dcp2 (dcp2,LOC107702577,LOC107670035,LOC107564107)


Basic Information

Item Value
gene id dcp2
gene name dcp2,LOC107702577,LOC107670035,LOC107564107
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 4119378 ~ 4126532 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250417.1
TGAAAGTTTTCATGCGGCGCAATATTTTTAGCTTGTTAGCATGCTAGCATCAGCGTCGTCGATAAAAATTCACAGCACTACTTGCTCTTTTATTCTTAAGCGTTTGAATAGTACAGAACCATGTACTTTTGCCACATATTATAAATGCGAAGCACGCAAGTGTAGTAGCTTTGCGCTGTTTTTAACGCACTAGTCTTGCTTGATCGGGATGTTTTTACCCTTAACATGGAGACAAAAAGAGGGGAGATTCCTAACGGGGTGCTGGATGACCTTTGCAGTCGCTTTATTCTTCACATCCCCAGTGAGGAGAGGGACAATGCCATCAGAGTTTGCTTCCAGATTGAGCTTGCCCATTGGTTTTACCTGGACTTCTGCATGCAAAATTCACCAGGACTACCTCAGTGTGGGATAAGAGACTTTGCCAAGGCTGTTTTTAATCACTGTCCATTCCTGCTGCCCCAAGGAGAGGATGTTCAGAAGGTTTTAGAGCAGTGGAAAGAGTACAAGATGGGTGTACCTACATTTGGTGCCATTATTCTTGATGAAACGCTTGATAATgtGTTAATGGTCCAGGGTTACCTGGCCAAGTCTGGCTGGGGTTTTCCTAAAGGGAAAGTCAATGAAGATGAGGCTTTCCATGACTGCGCTGTGAGAGAAGTTTTGGAGGAGACAGGCTTTGACATCCGAGATCGTATCTGCCAAAAAACCTACATTGAACAGAGAATTTCAGATCAGTTGGTTCGATTGTATATTATACCCGGAGTTCCTAAAGACACCAGGTTTAACCCCAAGACCAGAAAAGAGATCAGGAACATCGAATGGTTCCCAGTGGATAAACTACCTTGCCACAGGAATGATATGACACCGAAATCCAAGCTTGGACTGGCTCCTAACAAGTTTTTTATGGCTATTCCATTTATGAGGCAGCTCAGAGAGTGGATTGCAAAACACAAAGGAGAGTCAACAAGCAGTGATGAGGATTTTGCATCCAACGGTAGCACACCTTGCAAACCATTCCGAACTAAGCCTAGAAGGTCTCAGATGTTGGTGGAAGCATCTCCTGAAAGCTGGTCAAAGCAAAAACCACAGAAACCCTTTGGACAAACCACCCAGAGTGAGTTAGTAGACATGCTTAAACCCAAGAACTATGTGAAAAGTAACAGCAAGAAACACCAGGAGTCTCCAAACCTGAAAAAAAGGGTTAATGGTGTCAGCCAGCAGCAGaaAGATGAGAAGAAACTTCTGCCCAGAAGACTGCAGGATAACTTTGACACGGATGCAGCCGGTGAAGTCTATGGCTGTAACGGACAGGCGGACTTGTGTTACGGGGAATACATCCTCTCCTCACGGTCTTTTCTCAGCTTCAGATTTGACAAAGAGGCAATCATGAAATCCTGCTTTGAGTCCTAAATATCTGCTGCACTGCCTCTGGTTTTTAAAAGATATACGACACAGCAAATTTCCTTTGGATCTACAAGTGGATCTTCTGCGCTGTAAACTTGTTAGTCGAGATGCATTCGGTGTTGGACCAAGATGACagacaaattacaaaaattccTTTTTTCACACACTCACGTCAGTTCCTATTAATCAGGATCTGGAATGCTGTTAGCTCGAGTTCTTTTTAGACTTTATATTTATGCTACTTGTGCCCAATCATGAGTGCATAATCACTAAAGAGAAGTGTTTCTTGGTCAACttgttacaaaaataacttttcctGGGTTTGTCCGTAACACGCTTAACGATAGCTTGGTTCTGAGCCCCTGGAGTGTGTGTTGTACTTTTCTTATTTCATTGtgaattacaataataatcGGTCCAGCTGTATGCGTAATTTCTGTGGCTGAAGTcatctgtgtttgttgtttCCTGTTTTTGGTGTTAAACGTAAAGCAAATATAAGATGCTGCTCAAAAAGCATGCTTTCAGAGCGTCACGTGACTAATACAGTACAGACAGGGTGGgcataaaaacaggaaaaccCATTGAAGCACTAAATAGATTATCAAGTCCTAGACATCACCAAATGTCTATTTAGTATGACGTTGAGGTGGAGGATGTGCAGTTTGATAAATGACATTTCGTCCGTGTTTCcaataagaaaaatgtcttcagtTGTTTGGTCaagctgtttgttttctgttcattgatatttttatcatgCTTCACATGGTTCCCAGGTTTTCCACACCCTctactatattaatattttctctgTGAAATGGCACTGATATCTGTGGTAAGATGATGTACAATTATGCAACATGATTTGCTCGGCCACATTATCCACggtttgtattgttttttttttctttctcatttttggTAAATAAAGACACTTTCTTAATGAG

Function

symbol description
dcp2 Predicted to enable m7G(5')pppN diphosphatase activity. Acts upstream of or within mRNA catabolic process. Predicted to be active in P-body. Orthologous to human DCP2 (decapping mRNA 2).

NR:

description
PREDICTED: m7GpppN-mRNA hydrolase isoform X1

GO:

id name namespace
GO:0030145 manganese ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12613 DCP2; mRNA-decapping enzyme subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250417.1 True 2354 mRNA 0.42 11 4119378 4126532

Neighbor

gene id symbol gene type direction distance location
ca9 LOC107568649,LOC107715873,LOC107670029,LOC107737123,LOC107572190,LOC107702555 coding downstream 3602 4106008 ~ 4115776 (-)
pdzph1 LOC107702580,LOC107670049,LOC107560411,LOC107558250,LOC107715841,LOC107706919,LOC107737152,LOC107579090 coding downstream 215255 3891642 ~ 3904123 (-)
pam pam,LOC107737006,LOC107670040,LOC107560403,LOC107715844,LOC107702561 coding downstream 239858 3843692 ~ 3879520 (-)
sec31a LOC107715884,LOC107702588 coding downstream 455497 3644069 ~ 3663881 (-)
tmem150c tmem150c,LOC107558260 coding downstream 493595 3617515 ~ 3625783 (-)
chd1 chd1,LOC107665465,LOC107670034 coding upstream 5210 4131742 ~ 4153288 (-)
macir zgc:194281,cunh5orf30,LOC107665462,LOC107740794,LOC107715868,LOC107670048,LOC107564120 coding upstream 28872 4155404 ~ 4164114 (-)
ppip5k2 ppip5k2 coding upstream 40490 4167022 ~ 4201388 (-)
sh2d4a sh2d4a,LOC107715862,LOC107665475,LOC107740790,LOC107564121 coding upstream 114769 4241301 ~ 4249943 (-)
nrg1 nrg1,LOC107575152,LOC107681480 coding upstream 232128 4358660 ~ 4407937 (-)
G74737 NA non-coding downstream 110004 4007230 ~ 4009374 (-)
G74742 NA non-coding downstream 119591 3997901 ~ 3999787 (-)
G74739 map3k1,LOC107670047,LOC107737160,LOC107702559,LOC107715839,LOC107558252 non-coding downstream 125944 3992187 ~ 3993434 (-)
G74615 NA non-coding downstream 287286 3831602 ~ 3832092 (-)
G74624 NA non-coding downstream 291350 3827125 ~ 3828028 (-)
G74757 NA non-coding upstream 363 4126895 ~ 4130011 (-)
G74755 NA non-coding upstream 4033 4130565 ~ 4131444 (-)
G74791 NA non-coding upstream 172204 4298736 ~ 4323950 (-)
G74796 NA non-coding upstream 236872 4363404 ~ 4364758 (-)
G74762 tln1,LOC107702558,LOC107715875,LOC107568645 non-coding upstream 368528 4495060 ~ 4496658 (-)
LOC122352741 diras2,LOC107560410,LOC107736992,LOC107702570,LOC107558266,LOC107715878,LOC107670053 other downstream 206636 3905614 ~ 3912742 (-)
hnrnpd LOC107702593,LOC107715890,LOC107573849 other downstream 511590 3601612 ~ 3607788 (-)
LOC122353137 palm2,LOC107702598,LOC107715893,LOC107732273,LOC107653494,LOC107569382 other downstream 741594 3337339 ~ 3377784 (-)
LOC122352587 cntfr,LOC107554853,LOC107756542 other downstream 1352183 2717097 ~ 2767195 (-)
LOC122352692 NA other downstream 1921949 2194085 ~ 2197429 (-)
LOC122352369 colgalt1,LOC107672476,LOC107711180,LOC107757371,LOC107670492,LOC107567242,LOC108429625,LOC107587993 other upstream 892775 5019307 ~ 5028513 (-)
si:ch211-113d22.2 si:ch211-113d22.2,LOC107677989,LOC107705073,LOC107586211,LOC107688532 other upstream 2411590 6538122 ~ 6540973 (-)
sprn2 LOC107578968,LOC107720715 other upstream 2501893 6628425 ~ 6631188 (-)
G75454 LOC107552069,LOC107678002,LOC107586137,LOC107687386,LOC107742371,LOC108437806 other upstream 3050792 7177324 ~ 7180821 (-)
LOC122352929 LOC107675999,LOC107677996,LOC107552059,LOC107720693 other upstream 3397662 7524194 ~ 7528558 (-)

Expression


Co-expression Network