sh2d4a (sh2d4a,LOC107715862,LOC107665475,LOC107740790,LOC107564121)


Basic Information

Item Value
gene id sh2d4a
gene name sh2d4a,LOC107715862,LOC107665475,LOC107740790,LOC107564121
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 4241301 ~ 4249943 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250414.1
GCCGGAGGAAGAAGCGAGCGTAGGCGGGAACTCAGTTTGGGTTGTAGAGTTAAAGGGTGTGTACTTCACCACAGATTTCACTCGACATTTACCTTTCTGTACAGGCTTCAGGTGTTCTGGTTGACATGGAGCTTCATGCTCAGATTCGCTATACTACAAGATGAATCTGGATTCTTTATAGACACACCACAGAAGTGCTGCGAGCAAGTAATGAACGTGTGAAGCATTACTTCAGCGTCTAAACCACCAGACACGAAGAAGAGGGATATTCCCTTTTAGTGAAGGTATTTGAGCTTGTCAAGGAGGTGTGTGTTACTGAGGCGTGAAGATGCTGCAGCAGATATTGGCTGACATGTACATCGAGCCGGAACTGCTGGCCGAACTGAATGAGGAACAGAAGCAGATTCTGTTCTTTAAGATGAGAGAGGAGCAGATCCggaaatggagagaaagagagacgcGGATGGAGAAAGAGGAAGCTGCACGCGTTAAAGTCAAAAAAGTTTCAGGAAAGATGGTGTCGTGGATGAAGGGTCTGGATGACGATGTGTGGGTTTGGGTGATGGGAGAGCATCATGATGACAAACCCTACAATCAAATCTGTGATGAGATCATGGCCCAGAGAGCAGCCCTGCAGGCccagagagaggcagagaaacTCAGGGCTAAGAAAGAGGCAGAGCTGGAGAAGCGCTTTTCTGGCCTGTATCTCGAACCAGAGAAGGTGGTTTTGTCAGAGCAGGAGGTTCAGCAGAAGGAGCAGAGGAGAGCGGAGATGGAGCTCAAGAAACTGGAGATGGAGGAGAGGCGTAAGGCTGAGGAGGAGCTGAGGAGGCTGGAGCAGGAGAGAAAGCAGCAGATCTACATCAGCCTGAAGGAGGTGCAGGGCAGTAAACACACTCGTGAGGAGGAGGACAAGGAGTGGCTGAAGACATTGCAGAAGTCAAAAGCTGCAGACGTGCGCAGACAATCCCTGGCCAAGCAAACTATCGAGGACCACCGCAGGCGCTCACTCAAAGCTCTGGAAAGAGGACGCGTCGCGGCCATGACAAAAGCCTTCGGCAGCACAAACCCAAACCCTCcacccaaacccaaacccagAAACACCGCAAACAACAGCGGCGCTATCAGCCGGAAGGGTGGCATGCAGCGCTCAATGTCAGCATCTAGTCGAGATCACATTATTCGCTGGTTCAAGGAGGAACAGCTGCCGCTCAGAGCTGGATTCCAGCGTGACCAGAGCCGGATCGCACCCTGGTTTCACGGTATAATATCCCGCGAACAGGCCGAGGCGCTGCTGGCCGAGGGCAAGCCTGGGTTCTTCCTGGTGCGCGTCAGTGAGAGGATCTTTGGATATGTGCTCTCCTACCAATCCGGGGAGGGAACTAAGCACCTGCTGATTGATGCTTCAGAGAACTGTTACATGCTGCTGGGAGACCAGATCAGATTTGGCTCGCTCACTGAACTGGTGGAGTATCATGAGGTGGAGCCGCTGAGCTCATCTGGAGTGGAGGAGTATCTGCGGAGCGCGTGCGGACAGATTGCGGCCACAGCCGATTACGCAGATCTCTTCACCTGAACACAATAAACACGAGAGTGGAGAACCTGTGGCTTCACACCATCATCAGCTCTTCAAACGCAATAACATTAATAACCGCTGCCAGTCAGCAGGTGCGTTTATAAGCGTCGTCGCACTTTAGACGTACCCATATGAAGTTGAAATCAaacattaaactgcatttttccatttcaaaacatGAGATCGTTCCTTTGCGTGCCAGAGCAGATGAGATTAAGagaaaagtatattttttataaaacagtacttttttaatttcagaaactGACGTGAATCTTTTTATTCTATATGCCAACTAACTGGTCAGCTTAACACAAACCAGATGTCACAGATGTTACCAGAAATGACGTAAAGTATGAAAGCGatgtacaaaacaaatattgcaagtttttattctttttaattacagcACGTTTGAAACCATGTAGTTTTGTTCTTCTGacactttataataaaagtGCTTGGCTGTGA
>XM_043250415.1
CTGCTGGCCGAACTGAATGAGGAACAGAAGCAGATTCTGTTCTTTAAGATGAGAGAGGAGCAGATCCggaaatggagagaaagagagacgcGGATGGAGAAAGAGGAAGCTGCACGCGTTAAAGTCAAAAAAAGTTTCAGGAAAGATGGTGTCGTGGATGAAGGGTCTGGATGACGATGTGTGGGTTTGGGTGATGGGAGAGCATCATGATGACAAACCCTACAATCAAATCTGTGATGAGATCATGGCCCAGAGAGCAGCCCTGCAGGCccagagagaggcagagaaacTCAGGGCTAAGAAAGAGGCAGAGCTGGAGAAGCGCTTTTCTGGCCTGTATCTCGAACCAGAGAAGGTGGTTTTGTCAGAGCAGGAGGTTCAGCAGAAGGAGCAGAGGAGAGCGGAGATGGAGCTCAAGAAACTGGAGATGGAGGAGAGGCGTAAGGCTGAGGAGGAGCTGAGGAGGCTGGAGCAGGAGAGAAAGCAGCAGATCTACATCAGCCTGAAGGAGGTGCAGGGCAGTAAACACACTCGTGAGGAGGAGGACAAGGAGTGGCTGAAGACATTGCAGAAGTCAAAAGCTGCAGACGTGCGCAGACAATCCCTGGCCAAGCAAACTATCGAGGACCACCGCAGGCGCTCACTCAAAGCTCTGGAAAGAGGACGCGTCGCGGCCATGACAAAAGCCTTCGGCAGCACAAACCCAAACCCTCcacccaaacccaaacccagAAACACCGCAAACAACAGCGGCGCTATCAGCCGGAAGGGTGGCATGCAGCGCTCAATGTCAGCATCTAGTCGAGATCACATTATTCGCTGGTTCAAGGAGGAACAGCTGCCGCTCAGAGCTGGATTCCAGCGTGACCAGAGCCGGATCGCACCCTGGTTTCACGGTATAATATCCCGCGAACAGGCCGAGGCGCTGCTGGCCGAGGGCAAGCCTGGGTTCTTCCTGGTGCGCGTCAGTGAGAGGATCTTTGGATATGTGCTCTCCTACCAATCCGGGGAGGGAACTAAGCACCTGCTGATTGATGCTTCAGAGAACTGTTACATGCTGCTGGGAGACCAGATCAGATTTGGCTCGCTCACTGAACTGGTGGAGTATCATGAGGTGGAGCCGCTGAGCTCATCTGGAGTGGAGGAGTATCTGCGGAGCGCGTGCGGACAGATTGCGGCCACAGCCGATTACGCAGATCTCTTCACCTGAACACAATAAACACGAGAGTGGAGAACCTGTGGCTTCACACCATCATCAGCTCTTCAAACGCAATAACATTAATAACCGCTGCCAGTCAGCAGGTGCGTTTATAAGCGTCGTCGCACTTTAGACGTACCCATATGAAGTTGAAATCAaacattaaactgcatttttccatttcaaaacatGAGATCGTTCCTTTGCGTGCCAGAGCAGATGAGATTAAGagaaaagtatattttttataaaacagtacttttttaatttcagaaactGACGTGAATCTTTTTATTCTATATGCCAACTAACTGGTCAGCTTAACACAAACCAGATGTCACAGATGTTACCAGAAATGACGTAAAGTATGAAAGCGatgtacaaaacaaatattgcaagtttttattctttttaattacagcACGTTTGAAACCATGTAGTTTTGTTCTTCTGacactttataataaaagtGCTTGGCTGTGA

Function

symbol description
sh2d4a Predicted to be active in cytoplasm. Orthologous to human SH2D4A (SH2 domain containing 4A).

NR:

description
SH2 domain-containing protein 4A

GO: NA

KEGG:

id description
K17577 SH2D4A; SH2 domain-containing protein 4A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250414.1 True 2050 mRNA 0.49 9 4241301 4249943
XM_043250415.1 False 1681 mRNA 0.49 8 4241301 4249007

Neighbor

gene id symbol gene type direction distance location
ppip5k2 ppip5k2 coding downstream 39913 4167022 ~ 4201388 (-)
macir zgc:194281,cunh5orf30,LOC107665462,LOC107740794,LOC107715868,LOC107670048,LOC107564120 coding downstream 77187 4155404 ~ 4164114 (-)
chd1 chd1,LOC107665465,LOC107670034 coding downstream 88013 4131742 ~ 4153288 (-)
dcp2 dcp2,LOC107702577,LOC107670035,LOC107564107 coding downstream 114769 4119378 ~ 4126532 (-)
ca9 LOC107568649,LOC107715873,LOC107670029,LOC107737123,LOC107572190,LOC107702555 coding downstream 125525 4106008 ~ 4115776 (-)
nrg1 nrg1,LOC107575152,LOC107681480 coding upstream 108717 4358660 ~ 4407937 (-)
LOC122352396 tln1,LOC107715875,LOC107670039 coding upstream 340345 4590288 ~ 4627041 (-)
LOC122353167 wrn,LOC107715857,LOC107573262,LOC107758726 coding upstream 573521 4823464 ~ 4867579 (-)
ubxn8 ubxn8,LOC107715867 coding upstream 655938 4905881 ~ 4911182 (-)
LOC122352400 gmip,LOC107672475,LOC107670530,LOC107757342,LOC107587992,LOC107711163 coding upstream 750741 5000684 ~ 5017151 (-)
G74755 NA non-coding downstream 109857 4130565 ~ 4131444 (-)
G74757 NA non-coding downstream 111290 4126895 ~ 4130011 (-)
G74737 NA non-coding downstream 231927 4007230 ~ 4009374 (-)
G74742 NA non-coding downstream 241514 3997901 ~ 3999787 (-)
G74739 map3k1,LOC107670047,LOC107737160,LOC107702559,LOC107715839,LOC107558252 non-coding downstream 247867 3992187 ~ 3993434 (-)
G74791 NA non-coding upstream 48793 4298736 ~ 4323950 (-)
G74796 NA non-coding upstream 113461 4363404 ~ 4364758 (-)
G74762 tln1,LOC107702558,LOC107715875,LOC107568645 non-coding upstream 245117 4495060 ~ 4496658 (-)
G74803 LOC107715875,LOC107737170,LOC107568645,LOC107670039,LOC107702558 non-coding upstream 260603 4510546 ~ 4510942 (-)
G74819 NA non-coding upstream 429760 4679703 ~ 4680232 (-)
LOC122352741 diras2,LOC107560410,LOC107736992,LOC107702570,LOC107558266,LOC107715878,LOC107670053 other downstream 328559 3905614 ~ 3912742 (-)
hnrnpd LOC107702593,LOC107715890,LOC107573849 other downstream 633513 3601612 ~ 3607788 (-)
LOC122353137 palm2,LOC107702598,LOC107715893,LOC107732273,LOC107653494,LOC107569382 other downstream 863517 3337339 ~ 3377784 (-)
LOC122352587 cntfr,LOC107554853,LOC107756542 other downstream 1474106 2717097 ~ 2767195 (-)
LOC122352692 NA other downstream 2043872 2194085 ~ 2197429 (-)
LOC122352369 colgalt1,LOC107672476,LOC107711180,LOC107757371,LOC107670492,LOC107567242,LOC108429625,LOC107587993 other upstream 769364 5019307 ~ 5028513 (-)
si:ch211-113d22.2 si:ch211-113d22.2,LOC107677989,LOC107705073,LOC107586211,LOC107688532 other upstream 2288179 6538122 ~ 6540973 (-)
sprn2 LOC107578968,LOC107720715 other upstream 2378482 6628425 ~ 6631188 (-)
G75454 LOC107552069,LOC107678002,LOC107586137,LOC107687386,LOC107742371,LOC108437806 other upstream 2927381 7177324 ~ 7180821 (-)
LOC122352929 LOC107675999,LOC107677996,LOC107552059,LOC107720693 other upstream 3274251 7524194 ~ 7528558 (-)

Expression


Co-expression Network