gigyf1b (gigyf1,LOC107554307,LOC107586156,LOC107676024,LOC107742356,LOC107678014)


Basic Information

Item Value
gene id gigyf1b
gene name gigyf1,LOC107554307,LOC107586156,LOC107676024,LOC107742356,LOC107678014
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7695316 ~ 7708220 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250314.1
TATGTCTAACAGCcatttttgtaaaacacaaacaacaagaCGACCGAgcgagacagaaaaaaaaactcatcgcGACCGTTGCAGATACAGgggaaaatatataaacaattcaGCATCGAACTCACACAAGACGAGTTTTGAAAACAGAGACGTGCCAGTGGTTCAAACCATCGGTTCCTGCGAAGCACGTACGTGCAAAAGGAGTGAGTTCTTTAAAGAAGATCCAACTCTGGAGAAAACAGTGGATGGCTAGTTTAGCCTAGCTTGGCCAGCAGGCTCGCAGAAGAGGTGGTAGGAGTTGGGAGTTGAATGCTTGCCTGCGAAACAATAACTTTGAATATAAGTAAAAGCGATCAAGAATTAAGAGAAAGGTTACCCAGCAATAGTTACGGCATTACAGACTGCCCTGAGCGTTTTTCAAACAGCAGTTGCTGTTATTTATGCTGCCACAAATTCTTAATCCTAGtgtatgtttttctctttctctctagtGTTTTCAAATtgctgaatcttttttttttttaagatttgaagtTGCTGGCACATTAGGGTGGCGTGCCATATTTTGGAGCTCTTATATCTGGCTAGATATCCATCAGCCGTTATCTCTCTGAAACTGGCAGCTATTATAATATTCATACAGAGTTTAGAATTACCAAGTCCACCTCAGCGCACAGAACCACCGTACCGGTCCTGACAGAACCACCTCATTCCTGTCCCCCTTTCATACTGGTCCTTTACAGTCCTGTTCTTTGGACAAGAAATCCCGAGCCCTCTGGACATACAGAATATGACTGCTGAGACACTTAACTTCGGTCCAGAATGGCTCCGTGCACTATCCAGAGGGGGGAGTGTAACGTCCCCTCCCCCTTCCCCTGCAATGCCAAAGTCCAAGTTGGCCGACTACCGCTATGGCCGCGAGGAGATGTTAGCACTTTATGTCAAAGATAACAAGATCCCTGAGGACATGCAGGATAAGGAGTTCGCTGCTATCCTGCAGGAAGAGCCTCAGCAGCCATTGGCCTTGGTGCCCCTGACTGAGGAGGAGCAGAGAAACTTCTCCATGTCTGTAAACAGTGTGGCTGTGCTAAGGCTTATGGGTAAAGGAGGTGGAGCTGTACCGGCAGGTGTAGCTAGAGGGCGTGGAAGCACTCGAGGGGGTCGAGgGAGAGGCAGAGGAGAGAGCGGATTCTACCAAAGAAGTGTGGATGAAGAGGTCGGTTTTGGCCGAGGCCGAGAGATGCACCGCAGTCAAAGTTGGGATGACAGAGGTGAGCGGCGCTTTGAAAAGCCCTTGAGACGTGATAGTGGACGTGGTGGTTTTGAGGAgggaggagcaggaggaaggAAGGACTATGCACGCTCAGACAGCGAAAACTGGCGTACGCTCagagaggagcaggaggaggatGATGGGACAGAACCTGGGGGAAGCTGGAGGATTGCTGGAGGCCGTCGTGATGAGGGGGGTCCACGTTCAGCAGGTTGGCGGGATCACGTTAGTGGGGATGGTCGGCGTAGGAAGTTTGACTTTGACTTCCGAGATGGTGAAGGTGGACGTAGAAGGGCTGGAAGTgagggaggagaggaagagCGAGATGGCCTGCCTGAGTGGTgcactgatgaagaagaagggGAGATGGGAACCTTTGATTCTTCTGGAGCCTTCATGTGTATTAAGAAAAACTCCAGAGATGCAATCCCTGAAGACCAGGAACTGGAATTTGAAGCTctagaggaggaagaggagggtgGTCAAGAGAAGAATGACAGCCTTGCtgataaatcGGACACATGTGAAGCAATAGCCGTATGTGATGGAGACAGAAAGTCATCATCTCCTCATGCTGTGTCTGCTCCTGCCCCTATGCACCCCGTTTCAGAAGAAGAAATTCCCAAACCCATAGTCACTCCTCCTTCAAAACTTGCACCCCAACCGTCTGAAGATGCAGCTCCAGCAGGTGGCACCACAACGCAGATGCAGAGCTCCTCTCCTCCCTCAACCACTGGTACTGACCTTCCAACAGCAGGGGGAGACACTGAGGAGGAAGATGGCATGAAGCACCTTCAACAGGAGGCTGAGAAGATGGTGGCGTCCCTGCAAGACACGTCCCTTGAAGAGGAATGTTTCACTCAAGCTCTTCAAGAGAGCCACATCACTGcggctcacactcacacacacccaaatgcacacacacactctcactctacttcacacactctctcacactctgcCAGTGCTCTGCCCCTCTCCCATGAATCCGCAATGAAGTGGTTCTACAAAGACCCTCAAGGGGAGATTCAAGGTCCATTCACTACAGTGGAGATGTGTGAGTGGTTTCAGGCAGGGTATTTCACCATGAACCTGCTGGTCAAACGTGGCTGTGATGAGGGATTTCAGCCCCTAGGTGAAGTTATCAAGATGTGGGGGCGTGTGCCTTTCTCTCCCGGACCCTCCCCTCCTCCATTGCTGGGGAACATGGACCAGGAGGTGTTAAAGAAACAATTAGAACAAGCTGCCACTGCAGCCCTATACCAACAACTTCAGATGAGATTTCAGCACATGAACAGGTGTGGGGAGACTGGGATGATGCCTGCGATGAACAGGTCCATGTCAGTGCCAGACACCGGGCCCATGTGGGACATGCCTACCTCAGTCTCTCAGCAGTCAGgCGGTGAGACCAATCTGTGGGACTTAACCATGAGTAACTCCACTCAGGGTCCAACTCTTGAACATTTGCAGAAAATCCAGCAGGAGAGGCGTGAAGCTGAACTCAGGAAGCgtgaagaagaggagaggaagCGGAGGGAGGAAAAGCGCCGACAGCAGGAGGAACagaagaggagagaggaggaggagcttTATAGACGAAAACAGcAGTGCCGTCAACAGCAAGAACTGATCATGAAGTTTCTGCAGCAGAGTCAGCAGCAGCAGAGCGTGCCAGGGGGCGCAGGATGGAGCGGAAGCCAGACAGCTCTGTCTCTGGGCAAAGCTTCCGGAAAGAGCATGGGAATCCTGGAGCTGGAGGCAGAGAGACTTCACAAACAGCAGCAACAGAGAGCTCAGCAGCAGCAAAGGCATGGAGGTTTGACAATGGGCCAGTGGAGTGATGGGCCATCTGGGATGTGGTCAGGAGCTGGCATGGAAGGCAAGGTCGGAGGTGGCAACCCTGCTATGGGCATGTGGGATGAGGCCATGAAGAACCAGTCCAGCCATCGCAACATTGGCCTGAAGAACAGCCGCAGCAGTCCCTCTCTCAGtgaTCAGTACTTGCTGAATCGGCGTAAGCGTACTGACGATGAGGAGAGGCTTCTGAAGCTTCTTCAGGGGATGAAACCTCAGGACGGTTTCACCACTTGGTGTGAACAGATGCTCCATGCTCTCAACACCTCTGCAAATAACTCCTCCTCAGTGGATGTGCCCACCATTGTGGCATATCTGAAGGAGGTGGAGTCTCCATATGAAGTTCATGACTTTATCCGTATTTATCTGGGCGATACCATTGAAGCCAAAGAGTTTGCCAAGCAGTTCCTGGAGCGCCGTGCCAAACAGAAAGCGAACCACCAGAGACAACAGCAGCAGCTGTCCAAGGAAGTCTCTGGATTGAACATGAACTTCCCCCTGCAGTCAATGTTCCAGGCAGCTCACATGAGTAAGGGCGGCAGTGTGTACGACACTCAGGGAGGAAAAGCGAAGAAAAAGCCTAGCATGATGCTCCATTCTGACCCCAGTATCCTCGGCTACTCATTCCTGGGGGGAGGTGAGCTGGAGCAGGTGGAGGATTACTGACCCAGCCCGTCTACTTGAGTTTACCTGAGGCCTTAAACCTGGAGCAAATCAGCAGAGGAATGTGCACTGCTCAGTGAGGGAAGGGAAGGGCAATATTTGTCCAcaccccctctctctttctccctctttctctcactctgcACTGTGAGAGGAGCAGAAGGAGGTTATTGGGAGGTTCGGTGTGAAGAGGAGATCCTCTTCTGCCTCCCTTCAGTAAAGCACCTTACCTAAACCATTGCActttaatgttttcatatttgaaatggagttgtctttctttttttttacaatgcaaaaatgtgtgaATATATTGTTGCATATATTATGTGTAGAATATTTGTATGAATTACATACGAGAGGTAGGAACGGAGCGGTTTCAGTCGTATCAAACGTGGATGTTGAGAAACGTTGGGGAGATGTAAGTTGAGCATCTctcctaaaacacaaacactgttgtatttttatgttcatggtaaagctataaaaaaatatgaatttgaaaACTTGAAGATTTGCacttgtttaacaaaaaaaaacgacaaaaaaaagttagggtaggttgaggttttttttgtgagaGCGTGTGTAAGCGTAAGAGAGATGAAGTCTGCACAAATTTTATTGCTTATCGACGTGTATAAAACAAAtgccatgcttttattttgttcaacaCAATTTTGTACTTCATTGAGCGTGTGTGCGTGAATGGACAGAAGTAGTTTGTGTTGCcgcttttttttgtacataggCTCTTAAAGAGACCGATAGGACAGTCAAGCATTGCGTTTTTACCCTCCAGTGTTTCAAAGCATGACTGAGGTGCTGTTTGGCCCGTTTGGCTCTGTTCTAAGAGGGCAATCGGGGTTTGTCTATGGTGTATAAATGTAGCTCCTCTGTTGTCTGTACACAAGCTACTTGCATTACAACTATTCCCCTTTCGCTCATTCTCAGTCCACGATGTGAAATGTTGCCTTCTGTCCAGAAAGTGTGTctgcgtgcatgtgtgtatggATTCAGTTGGCTGGTATTTTGAGACAGTCACAAGGGCACTGTGATTCTGTATGTCAGTtgttacttttcttttctttttttttgttgctgtttaaaaaggatgaatgatttatttttttattgttctataCAAAGTATTTGAACTTTGAGTTGGAGCACTTTCTAGGCTGCTaccttgtattttttttgaataatgttttttatttgttaggggttttttttctttttaatttttatttgcctCTTGAGGATGTTGTATTATGAATGAATGTATTCCAAAACTATGTATAACAGTGCATCTAACAACAAGGCTTGAGTGTCTCTGAGTGAGACGGGATACGCCTCACCATTCGGAATATGCCTATTGTCAGAGGTCAGATTCTGAGATGCGCTTGGCCTGTATCAAGCCGACGGTCTCCGGCTGCTAGTGCTCTTCCAGAACTTTCTCACAGCACCCGGAGATTCTGTTCGTCTCCCAACATCTTGATGGAACTGTTGTTCTGCCGTCCTGTTACTTATGGTCTTGATACCAGGCCATTGAGAGCCAAGGATCTGCAGTGTGTagcagtaatttttttttttttttggaaagacaGAATCTATTTTTCCCCCCAATCCATGAGTTTTGGGATTGAAATATGTGATGTTTTGCATCATAAATGTTTATTCACCTGAGTCCTCTGAATAGGAAGAGACTGAGGATCGGAACAGAGGAGATTTCGGTACTTGATctgtagaaaagaaaaaaaaaatcctgctttAAGCGTATTTCACTCTATTCTGACtggattatatttttgtaaaaaaaaaaaaaaaaaatgaaataacaaaagaCAATGACTGAAAACAAGCACGGAGAGGTGGATATCAGCACTAACTCAAACGCCATCCTGGAGTCCGGAAAGGGGTGGCAACCAGCTGCATTTTAGTGCTACACACAGAGAGTAAGACGGAGGGAATACATGCGGATCCATTTCATCCTTACACCAAAGGGATGGAGTTTTCTGCGTCCTTTGAGCTGCAATCCCTGCTTCTCTCTGCAACACTATCAAATGAAGGATATTCCTacagcatttgaaaaaaaaaaaaaaaaaagtggtcatattgaatgtttgatttaaaaaaaaaagaagaaaaaaacaacaaaaaaaaaacctttatgcCTTTTTAGAAGATTTACTGTGTGGAGAAACCGCAGATTCTCACGTCTATCAATCATATTTCTTCAAAAACTTCCTTACCTGCTGTGGGTTGAGGAGCCTAGATGTGATGAATGTTTGGAGAGGAGATGAACTGAAGCAATCTCTTCTTGTTTCTTCACGCACTTCACTTGAACTAAATCTCAAGGACACAGACTTGTCATGATTGTCTGTCAATACAATGAAAACTAGAGAGTATTACAGCAATTGTTGGTTTTATGAAGTTCATGGGATGCTTGTGAAACAACTAAACTGCAGTGAAGCAGttcttCCAGGACGGACATAACCTAGATCTCCCTGCTGGGACCATCACAACAACCAGTATGCATCTTCTGATGTTTCGAACTGGATTAAGCAAGAGACCACAACTCTTTCTCTACTGTATCTCTCTTTCGTCCTGACAGCATAGAATGGGACCCACAGGCGGACTaggtgtgtgcatgcgtgtgaaGAGACTTTGTATGTGTCTTTACAAAGACACTCGTACATTCTCCCGTCTCGATTGTGGGTGAGGTGGGGACTGGATGtcctgtaaataatgtaaatgattttggTCCCTGTTTGTTGAGTTCTGTCCATCTTAGGCCATCATTTTGGGTGTTTGACATGCCTTAATTGTACAAAATAGAACTGCCCTGGTCAACATTAATGTAACACTCTTTAGAAAAACAGCACAGGCTATATCTACACCACTCAGTCATCTAAAGGAATCTGAGCCTGGCTGAGGATGTTTCCCCCCTTCATTGACTTCACTCATCATACCAGGCTGTGGGATGTTTCCCACAGTGTTTTGTGTATTGTTGGTATGTTAACGTTCAAGTGAATAGCGGCAATTATTGACATGTACAGATAAAGGTTGATGAACTTTGGTATATGctgaaatctgaaaaagaaatagtaaaagtaaaaaaaaaaaaaaaaacaaaaagaggtAGTTTGCCTCTCAGCTCGacgttaaatttttttttttttttaaatgattaggTGGGTACAGAACATGGGGCTTAGTTTTGCTTTGAAGATCAAAATatgttaaactgaaaataataaaaaataaataaatgctga

Function

symbol description
gigyf1 Predicted to be involved in insulin-like growth factor receptor signaling pathway. Part of protein-containing complex.

NR:

description
GRB10-interacting GYF protein 1-like isoform X2

GO: NA

KEGG:

id description
K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250314.1 True 7071 mRNA 0.46 26 7695316 7708220

Neighbor

gene id symbol gene type direction distance location
nlgn2b nlgn2b,LOC107554306,LOC107678031,LOC107720555,LOC107675989,LOC108443341 coding upstream 13572 7615404 ~ 7681744 (+)
LOC122352927 NA coding upstream 157045 7533188 ~ 7538271 (+)
npm1a LOC107678029,LOC107720694,LOC107552000 coding upstream 207960 7484402 ~ 7487356 (+)
kcnip1b kcnip1b,LOC107720696,LOC107552061,LOC107742366,LOC107586147,LOC108444575,LOC103024145,LOC102788752,LOC101476742,LOC107676032 coding upstream 211863 7450917 ~ 7483453 (+)
hrh2b hrh2b,LOC107678001,LOC107552049,LOC107720559,LOC107742384 coding upstream 308322 7381076 ~ 7386994 (+)
efnb3a efnb3a,LOC107742355,LOC107720690,LOC107678015,LOC107586157,LOC107676033,LOC107554296 coding downstream 953 7709173 ~ 7747396 (+)
kdm6bb LOC107676007,LOC107742353,LOC107720684,LOC107586158,LOC107554308,LOC107678007 coding downstream 73968 7782188 ~ 7810083 (+)
tmem88a tmem88a,LOC107554311,LOC107720688,LOC107742406,LOC107586221,LOC107676001 coding downstream 103986 7812206 ~ 7817701 (+)
LOC122353466 NA coding downstream 155559 7863779 ~ 7863912 (+)
ap4m1 ap4m1,LOC107554303,LOC107702797,LOC107742404,LOC107720677,LOC107586161,LOC107675998 coding downstream 158115 7866335 ~ 7871448 (+)
G75574 NA non-coding upstream 12876 7682154 ~ 7682440 (+)
G75502 NA non-coding upstream 206749 7487475 ~ 7488567 (+)
G75516 NA non-coding upstream 287195 7402133 ~ 7408121 (+)
G75514 NA non-coding upstream 295283 7399428 ~ 7400033 (+)
G75513 NA non-coding upstream 295953 7398045 ~ 7399363 (+)
G75583 NA non-coding downstream 98141 7806361 ~ 7834899 (+)
G75591 LOC107720685,LOC107586160,LOC107676011 non-coding downstream 132378 7840598 ~ 7859712 (+)
G75593 LOC107678008 non-coding downstream 136999 7845219 ~ 7849236 (+)
G75607 NA non-coding downstream 193003 7901223 ~ 7902731 (+)
G75629 NA non-coding downstream 327914 8036134 ~ 8069911 (+)
G75496 LOC107720595,LOC107677995 other upstream 329985 7360984 ~ 7365331 (+)
LOC122353118 pcdh1g1,pcdh1g2,pcdh1g3,pcdh1gb2,pcdh1g9,pcdh1g11,pcdh1gb9,pcdh1g18,pcdh1g33,pcdh1gc5,pcdh1g32,LOC107677968,LOC107742392,LOC107688304,LOC107720705,LOC107552007,LOC107677966,LOC107586189,LOC107742391,LOC107688284,LOC107688294,LOC107586188,LOC107720703,LOC107677965,LOC107586192,LOC107742390,LOC107586191,LOC107552005,LOC107720701,LOC107688268,LOC108191536,LOC107552066,LOC107586138,LOC107687322,LOC107677986,LOC107677985,LOC103911742,LOC107677983,LOC107742370 other upstream 355121 7197537 ~ 7340195 (+)
LOC122352414 pcdh1a3,zgc:123181,pcdh1a4,LOC107742396,LOC107552012,LOC107586180,LOC107720566,LOC107720564 other upstream 532093 7153586 ~ 7163223 (+)
G75422 pcdh1a6,LOC107677970,LOC107552011,LOC107677969,LOC107742394,LOC107720565,LOC107586182,LOC107742396 other upstream 544735 7142293 ~ 7150581 (+)
trpc7a trpc7a,LOC107677994,LOC107720592,LOC107552051,LOC105905985,LOC108437819,LOC106603261 other upstream 701695 6981492 ~ 6993621 (+)
si:ch211-237l4.6 NA other downstream 109590 7817810 ~ 7822518 (+)
LOC122353465 NA other downstream 153026 7861246 ~ 7861379 (+)
trnas-gcu_13 NA other downstream 153373 7861593 ~ 7861674 (+)
trnat-agu_2 NA other downstream 153740 7861960 ~ 7862033 (+)
arrb2a arrb2a,arrb2,LOC107742343,LOC107586162,LOC107676026 other downstream 164319 7872539 ~ 7880100 (+)

Expression


Co-expression Network