pstpip2 (pstpip2,LOC107744171,LOC107685173)


Basic Information

Item Value
gene id pstpip2
gene name pstpip2,LOC107744171,LOC107685173
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 507604 ~ 515636 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250440.1
CGCGATCCTCGCGTCTCTCTGAAAGCGTTATTACCAGCAGATACGGAACTTCACTTTCTGAGAGAGAACAGCATCCGACGCGATGAGAGAACTACGTTTCAAGGATAATTTTTGGAACACCGATATCATCAGCACAGCTGGATATGACAGCATCATCCAGCACCTGAATGATGGCAAGAGGACATGCAAAGAAATCGAGGATTTCATGAAGGCCAGAGCCGCGATAGAAGAAAAATATGCCAAGGAGCTGCTGGGTTTGTCCAAGAAAGTGTGTGGACACAGCGAGATGAAcacCCTGAAACGATCGCTTGATGTTTTCAAATTAcAAACAGAAAATGTCAGTTTGGCCCATCTGCATTTGGCCCACACCATGAGGGAGGAAGCTAAGAAACTAGAAGacttcagagagaaacagaaagaggcCCGGAAGAAGgtagaACAGCATATGGATGTTCTTCATAAACAGAAGGCGGCACAATGTAAGAAAACGGCTGAGgCGAAGAAGACTTATGAGCAAAAGTGTCGAGATAAAGAGGAAGCAGAACAgaacatgaacagaaatgcCACCACCAGCAGTTCCAAGCAGCAAGAAAAGCTGTATGCCAAAACACAGCAAGCCAAGCAGACGGCGGAGGAAGCTGACAGGATCTACAGTCAGAACGTGTCCTTGCTGGGGAAGCTGAGAGACGAGTGGCTGAACGAGCATGTCAAAGCCTGCGAGTTCTTTGAGAGACAGGAAGTGGAGAGGATCAGCACCTTGAGGAGCGTGGTGTGGACTCATCTCAATCATCTCTCGCAGCAGTGTGTCACCAGCGATGAGCTCTACGAGGAAGTGAGGAAGTCACTGGAGCAATGTAACATTCAAGAAGACCTCGAGCATTTTATCAACCTCAGAAGAACCGGAGACAATCCTCCAGCACCTGTTCCATACGAGAACTTCTACAATAATCAGAGATCAGCTCCCACTCGTTCCCTGCCCACAGCTGGCAGGAGAGCAGCAGCCCCTCCACCACCAACTGCAGAAAatgaTCATTTATACTCAACCGTAGCAGAACCAGGGTACAGCCTCATACGATACTAATAAGTTCGTGGCTCGGTAAGAATTTCAGCAGGAATGTAAACTTGTCGTGCAATTCACAAACAGTATGATATTAACGTTGGACCAAGTATTATACAgttaataatgttgtttatgAATACCTGGAATGCTCCCTTGAAGAAATGGTGTTCAAGTGattcattttcctctttttcagtCTTTGCAAGCCCTTTTGCTGCTCAGTAGGAATATGGTGAAGGCATTTTTGTTACAGTTGTATCAAGGGTTGAAAAACACATTAGTTAGCCTTTAATGCTGTAGCCAGCTTCCTCATACCATGTGGTGTGAAGCGGTTCCCTGTCTCTgtatgaacaaaaaacaaaacaaaaaaaacattgttaactTGCTAACCTAAAATCCGAGCAAGCAAACACAGTGAGCTTTGACACTTTTACAATCATAAAACGTCAAATCCTGAAGTTCTCACTACAACGATAACATCACCAATgttgtataatatttgtattttatttactgtaaaaaaggATGTACAATTCTGCACTACTAGTGGCATCAAATGGAATTGCTGTGGGTTTGAAAAGCTTTACTGGGTTCAACCAATAGGGTGAGTTTGGAGGCGGGGCTACATGTTTGGCCAATGGAAAACAGGAAAGGATctgttcttttgttatttttaaaattcagttttggtGTAGCTAGTGGTCCAGAAATGacacatttgatttttaaatcagctttttataaaggccaaaaatatataatttatttttattgtaaaattctACACACTGTCAATACAGAGTCCTGTATCACTGGATATGTTGCTTCAataaatatagtgtatatacgA
>XM_043250441.1
CGCGATCCTCGCGTCTCTCTGAAAGCGTTATTACCAGCAGATACGGAACTTCACTTTCTGAGAGAGAACAGCATCCGACGCGATGAGAGAACTACGTTTCAAGGATAATTTTTGGAACACCGATATCATCAGCACAGCTGGATATGACAGCATCATCCAGCACCTGAATGATGGCAAGAGGACATGCAAAGAAATCGAGGATTTCATGAAGGCCAGAGCCGCGATAGAAGAAAAATATGCCAAGGAGCTGCTGGGTTTGTCCAAGAAAGTGTGTGGACACAGCGAGATGAAcacCCTGAAACGATCGCTTGATGTTTTCAAATTAcAAACAGAAAATGTCAGTTTGGCCCATCTGCATTTGGCCCACACCATGAGGGAGGAAGCTAAGAAACTAGAAGacttcagagagaaacagaaagaggcCCGGAAGAAGgtagaACAGCATATGGATGTTCTTCATAAACAGAAGGCGGCACAATGTAAGAAAACGGCTGAGgCGAAGAAGACTTATGAGCAAAAGTGTCGAGATAAAGAGGAAGCAGAACAgaacatgaacagaaatgcCACCACCAGCAGTTCCAAGCAGCAAGAAAAGCTGTATGCCAAAACACAGCAAGCCAAGCAGACGGCGGAGGAAGCTGACAGGATCTACAGTCAGAACGTGTCCTTGCTGGGGAAGCTGAGAGACGAGTGGCTGAACGAGCATGTCAAAGCCTGCGAGTTCTTTGAGAGACAGGAAGTGGAGAGGATCAGCACCTTGAGGAGCGTGGTGTGGACTCATCTCAATCATCTCTCGCAGCAGTGTGTCACCAGCGATGAGCTCTACGAGGAAGTGAGGAAGTCACTGGAGCAATGTAACATTCAAGAAGACCTCGAGCATTTTATCAACCTCAGAAGAACCGGAGACAATCCTCCAGCACCTGTTCCATACGAGAACTTCTACAATAATCAGAGATCAGCTCCCACTCGTTCCCTGCCCACAGCTGGCAGGAGAGCAGCAGCCCCTCCACCACCAACTGCAGAAAatgaTCATTTATACTCAACCGTAGCAGAACCAGGGTACAGCCTCATACGATACTAATAAGTTCGTGGCTCGtCTTTGCAAGCCCTTTTGCTGCTCAGTAGGAATATGGTGAAGGCATTTTTGTTACAGTTGTATCAAGGGTTGAAAAACACATTAGTTAGCCTTTAATGCTGTAGCCAGCTTCCTCATACCATGTGGTGTGAAGCGGTTCCCTGTCTCTgtatgaacaaaaaacaaaacaaaaaaaacattgttaactTGCTAACCTAAAATCCGAGCAAGCAAACACAGTGAGCTTTGACACTTTTACAATCATAAAACGTCAAATCCTGAAGTTCTCACTACAACGATAACATCACCAATgttgtataatatttgtattttatttactgtaaaaaaggATGTACAATTCTGCACTACTAGTGGCATCAAATGGAATTGCTGTGGGTTTGAAAAGCTTTACTGGGTTCAACCAATAGGGTGAGTTTGGAGGCGGGGCTACATGTTTGGCCAATGGAAAACAGGAAAGGATctgttcttttgttatttttaaaattcagttttggtGTAGCTAGTGGTCCAGAAATGacacatttgatttttaaatcagctttttataaaggccaaaaatatataatttatttttattgtaaaattctACACACTGTCAATACAGAGTCCTGTATCACTGGATATGTTGCTTCAataaatatagtgtatatacgA

Function

symbol description
pstpip2 Predicted to enable actin binding activity. Predicted to act upstream of or within cell migration and cytoskeleton organization. Orthologous to human PSTPIP2 (proline-serine-threonine phosphatase interacting protein 2).

NR:

description
PREDICTED: proline-serine-threonine phosphatase-interacting protein 2 isoform X1

GO: NA

KEGG:

id description
K20124 PSTPIP2; proline-serine-threonine phosphatase interacting protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250440.1 True 1910 mRNA 0.43 14 507604 515636
XM_043250441.1 False 1750 mRNA 0.43 15 507604 515636

Neighbor

gene id symbol gene type direction distance location
sub1a sub1,LOC107686443,LOC107562553,LOC107685153,LOC107713349,LOC107571107,LOC107552599 coding upstream 1484 504360 ~ 506120 (+)
aldh7a1 aldh7a1 coding upstream 87150 412893 ~ 420454 (+)
LOC122353112 LOC107726979,LOC107669787,LOC568883,LOC107568003 coding upstream 270298 227167 ~ 237306 (+)
LOC122353215 NA coding upstream 413400 93311 ~ 94204 (+)
mtrex skiv2l2,LOC107744101,LOC107571110,LOC107713350,LOC107686493 coding downstream 20772 536408 ~ 564154 (+)
hvcn1 LOC107686438,LOC107744097,LOC107562590,LOC107685148,LOC107575472 coding downstream 98238 613874 ~ 616743 (+)
pptc7b pptc7b,LOC107744096,LOC107713343,LOC107685147,LOC106563180,LOC105909313 coding downstream 107636 623272 ~ 633992 (+)
tbc1d10ab tbc1d10a,LOC105895496,LOC106579927 coding downstream 122034 637670 ~ 649638 (+)
aplnrb aplnrb,LOC107713340,LOC107685146,LOC107686435,LOC107562592,LOC107744094 coding downstream 148315 663951 ~ 665777 (+)
G73560 NA non-coding upstream 78334 428856 ~ 429270 (+)
G73559 apbb1,LOC107750985,LOC107673752,LOC107565841 non-coding upstream 80089 424953 ~ 427515 (+)
G73519 NA non-coding upstream 110503 349033 ~ 397101 (+)
G73523 NA non-coding upstream 159697 347548 ~ 347907 (+)
G73465 NA non-coding upstream 215337 287869 ~ 292267 (+)
G73589 NA non-coding downstream 136908 652544 ~ 653003 (+)
G73588 NA non-coding downstream 137978 653614 ~ 673309 (+)
G73656 NA non-coding downstream 279699 795335 ~ 795689 (+)
G73710 NA non-coding downstream 289734 805370 ~ 805665 (+)
G73711 NA non-coding downstream 291982 807618 ~ 807846 (+)
c10h5orf63 LOC107715565,LOC107657471,LOC107576909 other upstream 108745 396440 ~ 398859 (+)
LOC122352377 fbn2,LOC107705843,LOC107575594,LOC107565844,LOC562634 other upstream 221364 242243 ~ 286240 (+)
pmaip1 NA other downstream 167470 683106 ~ 774374 (+)
isl1b NA other downstream 176488 692124 ~ 695923 (+)
fstb fstb,LOC107685190,LOC107713293,LOC107686430,LOC107744087,LOC107597631,LOC107595577 other downstream 280375 796011 ~ 801923 (+)
rbm18 rbm18,LOC107597621,LOC107595545,LOC107685132,LOC107686423 other downstream 418433 934069 ~ 945860 (+)
LOC122352734 LOC107744074,LOC107597614,LOC107686419,LOC107685127,LOC101884949,LOC107713324,LOC107595548 other downstream 562060 1077696 ~ 1084039 (+)

Expression


Co-expression Network