nfil3 (LOC107702584,LOC107558263,LOC107715881,LOC107720386,LOC107560408)


Basic Information

Item Value
gene id nfil3
gene name LOC107702584,LOC107558263,LOC107715881,LOC107720386,LOC107560408
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 3768754 ~ 3772710 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250337.1
CAGCAGTCACTCCGACAGGAAAACGCATAGGAGAAACACAAGTATTATTTCCAGATGGGATTTTATTACTGTTGATGAAACACCTCCGGCcgctttgaatgtttttatatgcattatttatccCGGACATCCACCTCTTTGGACCTTTGCTTGTAAgagATCCATTACAAAATTCTCTGGAACTGACTTCACAAAAGAGGACACATGACTGCTATAGCGCTCGGTCTACGATGAGATGTCTACTTAAAACCAGAGTCAACTAATGAGCTTATGCAGTCTTGATGACCACATTGTGTAATATGCAAGCCATTAAGAAGGAGCCCCCATGCACTGGGCCCTACGGTGGAGAGGATGCCTTGGTGCTGGCAGTGGCTTTACAAGGGACAGACAGGGACCTGATTAACCACAAGCTGTCCACCGTGCCCTATAAGAACAAGTCCTCCACCTGTCGCAGAAAGCGCGAGTTCATACCGGACGAGAAGAAAGACAGCCTATATTGGGAAAGGAGACGCAAGAACAACGAAGCAGCCAAACGTTCACGAGAAAAGCGCAGACTCAACGATATGGTTCTGGAGAACAAGCTCATGGCCCTCGGGGAAGAGAACGCATCGCTGAAAGCCGAGCTTCTGTCGCTTAAACTCAGGTTTGGCTTAGTGAGCTCAGCAGCTTACGCTCAGGAGGTGCAGAAAATTTCCAGTGCCACTGCTGCACTCTATCAGGACCTTATCCCACCCAGTGCCGCCAAGGGTTCCTACCCAAGTGAGCTCGAGCCAGCGCGTTTAACCAGCAGCCACATATCAGTCATCAAGCACTCACCTCACAGCGCCTTGTCCGACGGATCTGACTCAAGTATGGTCACCCAGGGGAGCCCGCTTATAAATATATCCCGAACCCCTGACAGCATCAAACAAGAACCCCTGGAAACCGGCAGATACGCCAAAGACAGGGCAAGTCCATATGAACTCTACAGGAACTACCTTAGTAGCCCTTTCCCTGGGAGCTACTCCCAGCCATCGCCGTTCTTGCAAATCGCCAGATCGTCGAGCAATTCGCCACGAACATCTGACGGTGATGACGGGGCCGTAAGCAAGTCTTCAGATGGAGAGGATGAACAGCAGGTCCCAAAGGGTCCGGTTCCACCCAGGGCCGATTCACAGAGTGTGATTGTTTCGAACCTCAAAGTGCCAGATGCCAGTGCCTCAGCTTTGCCCCACAAGTTGAGGATCAAAGCCCGGGCCATCCAGATCAAAGTGGAGGCTATTGATCCTGACTATGAATCGTCTGGCAAGTCCTCCTTTCCCATCGACATGTCTGCAAGCAGATGCTACCAAATGAGTCAGTACGTTTCACCCGAGTACATTCAGTCATCTTTGAGCCCGACGTCCTTCCAGATGACCGATGTTCAGGACTGGAGTCAGCAGCCGAAGGAATGGCACAAAGATCACAAGGAGGAACCAACTAACTGCAAACACCGGCAATGTCCAGACTCACCGAGACCTATGCCTAACAAACTCATCGCCGACCTTAAAAACGACTCGTACGCCCAGTCTGAATCGGAGAACTTGTACTTGAAACGGGGCATTGCTGATCTGTCAGCAGAAGTGGCCTCCTTGAAAAGACTAATTACTAAACAGCAAGGGTCTGTTATCGAGTCCACAAAAAGCACTACTGAAATTGACTCATTATGAAAAGGATGTTTCTGAAACTAAGTTCCCTCTATTTGCACAACGCCTGTTTTCCACTGTGTTCGCTACTGCACTGTGCGGTTGTTATGGTGTCAAAGAGCTGCACTTCATTGAGAAGAATGGTGTTTTGTGCACTTACTGTTGTAGTTTGGCGTGTCTTCTTGATGACTCCATTTGTAGCCCAAAAATTGGGCTACTGTTAATGTTAActtctgaaaatgtattgtACATTGTATGTTCTCTTTTGTTTACAATAAATGCAAGCACTGAAATA

Function

NR:

description
nuclear factor interleukin-3-regulated protein

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0061515 myeloid cell development biological_process
GO:0007623 circadian rhythm biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09059 NFIL3, E4BP4; nuclear factor, interleukin 3 regulated

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250337.1 True 1959 mRNA 0.48 2 3768754 3772710

Neighbor

gene id symbol gene type direction distance location
ror2 ror2,LOC107702585,LOC107683466 coding upstream 1081 3709666 ~ 3767673 (+)
sptlc1 sptlc1,LOC107715883,LOC107720388,LOC107702586,LOC107683465,LOC107560407 coding upstream 60440 3697541 ~ 3708314 (+)
carm1l LOC107702592,LOC107715849,LOC107679043,LOC107573847 coding upstream 127893 3627167 ~ 3640861 (+)
LOC122352579 LOC107702598,LOC107715893,LOC107653494,LOC107732273 coding upstream 200257 3496746 ~ 3568497 (+)
LOC122352557 plppr1,LOC107750956,LOC107653496,LOC107702599,LOC107710008,LOC102776600 coding upstream 312967 3413925 ~ 3455787 (+)
auh auh,LOC107720385 coding downstream 800 3773510 ~ 3790180 (+)
ankrd55 ankrd55,LOC107702571,LOC107670032,LOC107737049 coding downstream 35304 3808014 ~ 3818485 (+)
il6st LOC107715880 coding downstream 48627 3821337 ~ 3834370 (+)
st8sia4 st8sia4,LOC107702581,LOC107670050,LOC107558264,LOC107560405 coding downstream 110549 3883259 ~ 3891247 (+)
syk syk,LOC107715877,LOC107736968 coding downstream 139555 3912265 ~ 3935837 (+)
G74585 NA non-coding upstream 102 3768201 ~ 3768652 (+)
LOC122353153 NA non-coding upstream 180860 3587363 ~ 3587894 (+)
G74392 NA non-coding upstream 987437 2780642 ~ 2781317 (+)
G74389 NA non-coding upstream 1051997 2716522 ~ 2716757 (+)
G74388 NA non-coding upstream 1052462 2715379 ~ 2716292 (+)
G74589 NA non-coding downstream 16047 3788757 ~ 3844512 (+)
G74596 LOC107715844 non-coding downstream 81606 3854316 ~ 3858952 (+)
G74626 NA non-coding downstream 119181 3891891 ~ 3893020 (+)
G74667 NA non-coding downstream 348154 4120864 ~ 4122658 (+)
G74680 NA non-coding downstream 378748 4151458 ~ 4153279 (+)
cdc42se2 cdc42se2 other upstream 74158 3669003 ~ 3694596 (+)
zgc:113274 LOC107715885,LOC107702590,LOC107720383,LOC107560406 other upstream 100748 3663912 ~ 3668006 (+)
enoph1 enoph1,LOC107702573,LOC107715850,LOC107679042,LOC107731803 other upstream 151238 3588244 ~ 3617516 (+)
LOC122352388 tln1,LOC107715875,LOC107670039,LOC107568645,LOC107702558,LOC107737170 other downstream 240324 4013034 ~ 4120447 (+)
LOC122352783 tln1,LOC107715875,LOC107670039,LOC107568645,LOC107702558 other downstream 708557 4481267 ~ 4529002 (+)
LOC122352404 LOC107670527,LOC107567246,LOC107587997,LOC107757377,LOC107711240,LOC107672489 other downstream 1344156 5116866 ~ 5123373 (+)
LOC122352567 ywhah,LOC107562560,LOC107744159,LOC107713377,LOC107555530,LOC107688000 other downstream 1465569 5238279 ~ 5250137 (+)
G74965 NA other downstream 1484128 5256838 ~ 5258823 (+)

Expression


Co-expression Network