XLOC_000066 (abcb6a)


Basic Information

Item Value
gene id XLOC_000066
gene name abcb6a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 6135176 ~ 6158609 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000125
ATAAGTCATGGATGATGGAGTTGTACGGCGTGAGTTTATGACGTTTTGAATGAGCAGACGTTTTGAATGATTTAACATCGCTGGAATAATCATAATTCATCTGAAGGGATAGTTATTGAAGGACGCACTCGAAAGACTTGAAGGTGACGCTGGAAACAGATATTCTTCGTGTGGatccatcatcatcttcatcatggTGGAGATGAAGAGTTTCTGTGAGGCTGGCGTCTCCATGCAGCAGGTCTGGGTGGAGGGCGGCCTGACTCTGTGTTTCTACTTCACCCTGGTGCCATCCGTCCTCCtcaccctcctcttcctcttcgGCACACTGCTGTGTATTTGGTACAGCCGCTATGGCACAGACATGGAGCCCAAATTCGTCCCCCGCTCTGGACTGTACCGGCTGCAGGTGGGGCTGTCGGTGCTACTGATCCTGCAGGCTCTGGGCTGGATGGTGTTTCGGCTGAGCTGGAGCGCGGAGCTGCCGGGATATGTGGTTTTGTATGGATGTCTCTCCATGCTGGGCTGGATTTGGGCTGTAGTTTTGCTGCGTCTGGAGAGAAGGAAGGTTCTGGTGCGGGACAGAACCAGAGGACACAGTACTGTACTGTTGCTGTACTGGGCAGTAGCTTTCGCAGCCGATAATCTGGCATTTGTGTCCTGGATGAGCCCTCAGTGGTGGTGGAGTCTGGAGACGTCCGAGCAACAGATGGAGTTTGCATTCTGGCTGGTGCGATACTTCTGCTCAGGTTTGCTGTTCCTGTTAGGCCTCAAAGCTCCAGGTTTGCCCCGCCGGCCGTACATGCTTCTGGTCAATGAAGACGAGCGAGACGTGGAGCATGGAGCGCCCCTGTTGGGTAATTCTGATGAGGATCAGTCTACATGGAAAGACTTTGGCAAGAAGGTGCGTTTGTTGGTGCCATACATGTGGCCTAAAGGAAGTGTCCTGCTCCAGCTGCTGGTTCTGATGTGTCTCGGGATGCTGGGAATCGAGCGCGCCATCAATGTGTTTGTGCCCATCTACTACAAGAACATAGTGAACCAGCTGACAGACGGGAGCTCCTGGAAGACTCTGGCCATGACGGTGTGTGTTTATTGTCTCCTGAAGTTCCTGCAGGGAGGTGGAGCTGGTGCGTCTGGGTTTGTGAGTAACTTGCGTTCGTTCCTGTGGATTCGCGTGCAGCAGTACACTAACCGCGTGGTGCAGGTGCGGCTCTTCGCTCATCTGCATGCTCTATCTCTGCGCTGGCATCTGGGCCGCCGGACAGGAGACGTCCTGAGGAGCATCGACAGAGGAACATCCTCCATCAACAGCCTGCTCAGCTACATCGTGTTCAGCATCTTCCCCACCATCGCTGACATTGTCATCGCCATCGTCTATTTCATATCCAATTTCAATGCCTGGTTTGGCCTTATAGTCTTTGTATGCATGGCTCTCTACCTCACTCTCACCATCTTTATCACTGAATGGAGAACCAAATACAGGCGTGATATGAACACACAAGATAACAACGCCAAATCCAAAGCTGTGGATTCTTTATTGAACTTTGAGACGGTGAAATATTACAATGCAGAAAGTTACGAAGTGGGCCGCTTTGAGGACGCCATCCTGAAATACCAGGTATCGGAGTGGAAGACCAATGCATCTCTGGCGCTCTTAAATCAAACACAGAACCTCATCATTGGTTTGGGTTTGCTGACTGGATCTCTGCTTTGTGCGTATTTTGTGACTGAGGGAAAATTTCAGGTTGGAGATTATGTGCTGTTTGGAACGTACATCATCCAGCTCTACACTCCTCTCAACTGGTTTGGAACTTACTACCGAATGATCCAGAACTCCTTCATCGATATGGAAAGCATGTTCAAGCTCTTCACCGAGGAAGAAGAGGTGAAGGATGAAGTCAATGCAGGAAACCTTTATTTCAGACAGGGGAAAGTAGAGTTTGAGAACGTCTTCTTCAGCTACACACAAGGCAAGGAGATTCTGAAAGATGTCTCTTTTACCGTTCTCCCAGGACAAACAGTTGCTCTTGTGGGTCAGTCTGGATCAGGAAAAAGCACCATCATCCGTCTGCTCTTCCGCTTTTATGATGTTCAAGGCGGGTGTATAAAGATCGATGGCCAAGACATCTCAAAGGTGAAGCAGTCGTCTCTGCGCGCTCACATCGGTGTTGTCCCTCAGGACACGGTCCTGTTTAATGACAACATTCGAGACAACATCCGCTACGGTCGAGTCACGGCCACTGACCAGGAAGTGGAGGAAGCTGCAATCGCCGCCGACATCCATGACAAAATCATAGGCTTTCCAGATGGCTATGAGACTCAGGTGGGTGAGAGAGGGCTGAAGCTAAGCGGAGGAGAAAAGCAGAGAGTCGCCATCGCTCGCACCATCCTTAAAGCACCGCAAATCATCCTGCTGGATGAGGCCACATCTGCTCTAGACACTCAGACTGAGCGAAACATTCAGGCCTCGCTGGCTAAAGTCTGCGCCAACAGAACCACAGTTGTTGTGGCACACAGATTGTCAACTATCATCGGAGCTGACGTGATTCTTGTTCTTCGTGATGGCCAGATTGTGGAGAGAGGAAGGCATGAAGAGCTGCTGGCAAAGGGCGGCCTTTACTCTGACATGTGGCAGAAACAGCAGCAGGCGCAGGATTCAGACTCAGCTTCTGACTCGGAGACTAAAGACAGAAAATCGGAGAAACTACAGCCACAGACATCCACTACAGCACACAGGGGACACTAGACATAAGGGAATCGCAATATACGCCGGTATTATGTGCATTTTTAAGCTCAAATAGTGCTGTTTAGGCATGTCCGATTTTtaattgttagatttttttttggtttgctgccagtttttaaagggatagttcacccaaactgaAAACtctttcatcatttatttacactTCACGTCTCACAAACATGTCTGAGTTTCTTTTCT
>TCONS_00000126
TGATGGAGTTGTACGGCGTGAGTTTATGACGTTTTGAATGAGCAGACGTTTTGAATGATTTAACATCGCTGGAATAATCATAATTCATCTGAAGGGATAGTTATTGAAGGACGCACTCGAAAGACTTGAAGGTGACGCTGGAAACAGATATTCTTCGTGTGGatccatcatcatcttcatcatggTGGAGATGAAGAGTTTCTGTGAGGCTGGCGTCTCCATGCAGCAGGTCTGGGTGGAGGGCGGCCTGACTCTGTGTTTCTACTTCACCCTGGTGCCATCCGTCCTCCtcaccctcctcttcctcttcgGCACACTGCTGTGTATTTGGTACAGCCGCTATGGCACAGACATGGAGCCCAAATTCGTCCCCCGCTCTGGACTGTACCGGCTGCAGGTGGGGCTGTCGGTGCTACTGATCCTGCAGGCTCTGGGCTGGATGGTGTTTCGGCTGAGCTGGAGCGCGGAGCTGCCGGGATATGTGGTTTTGTATGGATGTCTCTCCATGCTGGGCTGGATTTGGGCTGTAGTTTTGCTGCGTCTGGAGAGAAGGAAGGTTCTGGTGCGGGACAGAACCAGAGGACACAGTACTGTACTGTTGCTGTACTGGGCAGTAGCTTTCGCAGCCGATAATCTGGCATTTGTGTCCTGGATGAGCCCTCAGTGGTGGTGGAGTCTGGAGACGTCCGAGCAACAGATGGAGTTTGCATTCTGGCTGGTGCGATACTTCTGCTCAGGTTTGCTGTTCCTGTTAGGCCTCAAAGCTCCAGGTTTGCCCCGCCGGCCGTACATGCTTCTGGTCAATGAAGACGAGCGAGACGTGGAGCATGGAGCGCCCCTGTTGGGTAATTCTGATGAGGATCAGTCTACATGGAAAGACTTTGGCAAGAAGGTGCGTTTGTTGGTGCCATACATGTGGCCTAAAGGAAGTGTCCTGCTCCAGCTGCTGGTTCTGATGTGTCTCGGGATGCTGGGAATCGAGCGCGCCATCAATGTGTTTGTGCCCATCTACTACAAGAACATAGTGAACCAGCTGACAGACGGGAGCTCCTGGAAGACTCTGGCCATGACGGTGTGTGTTTATTGTCTCCTGAAGTTCCTGCAGGGAGGTGGAGCTGGTGCGTCTGGGTTTGTGAGTAACTTGCGTTCGTTCCTGTGGATTCGCGTGCAGCAGTACACTAACCGCGTGGTGCAGGTGCGGCTCTTCGCTCATCTGCATGCTCTATCTCTGCGCTGGCATCTGGGCCGCCGGACAGGAGACGTCCTGAGGAGCATCGACAGAGGAACATCCTCCATCAACAGCCTGCTCAGCTACATCGTGTTCAGCATCTTCCCCACCATCGCTGACATTGTCATCGCCATCGTCTATTTCATATCCAATTTCAATGCCTGGTTTGGCCTTATAGTCTTTGTATGCATGGCTCTCTACCTCACTCTCACCATCTTTATCACTGAATGGAGAACCAAATACAGGCGTGATATGAACACACAAGATAACAACGCCAAATCCAAAGCTGTGGATTCTTTATTGAACTTTGAGACGGTGAAATATTACAATGCAGAAAGTTACGAAGTGGGCCGCTTTGAGGACGCCATCCTGAAATACCAGGTATCGGAGTGGAAGACCAATGCATCTCTGGCGCTCTTAAATCAAACACAGAACCTCATCATTGGTTTGGGTTTGCTGACTGGATCTCTGCTTTGTGCGTATTTTGTGACTGAGGGAAAATTTCAGGTTGGAGATTATGTGCTGTTTGGAACGTACATCATCCAGCTCTACACTCCTCTCAACTGGTTTGGAACTTACTACCGAATGATCCAGAACTCCTTCATCGATATGGAAAGCATGTTCAAGCTCTTCACCGAGGAAGAAGAGGTGAAGGATGAAGTCAATGCAGGAAACCTTTATTTCAGACAGGGGAAAGTAGAGTTTGAGAACGTCTTCTTCAGCTACACACAAGGCAAGGAGATTCTGAAAGATGTCTCTTTTACCGTTCTCCCAGGACAAACAGTTGCTCTTGTGGGTCAGTCTGGATCAGGAAAAAGCACCATCATCCGTCTGCTCTTCCGCTTTTATGATGTTCAAGGCGGGTGTATAAAGATCGATGGCCAAGACATCTCAAAGGTGAAGCAGTCGTCTCTGCGCGCTCACATCGGTGTTGTCCCTCAGGACACGGTCCTGTTTAATGACAACATTCGAGACAACATCCGCTACGGTCGAGTCACGGCCACTGACCAGGAAGTGGAGGAAGCTGCAATCGCCGCCGACATCCATGACAAAATCATAGGCTTTCCAGATGGCTATGAGACTCAGGTGGGTGAGAGAGGGCTGAAGCTAAGCGGAGGAGAAAAGCAGAGAGTCGCCATCGCTCGCACCATCCTTAAAGCACCGCAAATCATCCTGCTGGATGAGGCCACATCTGCTCTAGACACTCAGACTGAGCGAAACATTCAGGCCTCGCTGGCTAAAGTCTGCGCCAACAGAACCACAGTTGTTGTGGCACACAGATTGTCAACTATCATCGGAGCTGACGTGATTCTTGTTCTTCGTGATGGCCAGATTGTGGAGAGAGGAAGGGCATGAAGAGCTGCTGGCAAAGGGCGGCCTTTACTCTGACATGTGGCAGAAACAGCAGCAGGCGCAGGATTCAGACTCAGCTTCTGACTCGGAGACTAAAGACAGAAAATCGGAGAAACTACAGCCACAGACATCCACTACAGCACACAGGGGACACTAGACATAAGGGAATCGCAATATACGCCGGTATTATGTGCATTTTTAAGCTCAAATAGTGCTGTTTAGGCATGTCCGATTTTtaattgttagatttttttttggtttgctgccagtttttaaagggatagttcacccaaactgaAAACtctttcatcatttatttacactTCACGTCTCACAAACATGTCTGAGTTTCTTTTCT

Function

symbol description
abcb6a Predicted to enable ABC-type heme transporter activity and heme binding activity. Acts upstream of or within iris morphogenesis and melanocyte proliferation. Predicted to be located in membrane. Predicted to be active in vacuolar membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in dyschromatosis universalis hereditaria. Orthologous to human ABCB6 (ATP binding cassette subfamily B member 6 (Langereis blood group)).

GO:

id name namespace
GO:0097325 melanocyte proliferation biological_process
GO:0015886 heme transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0061072 iris morphogenesis biological_process
GO:0005774 vacuolar membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function
GO:0020037 heme binding molecular_function
GO:0015439 ATPase-coupled heme transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050517-9 Predicted to enable ABC-type heme transporter activity and heme binding activity. Acts upstream of or within iris morphogenesis and melanocyte proliferation. Predicted to be located in membrane. Predicted to be active in vacuolar membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in dyschromatosis universalis hereditaria. Orthologous to human ABCB6 (ATP binding cassette subfamily B member 6 (Langereis blood group)).

Ensembl:

ensembl_id ENSDARG00000063297

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000125 False 2950 mRNA 0.50 20 6135176 6158609
TCONS_00000126 True 2939 mRNA 0.50 20 6135188 6158609

Neighbor

gene id symbol gene type direction distance location
XLOC_000065 NA coding upstream 336084 5795013 ~ 5799092 (+)
XLOC_000064 NA coding upstream 406492 5706970 ~ 5728684 (+)
XLOC_000063 cpo coding upstream 547601 5576151 ~ 5587575 (+)
XLOC_000062 atic coding upstream 631046 5437390 ~ 5504130 (+)
XLOC_000061 stk16 coding upstream 700915 5422439 ~ 5434261 (+)
XLOC_000067 cnppd1 coding downstream 3321 6161930 ~ 6185532 (+)
XLOC_000068 retreg2 coding downstream 31340 6189949 ~ 6210718 (+)
XLOC_000069 fastkd2 coding downstream 66884 6225493 ~ 6272146 (+)
XLOC_000070 LO018629.1 coding downstream 148696 6307305 ~ 6329292 (+)
XLOC_000071 hecw2b coding downstream 198450 6357059 ~ 6366066 (+)
XLOC_000059 NA non-coding upstream 821581 5311479 ~ 5313595 (+)
XLOC_000057 NA non-coding upstream 1105021 4901460 ~ 5030155 (+)
XLOC_000056 FO744838.1 non-coding upstream 1454699 4598060 ~ 4680477 (+)
XLOC_000072 NA non-coding downstream 221269 6379878 ~ 6554470 (+)
XLOC_000073 NA non-coding downstream 239601 6398210 ~ 6403223 (+)
XLOC_000076 NA non-coding downstream 506424 6665033 ~ 6668339 (+)
XLOC_000077 NA non-coding downstream 600574 6759183 ~ 6760930 (+)
XLOC_000078 CU302223.1 non-coding downstream 629081 6787690 ~ 6787804 (+)

Expression


Co-expression Network