chd1 (chd1,LOC107665465,LOC107670034)


Basic Information

Item Value
gene id chd1
gene name chd1,LOC107665465,LOC107670034
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 4131742 ~ 4153288 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250373.1
GTTTCGCTCTCTCTGTGTGCGCGAGCGCGTCATGGCGGAGACCGGCTGGTGTAGGATTTACAGCTGAAATATGCCTGCTATCCCATCTGTTTCCCGGCACATGGAATACAAAACACTGCCTAGCGTCTAAACCCAAGGCACTTTCGACCGTGGAGGGGTAAACTTGGAAACCCATCTGTCAGAATAAAGTCTAAGTGTGTTTTCGTGGAGTTCCCGAGCGACAGCGGCTATCAGCAGAAAGAACCcaaagcggcgcagggcagaCAGgtgaGCTGCTCTGAAGTGGCGCGCACAGACTGCAAGGATCTCATCAGGGACTaatctttaatatttgattGCGATGGATGGACGCAGTGAGGATGAAAGTGTCAGCAACAGCAGCGGAGAGTCCAGTAATTCAGATGATGAGTCTGGGTCAGGATCGGGTTCGGGCTCGGGCTCGAGTTCAAGCAGTAGCAGTTCtagcagtagccaatcagggaGCAGTGACTCAGGAAGTGGCTCGGATTCTGGAAGCCAATCAGACTCTGACTCTGAGAAATCCAAGGAAAAGAATGATCAAGACAATAAAATCGATGGAGCAACGTTTTGGAAGTCCAATCCCAGTATCCTGACAGTGCAAAGGTCAGCCATGATCAGGAAACAACAGCTTCAACAGCAGCAGCTCCAGCAGCAGAGCTCCTCAAACACTGGTTCAGACGAGGACTCTTCCAGTAGTGATGAGTCAGACGATGACTCAAAGAGCAGGAGTAAAGGGTCTGGTTCTGACTCTGACTCGGGCTCTGGTTCAGGAAGTGGCTCATCTGACTCTTCagcagaggaggaagagaacaGTGACGAGTCAGTGTCAGACTATGAGCCCAGTCACAAAGTCAAGAGCAGAAAACCTTCAAACAAGGCTAATGCCAGGAATGGGAAAAATAACAAAGCTCCCAAGAAGAAGCCCTCCCGCTCCTCCTCAGATGAAGAGGATGATTATAAAAAAGCTCTAGCGGGACCTCGGCGGCAGGCCACTGTCAATGTGAGCTACAAAGAAGATGAGGAACTGAAGACTGACTCGGATGACCTGGTGGAGGTATGCGGAGAGGATGTCCCACCCCCGGAGGAGGATGAATTTGAGACACTGGAGAGAGTTATGGAAATGAGGATAGGCCGGAAAGGAGCAACTGGGGCCGTAACCACGGTGTATGCAGTAGAGGCAGATGGAGACCCCAACACCAACTTTGACCCCAACAGACAGCCAGGAGAGGTGCAATACTTGATCAAATGGAAGAATTGGTCACACATTCACAACACCTGGGAGACAGAGGAAACACTTAAACAACAGAACGTGAAGGGCATGAAGAAACTGGACAATTTCAAGAAAAAAGAGcaggagaaaaagaaatgGCTCAAATCTGCCTCGCCTGAGGATGTGGAGTACTTCAACTGTCAGCAGGAACTCATGGATGACTTGCATTCACAATATCAGCTTGTGGAAAGAATCATCGGACATTCAAATCAGAAGTCTGCCGCAGGTTATCCAGATTACCTTTGTAAATGGCAGGGGCTGCCATACTCGGAGTGCAGCTGGGAAGACGGTGGTCTTATTGCCAGAAAGTTTCAGAAGTGCATTGACGAATACATGAGTCGCAATCAGTGCAAAACCATTCCCTCAAGAGACTGCAAGgttttaaaacagAGGCCACGGTTTGTACCCATGAAGAAGCAGCCTCACTACATTGGTGCAGATGGATTGGAGCTGCGAGATTACCAGTTGGAGGGTCTGAACTGGATGGCCCATTCTTGGTGCAAAGGAAACAGTTGCATCCTGGCGGATGAGATGGGTCTGGGCAAAACCATTCAGACTATCAGCTTCCTCAATTACTTGTTCCATGAGCACCAGCTTTATGGGCCGTTCCTTCTGGTGGTGCCTTTGTCAACCCTTACATCCTGGCAAAGGGAGATACAGCTCTGGGCTCCACTGATGAATGTTGTGGTCTACCTGGGAGACATCAACAGCAGAAACAtgATCCGGACACATGAATGGATGCATCCACAGACCAAAAGGCTGAAGCTCAACGTTCTGCTTACTACATATGAAATTCTGCTTAAGGATAAGTCCTTTTTAGGAAATGTGAACTGGGCATTCATTGGCGTAGACGAGGCCCATCGGCTGAAGAATGACGACTCGCTCCTCTACAAGACTATGATCGAGTTCAAGTCCAACCACAGGCTCTTGATCACAGGCACACCCCTCCAGAACTCACTCAAAGAGCTCTGGTCTCTACTACACTTTATTATGCCTGAAAAATTTCACTCATGGGAGATATTTGAAGAGGAACATGGCAAAGGCAGGGACTCTGGTTATACCAGCCTTCATAAGGAGCTGGAGCCCTTCCTGCTGCGCAGAGTAAAGAAGGATGTGGAGAAGTCTCTACCTGCCAAGGTGGAGCAGATCCTCAGGGTGGAGATGAGCGCTGTTCAGAAACAGTACTACAAgtGGATCTTGACGAGAAACTATAAAGCCCTGAGTAAAGGCACTAAAGGAAGCAAGTCAGGCTTCCTCAACATCATGATGGAGTTGAAGAAATGCTGTAACCACTGCTACCTCATTAAATCACCTGAGGATAACGAGTTCTACAACAGACAAGAAGGCCTACAGCATCTTATACGCAGCAGTGGGAAGCTGATTCTTCTGGATAAACTGCTGGTTCGGCTGAAGGAACGAGGGCACCGTGTGCTCATCTTTTCTCAGATGGTTCGAATGCTGGACATTCTAGCAGAGTACCTGAAGTACCGGCAGTTCTTATTCCAGAGACTGGATGGCTCCATAAAGGGTGAGATGAGGAAGCAGGCATTAGATCATTTCAATGCAGAGGGCTCTGAGGATTTCTGCTTCCTGTTGTCCACGCGAGCAGGTGGTCTGGGCATTAACCTGGCTTCTGCAGATACAGTGGTCATTTTTGACTCTGACTGGAACCCTCAAAATGACCTGCAGGCCCAAGCCAGAGCGCACAGGATTGGTCAGAAAAAACAGGTGAATATATACCGTCTGGTGACGAAGGGCTCGGTAGAGGAGGATATTATAGAGAGAGCCAAGAAGAAAATGGTGTTGGACCACCTAGTTATTCAGAGAATGGACACCACGGGAAAAACTGTCCTTCACACGGGTGCTGCTCCTTCAAGtTCCACTCCATTCAACAAGGAGGAACTGTCAGCCATCCTGAAGTTTGGTGCTGAGGAACTTTTCAAAGAGCCGGAGGGAGAGGAGCAGGAACCTCAGGAGATGGACATTGATGAAATCCTGAAGCGAGCAGAAACCAGAGAAAATGACCCTGGACCATCAACTGTAGGAGAGGAGCTTCTGTCACAGTTTAAGGTAGCAAATTTCTCCATGATGGAGGATGAGGAGATTGACATGGACACAGAGAGGGATGGTAGGAACTGGGATGACATTATCCCAGAGGAGCAGCGGAGGAGACTCGAGGAAGAGGAGCGACAAAAAGAGCTAGCAGAGATCTATTTACTGCCCCGCATGAGGAAGTGTGCTAAACAGATAAACTTTAATGGAAATGAGGGCAGGCGCAGCCGGAACAGACGATACTCTGGTTCAGACAGCGATTCTGTCTCCGACAGAAAGAGGCCCAAGAAACGAGGAAGACCTCGAACTATTCCAAGAGAGAACATTAAGGGTTTCACTGATGCAGAGATACGCAGgtttattaaaagttataaaaagtTCGGTGGCCCTTTAGAAAGGCTTGACGCTATCGCTCGCGATGCTGAGCTGGTGGACAAATCAGAGCATGACCTGCGACGACTGGCTGAGACTGTACACAATGGCTGTTTGAAAACGCTAAGGGAGAACCCCTGTGGACCCGAACGAACCTCAGGAGGCAGGCGAGGGAAGGTGAAGGGACCCACCTTCAGGATCTCAGGGGTTCAGGTCAATGCTAAGCTAGTGATCTCTCATGAGGAGGAGCTGGCACCATTACACAAGGCCATTCCCGCTGACCCTGAGGAGAGGAAAAGgTATATAATCCCATGCCACTCAAAGGCAGCTCATTTTGACATTGAGTGGGGTAAAGAGGATGACTCCAGCCTGCTTATTGGAATTTATGAGTACGGTTATGGCAGCTGGGAGATGATCAAAATGGATCCAGACCTAAATCTCACACACAAGCTCCTTCCAGATGACCCTGACAAGAAGCCACAGGCCAAGCAGTTGCAGACACGAGCTGACTACCTCATCAAATTACTGAGCAAAGACCTTGCTAAGAAGGAAGCACAGAAACAGGCCGGCACAGCAAATTCACGCAAGAGAAAACCACGAGGCAAGAAGAACAAAGCTGTAAAAACCAAGATGGATGACGTGACAAACAGTCTGTCCTCTGCACCACCATCAGATAAGAGCTCTGAAGAAGAGGATGAgaaggaggaagaagaaaagGAAACTCCTCCAGCTAAGCCAGCCAACAGAAGAGCACGTGTATCAGAGCGGCCGgtaaaggaggaggaggacgaagatgaggatgaagagTCTGATGAGGACGAGCTTGAGGACAAAGAGCCCGAAGAGAAGGACATAATGGAGAAAGTGGTCAAAAAAGAAATCaagaaggagaagaaagagGAGGGTCGGGACAGCAAAGAGAGGGAACCAAAAGAGGAGATGAAGTCAGAGCCTGAAGAAGAGACCCCTGCAGAGAAGGCTGTAGAGGTGAAAGCAGAAGTACGGGAGAAGAAAGCTGATACCCCTGTGCACACGCCCTCGGGAGGAGATGCGATTCCCTTGTCTGAGGAGTCTGAAGAACTGGACCAAAAAACCTTCagtgtgTGTAAGGAGCGCATGCGGCCAGTGAAGGCAGCACTCAAGCAGCTGGATCGTCCAGAGAAGGGTCTGTCTGAACGTGAACAGCTGGAGCACACTCGCCAATGCCTGATCAAAATAGGGGATCACATCACGGAGTGTCTGAGAGAATACACCAACCCTGAACAGATCAAACAGTGGAGGAAAAATCTGTGGATTTTTGTTTCGAAATTCACTGAATTTGATGCAAGAAAACTGCATAAACTCTATAAACATGCCATCaagaaaagacaagaaaatGCTCAGGCAGTGGAGCAGAACACAAGCGCTGTAAATACACAAAGCTTTAAACATGCAGATGTTGAGCGGATGAAGGAATCGCAGCAGGACGACAGCAGCCGAGACAGCTACAGCTCTGATAGACATCATTCATCTCGCTATCATGAGCATAGTAAAGATCGGCACACTGGCGACTCGTACAGGAAGAGCTCCGATTCCAGGAAGAGACCTTACTCCTCCTTCAGCAATGGCAAAGAccacagagagcgagagagagaccagtacagagagagaggagagcgaCAGGACAGCAGATACTACAGCGACAGCAAGCACAGGAAGCTGGACGAGCACCGCTCCAGCAGAGAGCACCGATCAGAAAGCAACTCCAAGGACAGGACTCACTCCGAACACCGCTTCCACTCTGAGCACCGCTCTGCCTCTGACTACACGCATCACAAATCGTCCCGGGACTACCGCTACCATTCGGACTGGCAGCTGGAGCACCGGCCACGCTCGCCGTACGACTCCCGCTCGCCGCTGGGCCACCGCTCGCCCTTCGAATactcgtctgaccacagaagCACACCCGAACAGGTTTGGAGCGGCCGCAAGACATAAAGCTCTCCGCTCCGCTCGCTTCTAATTAGCCAtagacacacaacacacaggAAATGCCTTAGGGGACTGTCGGCCGCTGCACTGGGGCTCTGGGAGTGCCACCCTTTCCTACTCACCTCGGAGGAAACACAGATCacgtatttttgtatttaagagTTAGCTGCATTCTTTCGTAGGTGCTgcagagtaatttttttttaattattatttttataaattgactactttcctcttttgtttttgtttcgtttcgtttgttttttggtttcttttttttttacttggaaaCTGATGAATCCATGTTTCACTGTCACGTGCGACACTGGATCCAGACATACAGCCGTAAATAAACACGACGCAGCTTATTTAAGGAGTGTTGAGTGAAAAGGACGCTACAAACGTGTGTCGTCTTTATCCGCTAGAGGACCTGAGGGGTTTCTGTTCTGAAGGACTGGGGTTCACCTTCCAAAGTACCTCGTTTACAGTGTTTTGTGACCATTTTTGCCAATTTTTATCTGTAATTTTTCTTTCCATCAtgcttgaattatttaaatctgtCTCGGCTGTAAAATAATCTGGACTATTTTTAGCGCGCATCAGATAATGTCACTTTTTCACATTGTACTACTGTAAATTATTGTATAAAGTAAATCAAATGGGCTTTTCTCAGGCtggtatttttttaactatttccCCATCAACTCAGGctattttctctcctttttttgttttgacgtTTCTTAATCTCAGTAGTTTTGAATCATGGAATGGGGTAAATATTCCAACGTGTATTTGTTCTGTAGGATCGTTTGGTTTGTTGTTGATCTTTGGTTTTTCTCTATTTGTAAGTGAATTGGCCTCGCTTTATAACAGCATCATGTCAAAAAATAcaaactgtgtaaaaaaaaaaagggcatgAAAAGGTCGATCGTAGCTAGAGGCACTTATGAGCTCTCCTTAGAACATTTCCATGATAATCTTTCCTCTTGTTTTCTATAAATGTTGGCaataatgtaattttctatGCAGCCCGAGTGTTTTTCTGGTGACTGGCCCTAGTAAGTCAGAATGCTGTTACAGGACATACTGATGTATATAGATTTCCTTCTATATTTCAAATCCAAATTTACActgaaaatgcatgaatttttaaagtaattgttttatataattgtttataaagTCATTAAACTCAAATCACTGTT

Function

symbol description
chd1 Predicted to enable several functions, including ATP binding activity; DNA binding activity; and DNA helicase activity. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in castration-resistant prostate carcinoma and prostate cancer. Orthologous to human CHD1 (chromodomain helicase DNA binding protein 1).

NR:

description
chromodomain-helicase-DNA-binding protein 1

GO: NA

KEGG:

id description
K11367 CHD1; chromodomain-helicase-DNA-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250373.1 True 6897 mRNA 0.47 37 4131742 4153288

Neighbor

gene id symbol gene type direction distance location
dcp2 dcp2,LOC107702577,LOC107670035,LOC107564107 coding downstream 5210 4119378 ~ 4126532 (-)
ca9 LOC107568649,LOC107715873,LOC107670029,LOC107737123,LOC107572190,LOC107702555 coding downstream 15966 4106008 ~ 4115776 (-)
pdzph1 LOC107702580,LOC107670049,LOC107560411,LOC107558250,LOC107715841,LOC107706919,LOC107737152,LOC107579090 coding downstream 227619 3891642 ~ 3904123 (-)
pam pam,LOC107737006,LOC107670040,LOC107560403,LOC107715844,LOC107702561 coding downstream 252222 3843692 ~ 3879520 (-)
sec31a LOC107715884,LOC107702588 coding downstream 467861 3644069 ~ 3663881 (-)
macir zgc:194281,cunh5orf30,LOC107665462,LOC107740794,LOC107715868,LOC107670048,LOC107564120 coding upstream 2116 4155404 ~ 4164114 (-)
ppip5k2 ppip5k2 coding upstream 13734 4167022 ~ 4201388 (-)
sh2d4a sh2d4a,LOC107715862,LOC107665475,LOC107740790,LOC107564121 coding upstream 88013 4241301 ~ 4249943 (-)
nrg1 nrg1,LOC107575152,LOC107681480 coding upstream 205372 4358660 ~ 4407937 (-)
LOC122352396 tln1,LOC107715875,LOC107670039 coding upstream 437000 4590288 ~ 4627041 (-)
G74755 NA non-coding downstream 298 4130565 ~ 4131444 (-)
G74757 NA non-coding downstream 1731 4126895 ~ 4130011 (-)
G74737 NA non-coding downstream 122368 4007230 ~ 4009374 (-)
G74742 NA non-coding downstream 131955 3997901 ~ 3999787 (-)
G74739 map3k1,LOC107670047,LOC107737160,LOC107702559,LOC107715839,LOC107558252 non-coding downstream 138308 3992187 ~ 3993434 (-)
G74791 NA non-coding upstream 145448 4298736 ~ 4323950 (-)
G74796 NA non-coding upstream 210116 4363404 ~ 4364758 (-)
G74762 tln1,LOC107702558,LOC107715875,LOC107568645 non-coding upstream 341772 4495060 ~ 4496658 (-)
G74803 LOC107715875,LOC107737170,LOC107568645,LOC107670039,LOC107702558 non-coding upstream 357258 4510546 ~ 4510942 (-)
G74819 NA non-coding upstream 526415 4679703 ~ 4680232 (-)
LOC122352741 diras2,LOC107560410,LOC107736992,LOC107702570,LOC107558266,LOC107715878,LOC107670053 other downstream 219000 3905614 ~ 3912742 (-)
hnrnpd LOC107702593,LOC107715890,LOC107573849 other downstream 523954 3601612 ~ 3607788 (-)
LOC122353137 palm2,LOC107702598,LOC107715893,LOC107732273,LOC107653494,LOC107569382 other downstream 753958 3337339 ~ 3377784 (-)
LOC122352587 cntfr,LOC107554853,LOC107756542 other downstream 1364547 2717097 ~ 2767195 (-)
LOC122352692 NA other downstream 1934313 2194085 ~ 2197429 (-)
LOC122352369 colgalt1,LOC107672476,LOC107711180,LOC107757371,LOC107670492,LOC107567242,LOC108429625,LOC107587993 other upstream 866019 5019307 ~ 5028513 (-)
si:ch211-113d22.2 si:ch211-113d22.2,LOC107677989,LOC107705073,LOC107586211,LOC107688532 other upstream 2384834 6538122 ~ 6540973 (-)
sprn2 LOC107578968,LOC107720715 other upstream 2475137 6628425 ~ 6631188 (-)
G75454 LOC107552069,LOC107678002,LOC107586137,LOC107687386,LOC107742371,LOC108437806 other upstream 3024036 7177324 ~ 7180821 (-)
LOC122352929 LOC107675999,LOC107677996,LOC107552059,LOC107720693 other upstream 3370906 7524194 ~ 7528558 (-)

Expression


Co-expression Network