LOC122352762 (hist2h2l,zgc:194989,LOC107719244,LOC108277172,LOC107667924,LOC103356012,LOC107574861)


Basic Information

Item Value
gene id LOC122352762
gene name hist2h2l,zgc:194989,LOC107719244,LOC108277172,LOC107667924,LOC103356012,LOC107574861
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 11747207 ~ 11748057 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250357.1
CGCAGAGCGTTCGCATACCATAACGATCCTTTGACAGCTGAGCTTTTGTGAAACACCGACACAATGCCTGAACCTGCGAAATCAGCACCAGCTCCTAAAAAGGGGTCTAAAAAAGCTGTCACCAAGACCCAGAAGAAGGGGGATAAGAAAAGGCGTAAGACCAGGAAAGAGAGTTACGCCATTTACGTGTACAAAGTACTGAAACAAGTCCACCCGGACACTGGTATTTCCTCAAAGGCGATGGGTATTATGAACTCGTTTGTAAACGACATCTTCGAGCGCATCGCCGGAGAAGCGTCGCGCCTGGCGCATTACAACAAGCGCTCCACTATCACATCCCGGGAGATCCAGACGGCCGTGCGCCTGCTCCTGCCGGGAGAGCTGGCCAAACACGCCGTGTCCGAGGGCACAAAGGCCGTGACCAAATACACCAGCTCCAAGTGAAAGTGAACAAACAAGATGGACTGGACTCTATCCCTAATGATGGAAGACGAAAACCACCCACTGTTGTTTGATATCCGCATGAGGGACCTCTGGTACATCTTGAGCGAAAGCAGCTCTGGAGGAGCACAAACACAGTGCTTTCCATCTGTAACACCAACATTCACCTGAGGCTGTTCCTGTTTGATCGTATTTGCACGTGTGAACACTCGTACTGTACTATTATGGCATATGGTCGTCATTCGTTAACTCATGTTACCAGAGGAAAACACTGTGGCTTTGGTTTTCATTGATATCTTAAATTTGATGTACTGtattcataatgaaaaaaatgtcttatgcCTGAATGTTTCTTCATAACTACCGTGTCATTtaccacaaataaatacatagtttAATGGTAACTGCAA

Function

symbol description
hist2h2l Predicted to enable DNA binding activity. Predicted to be involved in nucleosome assembly. Located in chromatin. Is expressed in gill; heart; muscle; pleuroperitoneal region; and proliferative region. Orthologous to several human genes including H2BC21 (H2B clustered histone 21).
zgc:194989 Predicted to enable DNA binding activity and protein heterodimerization activity. Predicted to be located in chromosome and nucleus. Predicted to be part of nucleosome. Orthologous to several human genes including H2BC21 (H2B clustered histone 21).

NR:

description
PREDICTED: histone H2B 1/2

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11252 H2B; histone H2B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250357.1 True 851 mRNA 0.47 1 11747207 11748057

Neighbor

gene id symbol gene type direction distance location
si:ch73-261i21.5 LOC107588542,LOC107693981,LOC107747005,LOC107578992,LOC107691696,LOC107751407 coding downstream 2649 11731123 ~ 11744558 (-)
vps11 vps11,LOC107744603,LOC107691631,LOC107588528,LOC107693978,LOC107747034 coding downstream 27562 11713900 ~ 11719645 (-)
ift46 NA coding downstream 35609 11709431 ~ 11711598 (-)
tmem126a LOC107747013,LOC107744609,LOC107693976,LOC107691630 coding downstream 214202 11530837 ~ 11533005 (-)
zpld1a LOC107548885,LOC107693966,LOC107747018,LOC107744615,LOC107576843,LOC107699252 coding downstream 280369 11458833 ~ 11466838 (-)
zpr1 zpr1,LOC107693980,LOC107747003,LOC107751399 coding upstream 1908 11749965 ~ 11754201 (-)
bsx bsx,LOC107747047,LOC107589660,LOC107751411,LOC107579003 coding upstream 33439 11781496 ~ 11784153 (-)
lim2.1 lim2.1,LOC107579014,LOC107589671,LOC105028969,LOC105900331 coding upstream 38353 11786410 ~ 11787673 (-)
opcml opcml,LOC107746995,LOC107588660,LOC107686109,LOC107691701,LOC107751394,LOC107577150 coding upstream 317874 12065931 ~ 12186096 (-)
LOC122352422 pknox2,LOC107686111,LOC107691639,LOC107747045,LOC107686209,LOC107751409 coding upstream 469033 12217090 ~ 12283587 (-)
G76693 NA non-coding downstream 260779 11485906 ~ 11486428 (-)
G76657 NA non-coding downstream 456367 11218169 ~ 11290840 (-)
G76662 cblb,LOC107548831,LOC107699267,LOC107576804,LOC107693962,LOC107747038 non-coding downstream 511517 11234372 ~ 11235690 (-)
G76642 NA non-coding downstream 636372 11096963 ~ 11110835 (-)
G76627 NA non-coding downstream 656146 11087586 ~ 11091061 (-)
LOC122353234 NA non-coding upstream 700485 12448542 ~ 12453651 (-)
G76902 LOC107746985,LOC107751382 non-coding upstream 857162 12605219 ~ 12610098 (-)
G76912 NA non-coding upstream 930310 12678367 ~ 12678625 (-)
G77135 ppm1e,LOC107728886,LOC107686131,LOC107588822,LOC107734442,LOC107691656,LOC107577402 non-coding upstream 1048607 12796664 ~ 12880735 (-)
G77153 NA non-coding upstream 1273596 13021653 ~ 13103059 (-)
ccdc83 NA other downstream 162247 11505310 ~ 11584960 (-)
LOC122352715 LOC107693960,LOC107747020,LOC107744618,LOC107699265 other downstream 539955 11176569 ~ 11207252 (-)
G76625 NA other downstream 708476 11017110 ~ 11038731 (-)
rps6kb1a rps6kb1a,LOC107747022,LOC107548877,LOC107744622,LOC107699259,LOC107693887 other downstream 763469 10972881 ~ 10983738 (-)
G76498 NA other downstream 1267018 10478059 ~ 10480189 (-)
uvrag uvrag,LOC107691651,LOC107577365,LOC107686127,LOC107751378,LOC107589407 other upstream 930933 12678990 ~ 12769417 (-)
mogat2 mogat2,LOC107751377,LOC107691703,LOC107747029,LOC107686211,LOC107589716,LOC107579037 other upstream 1034296 12782353 ~ 12789095 (-)
dclk1a dclk1a,dclk1,LOC107588999,LOC107728871,LOC107577778 other upstream 1744216 13492273 ~ 13533064 (-)
sparta spg20,LOC107728829,LOC107589828,LOC107577790,LOC107697408 other upstream 1790099 13538156 ~ 13543615 (-)
ypel2a LOC106603438,LOC106931471,LOC106940241,LOC101067200,LOC107659943 other upstream 1895127 13643184 ~ 13654413 (-)

Expression


Co-expression Network