCTAGAACTGTGCTAATGTAAAATATGAGTGCAGAACACACACAACCTAACTGCTCTTTCAGTACTTGTGCTGTACatgacatttgtttttactctgattcctcagattaaaaaaaaagaagaagaaaaaacgcTCATCTTTTCCCTCATAGAAA

Function

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 26B-like

GO:

id name namespace
GO:0007034 vacuolar transport biological_process
GO:0015031 protein transport biological_process
GO:0030904 retromer complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K18466 VPS26; vacuolar protein sorting-associated protein 26

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250281.1 True 3590 mRNA 0.38 6 12505012 12509908

Neighbor

gene id symbol gene type direction distance location
fez1 fez1,LOC107691643,LOC107751387 coding downstream 4163 12491670 ~ 12500849 (-)
robo3 robo3,LOC107577175,LOC107751391,LOC107589390 coding downstream 74133 12311190 ~ 12430879 (-)
LOC122352422 pknox2,LOC107686111,LOC107691639,LOC107747045,LOC107686209,LOC107751409 coding downstream 221425 12217090 ~ 12283587 (-)
opcml opcml,LOC107746995,LOC107588660,LOC107686109,LOC107691701,LOC107751394,LOC107577150 coding downstream 318916 12065931 ~ 12186096 (-)
lim2.1 lim2.1,LOC107579014,LOC107589671,LOC105028969,LOC105900331 coding downstream 717339 11786410 ~ 11787673 (-)
dgat2 dgat2,LOC107746984 coding upstream 261518 12771426 ~ 12779789 (-)
umodl1 LOC107686212,LOC107728833,LOC107589724 coding upstream 297376 12807284 ~ 12817597 (-)
atg101 atg101,LOC107751375,LOC107686213,LOC107589731,LOC107691654,LOC107577413 coding upstream 317014 12826922 ~ 12828717 (-)
trim37 trim37,LOC107686133,LOC107577452,LOC107691657,LOC107589414,LOC107728810 coding upstream 374292 12884200 ~ 12900007 (-)
rabgef1 rabgef1,LOC107734461,LOC107577469,LOC107728875 coding upstream 391144 12901052 ~ 12908439 (-)
LOC122353234 NA non-coding downstream 51361 12448542 ~ 12453651 (-)
G76755 hspa8,LOC100305036,LOC101075813,LOC105019107,LOC107662768,LOC107693988 non-coding downstream 738802 11701871 ~ 11766210 (-)
G76693 NA non-coding downstream 1018584 11485906 ~ 11486428 (-)
G76657 NA non-coding downstream 1214172 11218169 ~ 11290840 (-)
G76902 LOC107746985,LOC107751382 non-coding upstream 95311 12605219 ~ 12610098 (-)
G76912 NA non-coding upstream 168459 12678367 ~ 12678625 (-)
G77135 ppm1e,LOC107728886,LOC107686131,LOC107588822,LOC107734442,LOC107691656,LOC107577402 non-coding upstream 286756 12796664 ~ 12880735 (-)
G77153 NA non-coding upstream 511745 13021653 ~ 13103059 (-)
G77157 NA non-coding upstream 523833 13033741 ~ 13035585 (-)
ccdc83 NA other downstream 920052 11505310 ~ 11584960 (-)
LOC122352715 LOC107693960,LOC107747020,LOC107744618,LOC107699265 other downstream 1297760 11176569 ~ 11207252 (-)
G76625 NA other downstream 1466281 11017110 ~ 11038731 (-)
rps6kb1a rps6kb1a,LOC107747022,LOC107548877,LOC107744622,LOC107699259,LOC107693887 other downstream 1521274 10972881 ~ 10983738 (-)
G76498 NA other downstream 2024823 10478059 ~ 10480189 (-)
uvrag uvrag,LOC107691651,LOC107577365,LOC107686127,LOC107751378,LOC107589407 other upstream 169082 12678990 ~ 12769417 (-)
mogat2 mogat2,LOC107751377,LOC107691703,LOC107747029,LOC107686211,LOC107589716,LOC107579037 other upstream 272445 12782353 ~ 12789095 (-)
dclk1a dclk1a,dclk1,LOC107588999,LOC107728871,LOC107577778 other upstream 982365 13492273 ~ 13533064 (-)
sparta spg20,LOC107728829,LOC107589828,LOC107577790,LOC107697408 other upstream 1028248 13538156 ~ 13543615 (-)
ypel2a LOC106603438,LOC106931471,LOC106940241,LOC101067200,LOC107659943 other upstream 1133276 13643184 ~ 13654413 (-)

Expression


Co-expression Network