rab11fip1b (LOC107758672,LOC107689050,LOC107746209,LOC107583401)


Basic Information

Item Value
gene id rab11fip1b
gene name LOC107758672,LOC107689050,LOC107746209,LOC107583401
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 15994912 ~ 16009528 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250432.1
GGGATTGTGGGCGTGGCTTTCGAGTGACGCTCACTTGTTGCTTCATTGGATTAGGTGAAACTTTTCCAGCGAAACGTTAACGGACCTTTGACACGTTGAAACTTCTCTCCGGGCAGGACACCTCGCGCGTCCTGCTGACTTTTCGCTCCCAGCTGAGACGGGTTGGGGCTTTCACAGAAATGTCACTGGCGGAGCAAAGCCAGCAGTGGTTTCCCACCAGCGTCCAGGTAACGGTGCTCCAGGCGAGGGGTTTGCGGAGCAAGGGGAAGAATGGCACCAACGACGCGTACGCCGTCATGCAGGTGGCCAAGGATAAGTTCTCCACCTCGGTGGCGGAGAAGAGCGTCGCGCCGGTGTGGAAAGAGGAGGCCGCGTTCGACCTGCCGCTCTTTCACCCCAGTAACGCGGAGCGCTGCACCCTACAGGTGTCTGTGATGCACCGGGCTTTGGTGGGACCCGATAAAATGCTCGGACAGGCGACCATCAACCTCCTGGAACTCCAAGACAATAAAACCCGTAACAAAACCGAatggtTCAAGTTGATGGGAAAGACGGGAAAGGCTGACAAAGACAGGGGAGAGGTGCTCCTAGACATTCAGTTCATGAAGAACAACATGACGGCCAGCATGTATGACCTCTCTGGGCAGGACAAGTCACGCTCACGGCTTGGGAAGATCAAGGATAAGCtgaaagggaaaaagaaagatgGGATGTCGGATTCTGCTTCCGCCATTGTGCCTTCAGTCGGCCAGGTATTGACTGACAGCGAGGGAGAAGAAGAAACTGACACCACAGCCGGAGCCAAAAAGAAGAATAAACTCAAGTCCCTCTTCGCACCCAAGCCGGGTTTGCACCGTAACATTTCCCAGTCCATGTCCACACTTGCCACCCTGCCTGAAAAAGATTCGGCCATCAGCCTGAGCAGATCGTCTGGCCTAAATATAGAGTCTCCTGAAGgcaaaaagaaattcaaatttCTGAAGCACAAGCGGACTGGAAGCTCTGACAGCAAGGTTTCCCAGGGTACTGGGTCTCTTGGACCGGGCATGGTGCAGAACAACTTGTGCATCAACGGCAGTCACGTCTACACAGAAGAACCAGAGACCAGAGGATCCAGGGCTGGTTCCACCTTCAGCCTGAACAGCTCTGGCCACGGATCCATGGAGGACTTGCGCAGAGGTCATGACCGGAAAACCTCCAGCACCTCAATGGACTCCTCGGACCAGACTCAGGAGAATGCAGTGGAGGAGATGCGCAGAAAACAAGAGGAACAGAggaaacaggaagaggaagtcagaaaaagaatagaggaagaaaaaagacaggctgaagaggaggagaggaaattgttagaaagagaggaagagaagagaaagcTACAGAAACTGGAAGAGGAAAGGAAAAGGATTGAGAGAGAGGAATTAAGAAAGAGGATAGAGAAGGAAGAAGAGCAAAAACGAATTGAAAGAGAAgaggaaattaaaaaagagagagaagaggagaggaaaaggatggagaaggaggaggaaagaaagagagaagaggagaggaaacGGATGGAAAGGGAGGAGGAAAGAAAGAGGATAGAGAGGGAAGAGGAAGGGAAACggatggagagagaggaagaaagaaagagggaagaGGAGAGGAAACGGATGGAAAGGGAGGAGGAAAGAAAGAGGATAGAGAGGGAAGAGGAGAGAAAACggatggagagagaggaagagaagaggaAGCTAGAGAAAcaggaagaaagaagaagaattgaggaagaggaaagaaaaagaattgagCAGGAGGAAATTATCAGAATAAAGAAAGAACAGGAACGAGTTAGACAGGAAGAAGATAGAAGGAAAGCTGAGGAGGAGAGGATCGAAgaggagaaaaggaaaagaatggaggaagaggaaaaggCTAGGAAGGAAGAAGATAAACTAAGGAGAAttgaggaagaggagagaaCGAGGCTTGAGAAAGTAAAGttgcagaaagaagaagagacaAGACAGTTGGAGATGGAAAGAAAACGGGCTAAAGAAGAGGAAAGACTActcagagaaaaagaaaagatggaagcagaggagaagaggaaaaggaaagaggaagaagagaaaaaactgTCTGAGGAGATGGAAAGAAAAGAGCAAGTAAGGGtgcaaaaggaaaaagagaagtTGGAGCTTGCGAACAAGAGAATGGAAGAACGGATGAAAGTGGAGCAGGCGAGAAGAAAggctgaggaagaggaagagaagagaaagcTGAAGGAGAAAGCAGACCAGGAGAGAATCAggcaagagaaagaagaaatagagggacagaagaaagaaatagaaCACCGACCTGAGGTGAAACCCAGGAGTGCTCGACTGAATACAAGTAAAAAAGCATTTGACGAGATAAATTCGGACAACATCCTATCCACCAATCCCTTTGAAGACCCTCTCTTATTCGACGAGAGCTCCACCAATCCCTTCGAGCAACCTACTGTTTCCCAACCTGAAGCCCTCAGTCGGTCCAGTAAAGTCTCCGCAGTCAAGCCAAGTTCTTCTGTTTCTGGAATCTTCTTTTCACAAGCATCTGTGCCAAACACCAACCCGTTCTTAAATGACTCTGATGTTCATGGCGAAAACACTGAGAAAGGTGTCCATCTTGAAGACACTGCAGAAAGGTCAGAGAAGAAGCGGCGTGCCCCAATGCCTCCCCAGAACAAGACGCAGAAGGGAAAACCAAATGTTCCTCCAAAAGCACCAGCAATTCCTGGAGCCACACAAGCTTTTACATCTAGAGCATCTGAGGATGGAGGAGACTCTGATTCCTATAGTTTACGACGGGACAAACGTCCTGCACCTTTACCACCAAAGAACAAGcaagaaatgcaaaacaaacatgcagacCAATCTGGCATTCTTCTTCATACGGGAGAATGGGGAACTACTAGTTTCCAGGAAACAGACCAGACAAACAATGTGTGCCCTGTTTTGCAAGATGAGTCTGATGGAGCCAATTTTATGAACGCCAGTTTATCTCATCTTATCCAGTATCATGCCAGTTTCAGACAAGAAACGAATCCTTTTATATCTACAGAGGTCAAAACAACTAAACACAACAAGGGTCCAGCTCCAAAGCCTTCATTACAGTTAAAATCTTGCAAGACGTCTGCATCTGAAACTGAAACGATCAGCAAAGCAATTAGTAATGTGCTTTTGACTGAACATGAAACCAGTGCTGCCTCAAACTCTTGCGTTGATCAAGTAGATGAGTTGATTGACAAGCATGATGTACTCCCTGCATCTTCTACCAAACCCAAGCACTCTGATGACCTGTCCTCAAGAGTAGGTAAACACAAGCATCTACCAGAAAAGTCTGACCAAAACTCTCTTGGAGAAGACGTACCTTCAGTGTCTGATCCAGTCCTTGGAAAGGTTCTCTGCAGTGTGATTGATCCTAAGAATGCTGAAAACGTCCTGCTAGAAAGTGGATTTTCCAAAAAGAAGAGTCCTGCCCCATTGCCTCCTGCCAAATCAGCATCCAGACAGCAACCAGAAGCTGCACTGATCTCAACCACTCAAGCCAAGTCATTAAGTGTTAATAATGACAATTCAACTTCACGTTTTACCCAATTCCTGGTGAACTCCTCTTCAACCTCCAGTCAAGCTCTCACTCCATTGAAACAGGAAGCAGGTCATGGGTCAGGACACCGGTCTCTCCCACAGGCCAGAGTGTCACCTATTGATGTTCAGCCCATTGCTGGGCAGAAAAATGGCAGTGACTGTGAGAAAACAGGTGATCCTGCCTTCAAATCCTGCAGgccCCATGCAGTGAAACCCCTGAGCACTGCTGACAAGCAGCCAGACTTCAGAGAGACCCAAGAAGCGTCTCGATCTGctaaaatgatgacagatgacGTGCAAGTTAAGATGAAGGCCCCAGAGGCTAAAGGGACGGGGCCGTACTCCCAACTCACCCATGAAGAGCTCATTAACTTGTTGGAAAAGCAGAAGCAGCAGCTTTCTCAGAAGGACGCTAAGATTGGGGAACTGGAGCAGTATATAGACAATCTTCTGGTCCGTGTCATGGAGGAGAACCCCAACATTTTAATGTCCTTTAACATGATGAAGAAGTCCATTTGAGCACTTTTTCTAGCAgggttttgtatttaatgtgcaCTTGGGTGATTGACAGTACATGGTTGTGGGTGAAGACAGGTTTTCACTACATACACTAGCGAGCCAAAGATCAGGGTGTACACTTAACGTCTTGGCCTGAACAGTGACGAAATGAATGTTCTTGCTTCAACCATGTGACTGACTTATTCTTGtacatgttaaaaagaaaagaaaagaaagtattttCTTCAAAGGTTTATACTGTATGCTTTTTCCATTTGAATTGCTAATATTCTTCGAATAGtatcatataaattaaatatatatcatatatcaaaGCATTCAATGGATACAACATATACTttcaatgttttctataaatgACAAAGCTGTATGATATTTTGTAGGCAGATCTCTGTATTTCAAAGAAGCACTTTaagttcatctgtaaataatgaACATGTGATCATTTGTACTTGCTTAGCGAGCGGCTTTGTTATTCCCTGCTTTTGAAATAAAGAACGTCACAGGTGTGGTGCTTTGTAAAGGGCAGCGTCACATGATTCCGTCTGTGTGCACTTTCAACTATACAGATTAAGTTTTATGTgattattattctaaaaaaatacaattaataacaaTTGAGGGAATATCAGATGTTGCAATTGCCCATAACAAATATGGAGGATTGAGAAATGCTTGAAATTGACTATGGTGTCCATAATTTCTTATAACTAAGCCTTCTCTgttctttataataaaattataaaatatgtggAA
>XM_043250433.1
CGTGGCTTTCGAGTGACGCTCACTTGTTGCTTCATTGGATTAGGTGAAACTTTTCCAGCGAAACGTTAACGGACCTTTGACACGTTGAAACTTCTCTCCGGGCAGGACACCTCGCGCGTCCTGCTGACTTTTCGCTCCCAGCTGAGACGGGTTGGGGCTTTCACAGAAATGTCACTGGCGGAGCAAAGCCAGCAGTGGTTTCCCACCAGCGTCCAGGTAACGGTGCTCCAGGCGAGGGGTTTGCGGAGCAAGGGGAAGAATGGCACCAACGACGCGTACGCCGTCATGCAGGTGGCCAAGGATAAGTTCTCCACCTCGGTGGCGGAGAAGAGCGTCGCGCCGGTGTGGAAAGAGGAGGCCGCGTTCGACCTGCCGCTCTTTCACCCCAGTAACGCGGAGCGCTGCACCCTACAGGTGTCTGTGATGCACCGGGCTTTGGTGGGACCCGATAAAATGCTCGGACAGGCGACCATCAACCTCCTGGAACTCCAAGACAATAAAACCCGTAACAAAACCGAatggtTCAAGTTGATGGGAAAGACGGGAAAGGCTGACAAAGACAGGGGAGAGGTGCTCCTAGACATTCAGTTCATGAAGAACAACATGACGGCCAGCATGTATGACCTCTCTGGGCAGGACAAGTCACGCTCACGGCTTGGGAAGATCAAGGATAAGCtgaaagggaaaaagaaagatgGGATGTCGGATTCTGCTTCCGCCATTGTGCCTTCAGTCGGCCAGGTATTGACTGACAGCGAGGGAGAAGAAGAAACTGACACCACAGCCGGAGCCAAAAAGAAGAATAAACTCAAGTCCCTCTTCGCACCCAAGCCGGGTTTGCACCGTAACATTTCCCAGTCCATGTCCACACTTGCCACCCTGCCTGAAAAAGATTCGGCCATCAGCCTGAGCAGATCGTCTGGCCTAAATATAGAGTCTCCTGAAGgcaaaaagaaattcaaatttCTGAAGCACAAGCGGACTGGAAGCTCTGACAGCAAGGTTTCCCAGGGTACTGGGTCTCTTGGACCGGGCATGGTGCAGAACAACTTGTGCATCAACGGCAGTCACGTCTACACAGAAGAACCAGAGACCAGAGGATCCAGGGCTGGTTCCACCTTCAGCCTGAACAGCTCTGGCCACGGATCCATGGAGGACTTGCGCAGAGGTCATGACCGGAAAACCTCCAGCACCTCAATGGACTCCTCGGACCAGACTCAGGAGAATGCAGTGGAGGAGATGCGCAGAAAACAAGAGGAACAGAggaaacaggaagaggaagtcagaaaaagaatagaggaagaaaaaagacaggctgaagaggaggagaggaaattgttagaaagagaggaagagaagagaaagcTACAGAAACTGGAAGAGGAAAGGAAAAGGATTGAGAGAGAGGAATTAAGAAAGAGGATAGAGAAGGAAGAAGAGCAAAAACGAATTGAAAGAGAAgaggaaattaaaaaagagagagaagaggagaggaaaaggatggagaaggaggaggaaagaaagagagaagaggagaggaaacGGATGGAAAGGGAGGAGGAAAGAAAGAGGATAGAGAGGGAAGAGGAAGGGAAACggatggagagagaggaagaaagaaagagggaagaGGAGAGGAAACGGATGGAAAGGGAGGAGGAAAGAAAGAGGATAGAGAGGGAAGAGGAGAGAAAACggatggagagagaggaagagaagaggaAGCTAGAGAAAcaggaagaaagaagaagaattgaggaagaggaaagaaaaagaattgagCAGGAGGAAATTATCAGAATAAAGAAAGAACAGGAACGAGTTAGACAGGAAGAAGATAGAAGGAAAGCTGAGGAGGAGAGGATCGAAgaggagaaaaggaaaagaatggaggaagaggaaaaggCTAGGAAGGAAGAAGATAAACTAAGGAGAAttgaggaagaggagagaaCGAGGCTTGAGAAAGTAAAGttgcagaaagaagaagagacaAGACAGTTGGAGATGGAAAGAAAACGGGCTAAAGAAGAGGAAAGACTActcagagaaaaagaaaagatggaagcagaggagaagaggaaaaggaaagaggaagaagagaaaaaactgTCTGAGGAGATGGAAAGAAAAGAGCAAGTAAGGGtgcaaaaggaaaaagagaagtTGGAGCTTGCGAACAAGAGAATGGAAGAACGGATGAAAGTGGAGCAGGCGAGAAGAAAggctgaggaagaggaagagaagagaaagcTGAAGGAGAAAGCAGACCAGGAGAGAATCAggcaagagaaagaagaaatagagggacagaagaaagaaatagaaCACCGACCTGAGGTGAAACCCAGGAGTGCTCGACTGAATACAAGTAAAAAAGCATTTGACGAGATAAATTCGGACAACATCCTATCCACCAATCCCTTTGAAGACCCTCTCTTATTCGACGAGAGCTCCACCAATCCCTTCGAGCAACCTACTGTTTCCCAACCTGAAGCCCTCAGTCGGTCCAGTAAAGTCTCCGCAGTCAAGCCAAGgccCCATGCAGTGAAACCCCTGAGCACTGCTGACAAGCAGCCAGACTTCAGAGAGACCCAAGAAGCGTCTCGATCTGctaaaatgatgacagatgacGTGCAAGTTAAGATGAAGGCCCCAGAGGCTAAAGGGACGGGGCCGTACTCCCAACTCACCCATGAAGAGCTCATTAACTTGTTGGAAAAGCAGAAGCAGCAGCTTTCTCAGAAGGACGCTAAGATTGGGGAACTGGAGCAGTATATAGACAATCTTCTGGTCCGTGTCATGGAGGAGAACCCCAACATTTTAATGTCCTTTAACATGATGAAGAAGTCCATTTGAGCACTTTTTCTAGCAgggttttgtatttaatgtgcaCTTGGGTGATTGACAGTACATGGTTGTGGGTGAAGACAGGTTTTCACTACATACACTAGCGAGCCAAAGATCAGGGTGTACACTTAACGTCTTGGCCTGAACAGTGACGAAATGAATGTTCTTGCTTCAACCATGTGACTGACTTATTCTTGtacatgttaaaaagaaaagaaaagaaagtattttCTTCAAAGGTTTATACTGTATGCTTTTTCCATTTGAATTGCTAATATTCTTCGAATAGtatcatataaattaaatatatatcatatatcaaaGCATTCAATGGATACAACATATACTttcaatgttttctataaatgACAAAGCTGTATGATATTTTGTAGGCAGATCTCTGTATTTCAAAGAAGCACTTTaagttcatctgtaaataatgaACATGTGATCATTTGTACTTGCTTAGCGAGCGGCTTTGTTATTCCCTGCTTTTGAAATAAAGAACGTCACAGGTGTGGTGCTTTGTAAAGGGCAGCGTCACATGATTCCGTCTGTGTGCACTTTCAACTATACAGATTAAGTTTTATGTgattattattctaaaaaaatacaattaataacaaTTGAGGGAATATCAGATGTTGCAATTGCCCATAACAAATATGGAGGATTGAGAAATGCTTGAAATTGACTATGGTGTCCATAATTTCTTATAACTAAGCCTTCTCTgttctttataataaaattataaaatatgtggAA

Function

NR:

description
calponin homology domain-containing protein DDB_G0272472-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250432.1 True 4892 mRNA 0.45 6 15994912 16009528
XM_043250433.1 False 3615 mRNA 0.45 5 15994912 16009517

Neighbor

gene id symbol gene type direction distance location
brf2 LOC107746211,LOC107658585,LOC107758611,LOC107558130,LOC107689884,LOC107682650 coding downstream 940 15989593 ~ 15993972 (-)
aak1b aak1b,LOC107583399,LOC107746214,LOC107658583,LOC107689018 coding downstream 36467 15931955 ~ 15958445 (-)
bmp1b LOC107688986,LOC107758677,LOC107583398,LOC107746216,LOC107658580,LOC107558131 coding downstream 104422 15872490 ~ 15890490 (-)
pcna pcna,LOC107658578,LOC107583397,LOC107688976 coding downstream 130382 15862177 ~ 15864530 (-)
LOC122352473 pim3,LOC107732271 coding downstream 144920 15847789 ~ 15849992 (-)
gpat4 gpat4,LOC107746208,LOC107758670,LOC107689060,LOC107558124,LOC107658586,LOC107583403 coding upstream 11549 16021077 ~ 16029140 (-)
ggt1b ggt1b,LOC107758666,LOC107689091,LOC107602052,LOC107658554 coding upstream 72442 16081970 ~ 16095356 (-)
LOC122352490 kdm2b,LOC107602054,LOC107689109,LOC107746202,LOC107558119,LOC107658591 coding upstream 136908 16146436 ~ 16169814 (-)
rhof rhof,LOC107689190,LOC107758662,LOC107577248,LOC107658595,LOC107558117,LOC107746201 coding upstream 174326 16183854 ~ 16187960 (-)
car15 car15,LOC107602060,LOC107758609,LOC107689182,LOC107558080 coding upstream 200220 16209748 ~ 16213685 (-)
G77820 NA non-coding downstream 7425 15935553 ~ 15987487 (-)
G77821 NA non-coding downstream 63261 15931346 ~ 15931651 (-)
G77831 NA non-coding downstream 66595 15928092 ~ 15928317 (-)
G77830 NA non-coding downstream 67414 15927186 ~ 15927498 (-)
G77827 NA non-coding downstream 73552 15920921 ~ 15921360 (-)
LOC122353141 NA non-coding upstream 89467 16098995 ~ 16101344 (-)
trnag-gcc_65 NA non-coding upstream 109258 16118786 ~ 16118856 (-)
trnag-gcc_66 NA non-coding upstream 109424 16118952 ~ 16119022 (-)
G77936 NA non-coding upstream 169072 16178600 ~ 16179895 (-)
LOC122352611 NA non-coding upstream 180006 16189534 ~ 16193540 (-)
npffr1l1 npffr1l1,LOC107658551,LOC105907118 other downstream 97680 15892644 ~ 15897232 (-)
G77702 NA other downstream 636680 15357685 ~ 15358232 (-)
LOC122352744 LOC107556605,LOC107709039,LOC107722845,LOC107690595,LOC107555077 other downstream 705240 15229969 ~ 15289672 (-)
G77671 NA other downstream 887160 15107137 ~ 15107752 (-)
vwa3a LOC107675622,LOC107552102,LOC107726804,LOC107717475 other downstream 1405013 14568330 ~ 14589899 (-)
LOC122352931 LOC107758671,LOC107689893 other upstream 7143 16016671 ~ 16021774 (-)
cabp1b LOC107583405,LOC107746207,LOC107658587,LOC107758669,LOC107689072,LOC108440152,LOC103029522,LOC107373232,LOC102297829,LOC108232745,LOC103473718,LOC105890914,LOC107558082,LOC102200114 other upstream 20999 16030527 ~ 16057307 (-)
morn3 orai1b,morn3,LOC107746203,LOC107602056,LOC107689140,LOC107758661,LOC108425168,LOC107758660,LOC107683200 other upstream 162950 16172478 ~ 16177111 (-)
LOC122352830 LOC107689301,LOC107718705,LOC107602072,LOC107658608,LOC107658557,LOC107589035,LOC105888796,LOC106563065 other upstream 406380 16415908 ~ 16490354 (-)
zgc:100918 zgc:100918,LOC107588983,LOC107689338,LOC107602073,LOC105902761,LOC105015198,LOC106563067,LOC103037223 other upstream 422999 16432527 ~ 16437594 (-)

Expression


Co-expression Network