rhof (rhof,LOC107689190,LOC107758662,LOC107577248,LOC107658595,LOC107558117,LOC107746201)


Basic Information

Item Value
gene id rhof
gene name rhof,LOC107689190,LOC107758662,LOC107577248,LOC107658595,LOC107558117,LOC107746201
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 16183854 ~ 16187960 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250444.1
CCGCCTAGTGATGGAGCAGACCGTGTGCGGGCAGCCACAGGAAAGAGTCACACGCGTCTAACAGCCTCCGTTACAGTCGCACGCTCTGCTCTGCTGGGGTTCCCGAAAACAGTCACAtggtttgaaaagaaaaaaaaaaaaaggcaagaggaggaggaagccgAGACCGGATAGCAGCATGCTCACCTGGCAGAGCGTTAGTCTGCTCACCAATGAATTGACCTGACGCTTCTGTGCACTTGGGCACCTGTTGGAGGAACCGACCCGGCCGGTGCGGCCCGCGAGAGGACATGACACAGAACGGCTCTGTGGCCGGCAATGGCACTCAAACCGATTCTCTCAAAATTGTGATCGTCGGGGACGGGGGTTGTGGGAAAACGTCTCTGCTTATGGTGTACGCCAAAGGAGATTTCCCAGAGAAATATGCTCCGTCTGTGTTCGACAAATATGTCACCACTGTATCCTATGGAGGGAAAGACATTCAGCTGAATCTGTACGATACGGCAGGCCAGGAGGACTACGATCGCTTGAGGCCTCTGTCGTATCAAGAAGTAAACCTTGTTCTCATCTGCTACGATGTGACCAATCCGACGTCGTTCGACAATGTCACGATAAAGTGGTACCCAGAGGTTAGGCATTTTTGCCGTGACGTGCCCATTATCTTAATAGGGTGCAAGACAGACCTACGAAAAGACAAAGAGAAGATGAGGAAGCTTAAAGCTTTAGATCTGGCGCCCATCACCTACCTCCAGGGTGAACAAATACAGAAGCAAATGAACGCTGATATATACCTGGAGTGTTCGGCAAAATATAGAGAAAACGTAGAGGACATTTTCAGAGAGGCAACCAAGCGAGCGCTAGCGGCCCGGGCTAAAGCAAGACATCTCCGCAAGAAGAAGAAACGCTGCACCATTCTGTGACCACTGCCAGAAGAACACGCTTTTTCAAGTTTTGTATATATGAAATAGGATATTCTGTAAACACTTGGGAAACATCTGCAAAGCTTCTCAAAGTTGTTTAAGCTTTCTCGAAGGAATATTTTTCAGGACATGTGGTGTGCGTTTTCTCACAATCTGCCCACCAAGCAAGGCTTAACTGTCTGACAGAGGTCACCGGAGTGAGCGTGATAAGCCTGTAATGGTCCAAGCCACATCCTTCTGCTGGTGTTACTGATATGACTTGATGGAATTTGGTCCCCCATGATTGTGGATCCAATAGAAGATGGAAAAATTGCTGCTGATGTCTCAGTGATGACTGTTACGATCTGTGTTTGTAATAGTAACGCACAACTAACTGAAGTACCTGCCGCTGTGTTACACTGGgtgtgacatttttttgttgtgcaaTGCATGTCATCGACTTACACAATAGTTGCAGTTTTTAAACTCTGAGTTACAGTATTTTGCGAGCCTATAAAGctttctgaacaaaaaaaggTGGCCTATGGTGTACAAAAAAATCCTGGAGATTTGTGGAAATATGAGTTTATGTGTAGACCACCACCATTCGGAACCATTCAATGACTTTCTTTCAGTAAGGGGACGATTTGCTGCGTTTCTTAACTTCCCCAGATCTCACAGTGATGCCAGAAAGTGTTGATTAATTTGAAAACCATTACTGCACAAATAAACCCGTCATATTTTAAGATA

Function

symbol description
rhof Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including cytoskeleton organization; regulation of actin cytoskeleton organization; and regulation of cell shape. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and cytoskeleton. Is expressed in macrophage and yolk syncytial layer. Orthologous to human RHOF (ras homolog family member F, filopodia associated).

NR:

description
PREDICTED: rho-related GTP-binding protein RhoF

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07872 RHOF, RIF; Ras homolog gene family, member F

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250444.1 True 1649 mRNA 0.46 5 16183854 16187960

Neighbor

gene id symbol gene type direction distance location
LOC122352490 kdm2b,LOC107602054,LOC107689109,LOC107746202,LOC107558119,LOC107658591 coding downstream 14040 16146436 ~ 16169814 (-)
ggt1b ggt1b,LOC107758666,LOC107689091,LOC107602052,LOC107658554 coding downstream 88498 16081970 ~ 16095356 (-)
gpat4 gpat4,LOC107746208,LOC107758670,LOC107689060,LOC107558124,LOC107658586,LOC107583403 coding downstream 154714 16021077 ~ 16029140 (-)
rab11fip1b LOC107758672,LOC107689050,LOC107746209,LOC107583401 coding downstream 174326 15994912 ~ 16009528 (-)
brf2 LOC107746211,LOC107658585,LOC107758611,LOC107558130,LOC107689884,LOC107682650 coding downstream 189882 15989593 ~ 15993972 (-)
car15 car15,LOC107602060,LOC107758609,LOC107689182,LOC107558080 coding upstream 21788 16209748 ~ 16213685 (-)
dgcr2 dgcr2,LOC107689205,LOC107602057,LOC107746195,LOC107558114,LOC107658593,LOC107758577 coding upstream 29066 16217026 ~ 16227175 (-)
ess2 dgcr14,LOC107758656,LOC107746196 coding upstream 39359 16227319 ~ 16232580 (-)
stambpa stambpa,LOC107758608,LOC107658597,LOC107558102,LOC107746197,LOC107689905,LOC107602045 coding upstream 44786 16232746 ~ 16239069 (-)
dusp11 dusp11,LOC107602062,LOC107758654,LOC107689237,LOC107558079,LOC107565330 coding upstream 52216 16240176 ~ 16244033 (-)
G77936 NA non-coding downstream 3959 16178600 ~ 16179895 (-)
trnag-gcc_66 NA non-coding downstream 64832 16118952 ~ 16119022 (-)
trnag-gcc_65 NA non-coding downstream 64998 16118786 ~ 16118856 (-)
LOC122353141 NA non-coding downstream 82510 16098995 ~ 16101344 (-)
G77820 NA non-coding downstream 196367 15935553 ~ 15987487 (-)
LOC122352611 NA non-coding upstream 1574 16189534 ~ 16193540 (-)
G77947 LOC107689250,LOC107689777,LOC107602036,LOC107758655,LOC107602063,LOC107758576 non-coding upstream 57695 16245655 ~ 16252193 (-)
LOC122352562 NA non-coding upstream 58693 16246653 ~ 16249749 (-)
G77979 NA non-coding upstream 163437 16351397 ~ 16353048 (-)
G77980 NA non-coding upstream 186260 16374220 ~ 16379551 (-)
morn3 orai1b,morn3,LOC107746203,LOC107602056,LOC107689140,LOC107758661,LOC108425168,LOC107758660,LOC107683200 other downstream 6743 16172478 ~ 16177111 (-)
cabp1b LOC107583405,LOC107746207,LOC107658587,LOC107758669,LOC107689072,LOC108440152,LOC103029522,LOC107373232,LOC102297829,LOC108232745,LOC103473718,LOC105890914,LOC107558082,LOC102200114 other downstream 126547 16030527 ~ 16057307 (-)
LOC122352931 LOC107758671,LOC107689893 other downstream 162080 16016671 ~ 16021774 (-)
npffr1l1 npffr1l1,LOC107658551,LOC105907118 other downstream 286622 15892644 ~ 15897232 (-)
G77702 NA other downstream 825622 15357685 ~ 15358232 (-)
LOC122352830 LOC107689301,LOC107718705,LOC107602072,LOC107658608,LOC107658557,LOC107589035,LOC105888796,LOC106563065 other upstream 227948 16415908 ~ 16490354 (-)
zgc:100918 zgc:100918,LOC107588983,LOC107689338,LOC107602073,LOC105902761,LOC105015198,LOC106563067,LOC103037223 other upstream 244567 16432527 ~ 16437594 (-)

Expression


Co-expression Network