reep5 (reep5,LOC107740782,LOC107715872,LOC107098485)


Basic Information

Item Value
gene id reep5
gene name reep5,LOC107740782,LOC107715872,LOC107098485
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 4126893 ~ 4131432 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250430.1
TTCGTGACGTCACACCCTCAGCGTGTCAGCGCGAGCTGAGGAGTAGAGCTGCTGttcatatcatttttatttcatatcgCAATAAATCCATCACCAATCCAGACACATCATGGCGCACGGGCTGAAAGAACGCTTCGATAAGTTTCTTTACGAGAAAAATTTGATGACGGAAGTGCTGGCGAAGATCGAGGCGAGGACCGGAGTAAACAGGTCCTACATCGCGTATGcTGTCATCGCGTTCATTGCGGTTTATCTGGTGATCGGATACGGCGCTTCTCTGCTCTGTAATCTAATCGGATTCGTCTATCCTGCGTACATATCAATCAAAGCCATTGAGAGCGCGACCAAAGACGACGACACCAAATGGCTGACCTACTGGGTGGTTTACGGCGTCTTCAGCATCGCGGAGTTCTTCGCTGATATTTTCCTCTCCTGGTTCCCTTTCTATTTTCTGGGAAAGtgcgcTTTCTTGGTTTGGTGCATGGCTCCCACTCCATCAAACGGCTCCGTTCTGATCTACACGAGAATCATCCGGCCCTTCTTCCTAAAGAACGAAGCCAAGATCGACAATGTGATGAAAGACATCACGGATAAAGCGTCAGAGGCGGCAGACAAGTTTAAAGATGAAGCCAAAAAAGCCACTGCCAACCTGATATTCGAGGAGAAAAAAACCTACTAAAATCCACAGCCATTTCAACTACATCCTGTCCTCCAGGATGACTCTTGCCTGAATAAATGTTGCCTTTCTATGCTTATTTTTCAAACTGGAAGTGGGCCGGTTACTGTTACTCCTTTTGCCCGTGCCCGTCTTTGAACTTGTGGCAGCCATATTAGATTACATGACAGACAAGTCACCATAGTTGTGTTTAAGCGGGTAAGACGTAGATCACGTTACAAGATATCCAGTGACGCTCACCCTGCGACGCTTCAGTGCAACTTCCCTTTCTTTCCTAAAAACTTCGTTAGCCTTGGCTTGTATTATAAGgtcataaaatacttttatcttGCACCTTAGGTCATTTAGCATACGCATTTTAAGATCTATTTATGTGCGACGAGGTTTGTGTTTGTAGGAATGTCTGTTCTGATCACATCAGTGAAACTGTAAGCATACAAAtcatgcatttgaaataaaatattaaatgattggAA

Function

symbol description
reep5 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including gonad; hatching gland; nervous system; polster; and trigeminal placode. Orthologous to human REEP5 (receptor accessory protein 5).

NR:

description
receptor expression-enhancing protein 5

GO: NA

KEGG:

id description
K17279 REEP5_6; receptor expression-enhancing protein 5/6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250430.1 True 1152 mRNA 0.45 5 4126893 4131432

Neighbor

gene id symbol gene type direction distance location
zgc:114200 zgc:114200,aph1a,LOC107572194,LOC107737132,LOC107670051,LOC107572192,LOC108427283 coding upstream 22106 4098046 ~ 4104787 (+)
tpm2 tpm2,LOC107670037,LOC107737084,LOC108276716,LOC108427282,LOC103044350,LOC108242564,LOC107572193,LOC107715874,LOC100710292,LOC106571564 coding upstream 29990 4081583 ~ 4096903 (+)
hmgcs1 hmgcs1,LOC107715876,LOC107737058 coding upstream 117523 4001799 ~ 4009370 (+)
map3k1 map3k1,LOC107558252,LOC107670047,LOC107715839 coding upstream 126955 3960041 ~ 3999938 (+)
syk syk,LOC107715877,LOC107736968 coding upstream 191056 3912265 ~ 3935837 (+)
ddx4 LOC107665473,LOC107715859,LOC107740783,LOC107670045 coding downstream 78207 4209639 ~ 4229765 (+)
slc38a9 slc38a9,LOC107564110,LOC107670042,LOC107740785,LOC107715861,LOC107566906,LOC107665474 coding downstream 100238 4231670 ~ 4241404 (+)
psd3l LOC107564111,LOC107715858,LOC107665472,LOC107740791,LOC107681482,LOC108427269 coding downstream 127088 4258520 ~ 4336441 (+)
fut10 fut10,LOC107681479,LOC107564112,LOC107740796 coding downstream 213781 4345213 ~ 4349700 (+)
LOC122353166 tex15,LOC107715856 coding downstream 735282 4866714 ~ 4887569 (+)
G74667 NA non-coding upstream 4235 4120864 ~ 4122658 (+)
G74626 NA non-coding upstream 233873 3891891 ~ 3893020 (+)
G74596 LOC107715844 non-coding upstream 267941 3854316 ~ 3858952 (+)
G74589 NA non-coding upstream 282381 3788757 ~ 3844512 (+)
G74585 NA non-coding upstream 358241 3768201 ~ 3768652 (+)
G74680 NA non-coding downstream 20026 4151458 ~ 4153279 (+)
G74681 zgc:194281,cunh5orf30,LOC107665462,LOC107740794,LOC107670048,LOC107564120,LOC107715868 non-coding downstream 23615 4155047 ~ 4160317 (+)
G74659 NA non-coding downstream 33526 4164958 ~ 4176118 (+)
G74686 NA non-coding downstream 66100 4197532 ~ 4201390 (+)
G74689 sh2d4a,LOC107740790,LOC107564121,LOC107715862,LOC107665475 non-coding downstream 113766 4245198 ~ 4249108 (+)
LOC122352388 tln1,LOC107715875,LOC107670039,LOC107568645,LOC107702558,LOC107737170 other upstream 6446 4013034 ~ 4120447 (+)
cdc42se2 cdc42se2 other upstream 432297 3669003 ~ 3694596 (+)
zgc:113274 LOC107715885,LOC107702590,LOC107720383,LOC107560406 other upstream 458887 3663912 ~ 3668006 (+)
enoph1 enoph1,LOC107702573,LOC107715850,LOC107679042,LOC107731803 other upstream 509377 3588244 ~ 3617516 (+)
LOC122352783 tln1,LOC107715875,LOC107670039,LOC107568645,LOC107702558 other downstream 349835 4481267 ~ 4529002 (+)
LOC122352404 LOC107670527,LOC107567246,LOC107587997,LOC107757377,LOC107711240,LOC107672489 other downstream 985434 5116866 ~ 5123373 (+)
LOC122352567 ywhah,LOC107562560,LOC107744159,LOC107713377,LOC107555530,LOC107688000 other downstream 1106847 5238279 ~ 5250137 (+)
G74965 NA other downstream 1125406 5256838 ~ 5258823 (+)
ccl19b LOC107744181,LOC107677997,LOC107567444,LOC107555521,LOC107713300,LOC107688602,LOC107713257 other downstream 1367215 5498647 ~ 5500388 (+)

Expression


Co-expression Network