slc38a9 (slc38a9,LOC107564110,LOC107670042,LOC107740785,LOC107715861,LOC107566906,LOC107665474)


Basic Information

Item Value
gene id slc38a9
gene name slc38a9,LOC107564110,LOC107670042,LOC107740785,LOC107715861,LOC107566906,LOC107665474
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 4231670 ~ 4241404 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250412.1
GTAGAGGTGGACATGCACTACGAATCCCATGCGACATTTGAAAAGCATGTGCGGTTTAAATACTGAGTTtccttttcaaaacatttgtttgtctcAGCAGATTGTCGGCTTTTGTCAGCATCGGTGATGAGGGTTTAAAGCACAAGCATTATGGATGAGGACAGTAAACCGTTACTCGGATCAGTGCGAGCTGTGGAGTCTTACGCAGATTCACTGGACCCCAAGCAAAGAAGGCCGTTTCATGTGGAGCCCAGAAACATAGTGGGAGATGAGATTCAGGAACGGGTATCCGCTGAAGCTGCAGCACTGAGCAGCAGAGTTCATTACTATGGCCGTTTGACAGCCTCTTCAGACCGACTGCTGGTCCCTCCAGATCATGTGATTCCTTCTCCCGAGGACATTTATATCTACAGTCCACTGGGAACAGCGTTCAAAGTGCAGGGGGGTGACAGTACTGCTAAAAACCCCAGCATTGTCACAATCTTCGCTATATGGAACACCATGATGGGAACATCAATATTAAGTATGCCATGGGGCATAAAACAAgCTGGTTTTACTCTGGGCATCATCATTATTGTTCTCATGGGCCTGCTGACGCTCTACTGCTGCTACAGAGTATTAAAGTCCACAAAGTCCATACCATATGTAGACACGTCAGACTGGGAATTTCCtgatgtgtgtaaatattacTTTGGGGGATTCGGAAAATGGTCGAGTCTTGTTTTCTCACTGGTGTCACTGATTGGTGCAATGGTGGTCTACTGGGTCCTTATGTCCAACTTCCTGTTCAATACAGGAAAATTCATTTACAACTATGTTCACAATGTCAACACGTCAGATGCTTTTGGCACAAATGGAACAGACAGAGTGATATGTCCATATCCAAATGTGGATCCAGACGGGGACCGTACTCTCGACTACTATGCAAGTGATAACGGCACAGGACAGGTGTTTGATCGCTGGTGGAGTAAAACCAACACCATCCCATTTTACCTCATTGTTCTGCTGCTGCCGCTCCTCAATTTCCGCTCTGCTTCCTTTTTCGCTAGGTTCACCTTCCTGGGCACCTTGTCAGTGGTTTATCTCATCTTTTTGGTCACATATAAAGCTATTCGATTGGGCTTTCACCTGGAGTTCCACTGGTTTGATTCAACGGCGTTTTTTGTTCCAGAGTTCAGATCACTGTTTCCTCAGCTGAGTGGGGTTCTCACACTGGCGTTTTTTATTCACAACTGCATCATCACGCTTATGAAAAACAACAGACATCAGGAAAACAACGTGAGGGATCTGTCATTGGCGTACCTGCTGGTGGGGTTAACATACCTCTATGTGGGCGTGCTGATCTTTGCTGCTTTCCCATCACCACCGCTGTCGAAAGACTGCATTGAACCAAACTTTCTGGATAATTTCCCCAGCAGTGACGTCCTGGTGTTTGTTGCAAGGACTTGTCTTCTGTTCCAGATGACCACAGTGTTTCCTCTGCTGGGGTACCTGGTGCGTGTGCAGCTCATGGGACAGGTCTTTGGCGACCATTATCCAGGTTTCCTTCATGTGTTTATTCTAAACCTTCTTCTTGTGGGAGCTGGAGTTCTTATGGCCAGGTTTTACCCCAACATTGGCTCCATCATCAGGTATTCAGGGGCCATATGTGGCTTGGCTCTGGTGTTTGTGCTTCCCTCTCTGATCCACATGGTCTCACTGAAACGCAGAGGCGAGTTACGCTGGCCTTCCGTTGTCTTCCATGGCTTCCTCATTCTGCTTGGAGTGGCCAATCTGTTCGGCCAGTTCTTCATGTAGCGCACTGTGCCTTAAATCAACCTAACGTCGCCTGTGTTTACCTGACGGAAGAGGAATTGGTGAGTCTGGAACGGTTCCTTGGATAGTTCTCACAGGAATGAAGTCGTAGGACTGGAAGGACAAATAGTACTAATCGAGTACCCATGGATTTCATTACAAAAACTCAAAGACACACGACCtcttatttttgacattttaaaagggATTCATTCAAGCTATGCATTTATCATGCTACTTTTTAACGGCTATCATTAGCTATCAACTATTTCAGCAGGAAATcaatagttttaaatgtatttcattttttttttattcagaatcaCTATAAAGATTTGCTTCCTCAATCTGAATTTGAAACATTTAGTTGAGTGCAGAGTGAAGACACTTATGTTACATGAAACGggcaggtgttttttttattacttgaaCTGTACCTGTGGATTCTGCTTATTcacattcaattaaattattcaCATTCAAAATCAAGTGCTCCAAAAACTAAAGAAAGCTGATTCAGAAAGTCAGCGTGCAACATAAATGTAACCTCAAGGTCTTCCGGACCTGGTCCACACTGAGTGTCGTAGAAATGTTGTGAAATGTAATCTGCACACAGTAATTAATGGATGCATTAAGGGAAATGGAAGTCTCTATATTTGTTTTGAGCTTTTTGAAACATGTGCACATCAATAAGGGAAGCTTAATTTGCACACTTTTGTGAGATTTTCAAAGCTTATGTCACTTTGAAGTGTATGTAAATTTccatttatgtatgtttttgtcttgtgtattTTCAAAcgattaaattgaaattaaattgtgaCCTCTCTGTATTAGAGGATAATAATGAAGTGCAAATTGAACCCAGCTCAGTTAAAACCTGTATGGTGTTGTCAGCTTGAGAGTGTTTTCTTCATAAAGTTGTTTCATTACCTTTAAAAAGTATTGAATGTTTTTAAGGAAAATGTCAGTTGACCAAATGAATACATGTCTTCATATCACAGCCAAGCacttttattataaagtgtCAGAAGAACAAAACTACATGGTTTCAAACGTgctgtaattaaaaagaataaaaacttgcaatatttgttttgta

Function

symbol description
slc38a9 Enables arginine transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport; cellular response to amino acid stimulus; and positive regulation of TOR signaling. Predicted to act upstream of or within amino acid transport. Is integral component of membrane. Orthologous to human SLC38A9 (solute carrier family 38 member 9).

NR:

description
PREDICTED: sodium-coupled neutral amino acid transporter 9

GO:

id name namespace
GO:0006814 sodium ion transport biological_process
GO:0006865 amino acid transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K14995 SLC38A9; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250412.1 True 2896 mRNA 0.42 15 4231670 4241404

Neighbor

gene id symbol gene type direction distance location
ddx4 LOC107665473,LOC107715859,LOC107740783,LOC107670045 coding upstream 1905 4209639 ~ 4229765 (+)
reep5 reep5,LOC107740782,LOC107715872,LOC107098485 coding upstream 100238 4126893 ~ 4131432 (+)
zgc:114200 zgc:114200,aph1a,LOC107572194,LOC107737132,LOC107670051,LOC107572192,LOC108427283 coding upstream 126883 4098046 ~ 4104787 (+)
tpm2 tpm2,LOC107670037,LOC107737084,LOC108276716,LOC108427282,LOC103044350,LOC108242564,LOC107572193,LOC107715874,LOC100710292,LOC106571564 coding upstream 134767 4081583 ~ 4096903 (+)
hmgcs1 hmgcs1,LOC107715876,LOC107737058 coding upstream 222300 4001799 ~ 4009370 (+)
psd3l LOC107564111,LOC107715858,LOC107665472,LOC107740791,LOC107681482,LOC108427269 coding downstream 17116 4258520 ~ 4336441 (+)
fut10 fut10,LOC107681479,LOC107564112,LOC107740796 coding downstream 103809 4345213 ~ 4349700 (+)
LOC122353166 tex15,LOC107715856 coding downstream 625310 4866714 ~ 4887569 (+)
purg purg,LOC107715864,LOC107758727,LOC107564122,LOC107682501,LOC107102481 coding downstream 627781 4869185 ~ 4875661 (+)
ppp2cb ppp2cb,LOC107758729,LOC105021738 coding downstream 650186 4891590 ~ 4906268 (+)
G74686 NA non-coding upstream 30280 4197532 ~ 4201390 (+)
G74659 NA non-coding upstream 55552 4164958 ~ 4176118 (+)
G74681 zgc:194281,cunh5orf30,LOC107665462,LOC107740794,LOC107670048,LOC107564120,LOC107715868 non-coding upstream 71353 4155047 ~ 4160317 (+)
G74680 NA non-coding upstream 78391 4151458 ~ 4153279 (+)
G74667 NA non-coding upstream 109012 4120864 ~ 4122658 (+)
G74689 sh2d4a,LOC107740790,LOC107564121,LOC107715862,LOC107665475 non-coding downstream 3794 4245198 ~ 4249108 (+)
G74657 NA non-coding downstream 293196 4534600 ~ 4537373 (+)
G74704 NA non-coding downstream 353919 4595323 ~ 4596083 (+)
G74712 NA non-coding downstream 381153 4622557 ~ 4622766 (+)
G74814 NA non-coding downstream 438290 4679694 ~ 4680232 (+)
LOC122352388 tln1,LOC107715875,LOC107670039,LOC107568645,LOC107702558,LOC107737170 other upstream 111223 4013034 ~ 4120447 (+)
cdc42se2 cdc42se2 other upstream 537074 3669003 ~ 3694596 (+)
zgc:113274 LOC107715885,LOC107702590,LOC107720383,LOC107560406 other upstream 563664 3663912 ~ 3668006 (+)
si:ch73-234b20.5 si:ch73-234b20.5,LOC107702596,LOC107558257,LOC107653492,LOC107573851,LOC107732123,LOC108440734 other upstream 627454 3596606 ~ 3604216 (+)
lyrm7 lyrm7,LOC107732862,LOC107715852 other upstream 641559 3588418 ~ 3590111 (+)
LOC122352783 tln1,LOC107715875,LOC107670039,LOC107568645,LOC107702558 other downstream 239863 4481267 ~ 4529002 (+)
LOC122352404 LOC107670527,LOC107567246,LOC107587997,LOC107757377,LOC107711240,LOC107672489 other downstream 875462 5116866 ~ 5123373 (+)
LOC122352567 ywhah,LOC107562560,LOC107744159,LOC107713377,LOC107555530,LOC107688000 other downstream 996875 5238279 ~ 5250137 (+)
G74965 NA other downstream 1015434 5256838 ~ 5258823 (+)
ccl19b LOC107744181,LOC107677997,LOC107567444,LOC107555521,LOC107713300,LOC107688602,LOC107713257 other downstream 1257243 5498647 ~ 5500388 (+)

Expression


Co-expression Network