bnip3lb (bnip3lb,LOC107560522,LOC107678042,LOC107744138,LOC107687791,LOC107561399,LOC107720674)


Basic Information

Item Value
gene id bnip3lb
gene name bnip3lb,LOC107560522,LOC107678042,LOC107744138,LOC107687791,LOC107561399,LOC107720674
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 5908013 ~ 5918050 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250302.1
GCGCGCAGGTCCAAATGTGCGTGTGCGCGCTCGCGTGTATGCGTGCGCAGAGTGTGTTCGCGCGGTGCTGACAGTCTTATGCAAGCCGCCCTGCACAGAGCCACGATGTCCGACGCTGCTGCTCCGGCAGACAACAACGGGGAGCCTGGGTTAAACGGATCGTGGGTAGAGCTGGAGATGAACAGAAACGCCgcatctctctcttcctccagcGCTTCGGTGCCGCCCCCTTTAGCCCAGGTAGtagaggaggaggatgatgggATGGTGGGGGGGCTAGAACATGTTCCCTCGTCATCTTCAATCCACAACGGAGACATGGAAAAAATCCTGCTAGATGCCCAGCACGAATCCAGCCGCAGCAACTCCTCATGCGACAGCCCTCCTCGACCTCACAGTCCTCAGGACGAAGGCCAGATCATTTTCGACGTGGACATGAGGAGGGACAGTCAGGAGGAAGTCATGGAGAAGATCAGAGATGATGACATCTTAATGAAGGATTCAGACCGCGTCGCAGACTGGTCAAGTAGACCAGAGAATATTCCACCTAAGGAGTTTCATTTCCGGCACCCGCGGCGTTCAGTGACTCTCAGCATGAGGAAGACGGGAGCCATGAAGAAAGGAGGCATCTTCTCTGCCGAGTTCCTCAAAGTGTTTATCCCCTCGCTGCTTCTGTCCCACATCCTGGTCCTGGGTCTCGGGGTCTATATCGGGAAAAGACTGACAACTCCCCCTGCTAGCTCCATCTGAACACCGATCCGATCAAGTGCCTCAGGCATGGCCCAGGTGGATTAGGGAGAAGGTTGCAGTTTGTACGAAGAAGCCCCCCTGCTTCCCCTTTCTACCCCTTTTAGTCTTTTCAGCAACATTTCTCCCTTTTTTAGTAATTCCTTCAACTAGTCTTTCCATTTTGAGGAAAATAAGTGATAAACTTCTCATTTTTAGGCCCTTTCTCGTTTACCATTTTTGTATCCTTTTCGCCAGTTGTGAATGTTCTAGCAGTACCACATTTCATTTTCGAAGCGTTTGGAGCGTTGCATTAAACCAAATTCGCACACGCAGGCTCCACACTGGCTCAATTCAACTAGGAGGCAAAAAACATCCCATTTTGGTTCAATCACACGACCCAAAAGGTGATAAAGGATCCCCCCCTAGTTCACCCTCCTTAAAATGGAATCAACCAAAATATGTGACTTATCGAGGTTATACGAGCATGTCTGAGCGCTAgctaagattttatttattaatacaaacgCTACCAATTTAGTTCTTTTATTGACTTCAAGGGTGGAACGACTCGGAAGTCGTTTAGGAAAAGACAGGGCTCTCCGTAGACCCCAAACTCATTTGGTGAGGATGGAAAATGAATAGCACAGACGTAATGTTTATGACCGTATCACGTGCAATTTTATACCAAGTTTGCATAATCTTTTACACAACCCTGACGGAGACAACGCCTGTTACATTGAatcatctgatttttttttgtttatatatatatacacctataTATATCATCTCATAAACATAGATAAAAATCTGTCTGATGGGGCTGATGGATCcctgtatgaaaaaaaaaaaaagttttatctgtctctctgtttgttgTGTCGTTTTGTTAGTTTCCTTCATGTACATATCAGGACCTTTCGAACTAGGCTTCTACAACATGGCCTACTTTGCGATACGGCCCAATGTACCAATAGCGTTCAAAGCTGAGCGCATCTTGCTAATAAGGACAACAGTGTTTTGCTATGCTGTCATAGCCGTGTCAGACTTTCTGGAATGGTGTGGTACACTCTAATACGTCTCAGTCTCGTactgatttaaagcatttccacGCTGTTAGCTTGAGGACAGACAAGCCTTTCTTCAGTTTATAGGAATAGCTCATTGAAAAATTACATACTGCCGTTATGTACTCAACTTTATCTCGTTTCTACACTTTTCTTTTATCTTGAACGGCGTCcgtgctgctcttttccatacagtgGAAGCTAATGGAGGTAAACTGGAAAAATAGCAGCATGGGTTTCTTTCAGATATCTCCAAACGTTTGAATAATGATCGCAGAATTTGGATTACTTGCACAGTGGCGCACAATTAGTGAACACTAACACTCCAGCACCACAGCATCCATCTTTGGGAACAGGGTTTAACTTAGGGTGAACTATCCTCAAGTCTAGCTGTGTTTTTGTCCCTTTCTAAGTGTATTTTTGACGCGTGGACACGTTTCCTTTGGTCTATCTGAGGATCTACTTCTCCTCGAGTATGGCtgccaaaaaaacaactgaGAGCTCAACTCTTGTGAACTCTGTGCCTCGTTTCCTTCGTCATGTTTGATACGGCGTCCTGTTCATTTCCTGTCATCATGTGCGTGTTTTGTGCCACAAGCTCgtcgtttttgttgttttggtgtACGTGAATTTTGGAAGGTTTCTTTGGATATTTTTTAAGTCTTGAACAATCGAGGCGAACTAGAAGAGGAGGTACGTGATAGTTAAaggttttagttattttatttgtattggcGTTACAATTGTGGCTGGAAAGAAACCTCGTTTGTGGAGACACTTTCTTCAGACTGCAATGCGATGATAAAATGAATTGTAAGCTTATTGATTTGAtacaccttttttttccccctccactGTTGGACAATGACAaagttttcaaattaaaaatttaaagaacaa

Function

symbol description
bnip3lb Acts upstream of or within heart looping; negative regulation of heart contraction; and positive regulation of apoptotic process. Predicted to be located in membrane and mitochondrial envelope. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum; mitochondrial outer membrane; and nuclear envelope. Is expressed in several structures, including brain; optic cup; pectoral fin bud; pronephric duct; and somite. Orthologous to human BNIP3L (BCL2 interacting protein 3 like).

NR:

description
BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like

GO:

id name namespace
GO:0043065 positive regulation of apoptotic process biological_process
GO:0045822 negative regulation of heart contraction biological_process
GO:0001947 heart looping biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005740 mitochondrial envelope cellular_component

KEGG:

id description
K15465 BNIP3L; BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250302.1 True 2696 mRNA 0.45 6 5908013 5918050

Neighbor

gene id symbol gene type direction distance location
ppp2r2ab ppp2r2ab,LOC107744137,LOC107720666,LOC107678035,LOC107560523,LOC107687801 coding upstream 1137 5892603 ~ 5906876 (+)
prkab1a prkab1a,prkab1,LOC107713388,LOC107555518,LOC103357303 coding upstream 354373 5548705 ~ 5553640 (+)
phf24 phf24,LOC107677982,LOC107713387,LOC107744162 coding upstream 362425 5519168 ~ 5545588 (+)
pigo pigo,LOC107713385,LOC107686475,LOC107744133,LOC107687847 coding upstream 416284 5482765 ~ 5491729 (+)
slc20a1b LOC107686476,LOC107744132,LOC107687859,LOC107713386,LOC107555522 coding upstream 431008 5464957 ~ 5477005 (+)
dpysl2b dpysl2,dpysl2b,LOC107678023,LOC107560521,LOC107687778,LOC100705567,LOC108277094,LOC103362090,LOC108427246 coding downstream 3109 5921159 ~ 5942002 (+)
tmem230a tmem230,tmem230a,LOC107677999,LOC107744140,LOC103035677,LOC108427245 coding downstream 37061 5955111 ~ 5956835 (+)
igsf9a igsf9a,LOC107744139,LOC107678046,LOC107720681,LOC107687761,LOC107561402,LOC107560520 coding downstream 40789 5958839 ~ 5984926 (+)
vsig8a vsig8a,LOC107730417,LOC107678041,LOC107553719,LOC107688578,LOC107720793 coding downstream 214039 6132089 ~ 6139635 (+)
atp6v1b2 atp6v1b2,LOC107687718,LOC107678016,LOC108277294,LOC103034689,LOC108433525 coding downstream 221938 6139988 ~ 6147864 (+)
G75097 NA non-coding upstream 486 5907179 ~ 5907527 (+)
G75083 NA non-coding upstream 185986 5663157 ~ 5722027 (+)
G75081 NA non-coding upstream 244938 5657359 ~ 5663075 (+)
G75077 NA non-coding upstream 264247 5643549 ~ 5643766 (+)
G75076 NA non-coding upstream 264912 5642889 ~ 5643101 (+)
G75102 NA non-coding downstream 24224 5942274 ~ 5975558 (+)
G75192 NA non-coding downstream 261156 6179206 ~ 6204921 (+)
LOC122352660 NA non-coding downstream 268097 6186147 ~ 6190440 (+)
G75230 NA non-coding downstream 624038 6542088 ~ 6544245 (+)
G75236 LOC107678050 non-coding downstream 660122 6578172 ~ 6579929 (+)
G75062 LOC107744182,LOC107678054,LOC107567441,LOC107713390,LOC107687817 other upstream 345928 5560651 ~ 5562085 (+)
ccl19b LOC107744181,LOC107677997,LOC107567444,LOC107555521,LOC107713300,LOC107688602,LOC107713257 other upstream 407625 5498647 ~ 5500388 (+)
G74965 NA other upstream 649190 5256838 ~ 5258823 (+)
LOC122352567 ywhah,LOC107562560,LOC107744159,LOC107713377,LOC107555530,LOC107688000 other upstream 657876 5238279 ~ 5250137 (+)
LOC122352404 LOC107670527,LOC107567246,LOC107587997,LOC107757377,LOC107711240,LOC107672489 other upstream 784640 5116866 ~ 5123373 (+)
lrrtm4l1 lrrtm4l1,LOC107730422,LOC107553720,LOC107687748,LOC107720738,LOC107561403 other downstream 143141 6061191 ~ 6089587 (+)
LOC122352486 LOC107720590,LOC107677990,LOC107553711,LOC107705075,LOC107586209 other downstream 536015 6454065 ~ 6472107 (+)
trpc7a trpc7a,LOC107677994,LOC107720592,LOC107552051,LOC105905985,LOC108437819,LOC106603261 other downstream 1063442 6981492 ~ 6993621 (+)
G75422 pcdh1a6,LOC107677970,LOC107552011,LOC107677969,LOC107742394,LOC107720565,LOC107586182,LOC107742396 other downstream 1224243 7142293 ~ 7150581 (+)
LOC122352414 pcdh1a3,zgc:123181,pcdh1a4,LOC107742396,LOC107552012,LOC107586180,LOC107720566,LOC107720564 other downstream 1235536 7153586 ~ 7163223 (+)

Expression


Co-expression Network