trappc13 (trappc13,LOC107667267,LOC107742971,LOC107705057,LOC107726564)


Basic Information

Item Value
gene id trappc13
gene name trappc13,LOC107667267,LOC107742971,LOC107705057,LOC107726564
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 2063385 ~ 2072915 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250531.1
GCGGTTTGTGCCTCTGTACTCGCCGTAAGCAGCTGATATGCAGGTCAAAGGGCAGTCCGGTGCAGCAGACAAGATGGATGTCAACCAGGCAAAACAAGAGCATCTGCTCGCTTTAAAAGTGATGCGGCTGACCAAACCTACACTTTTTACAAACATGCCGGTGACGTGCGAGGACCGAGATCTTCCAGGTGATTTGTTTATACGACTCATGAAAGACGACCCATCGACCGTAAAGGGGGCAGAAACACTAATCCTCGGGGAAATGCTCACTCTGCCACAGAACTTTGgaaatattttccTTGGCGAGACCTTCTCCAGTTACATCAGCGTGCACAACGACAGCAATCAAGTGGTCAAGGATATTCTTGTAAAGGCGGACCTGCAGACGAGCTCCCAGAGGTTAAATTTATCGGCTTCAAACTCGGCCGTTTCGGAGCTCAAGCCCGAGTGCTGCATCGATGACGTCATCCATCATGAGGTCAAGGAGATTGGGACGCACATCTTGGTCTGTGCCGTCAGTTACACCACTCAGACCGGGGAGAAACTTTACTTTAGAAAGTTCTTCAAATTTCAGGTTCTCAAGCCTCTAGATGTAAAAACCAAATTCTACAATGCTGAGAGTGACCTCAGTTCAGTGACGGATGAGGTGTTTCTAGAGGCGCAGATTCAGAACATCACCACATCCCCAATGTTCATGGAGAAAGTCTCTCTGGAACCGTCTATGATGTACAACGTCACGGAGCTCAACAATGTGTCCGCTGGCAGTGACGGCGAGTCCACGTTTGGGAAGATGTCGTACCTGCAGCCGTTGGACACGAGGCAGTACTTGTACTGTTTGAAGCCCAAGCCGGAGTTTGCGGAGAAGGCCGGGGTCATTAAGGGTGTGACGGTGATCGGAAAACTAGACATTGTTTGGAAAACCAACCTTGGGGAGAGAGGACGTCTACAGACCAGCCAACTCCAGAGAATGGCTCCCGGATACGGCGACGTCAGGCTTTCTCTGGAGCTGATCCCAGACACGGTCAGTCTAGAAGAGCCCTTCGACATCACCTGTAAAATCACGAACTGCAGTGAGAGGACCATGGATCTGGTGCTGGAGATGTGTAACACTCGCTCCGTTCACTGGTGCGGGGTGTCAGGCAGACAGCTGGGAAAACTCAGCCCCAGCGCTTCCCTCTCCATTCCTCTCAAACTACTGTCCTCCGTCCAGGGTTTACAGAGCATATCAGGACTGCGGCTAACGGACACCTTCCTGAAGAGGACGTATGAATATGATGACATCGCACAGGTCTGTGTGGTGTGTCCTTACACCAGTCCAGAGAGCTGAAACCCCGTGGCATTTTGCGCTGTCTGTGTCAATGGACCAACTCCCATCTGTTCTGCATCTATTAATATAACACCTTCTGCTCTTTACCTTTACGCTTGTTGTTTTAAGATGTCATTTTTAAGGCCTTAATGGTGATTTTAACTGTcggtgtaaataaaaaaaatgaaatatgtgtaT
>XM_043250532.1
GCGGTTTGTGCCTCTGTACTCGCCGTAAGCAGCTGATATGCAGGTCAAAGGGCAGTCCGGTGCAGCAGACAAGATGGATGTCAACCAGGCAAAACAAGAGCATCTGCTCGCTTTAAAAGTGATGCGGCTGACCAAACCTACACTTTTTACAAACATGCCGGTGACGTGCGAGGACCGAGATCTTCCAGGTGATTTGTTTATACGACTCATGAAAGACGACCCATCGACCGTAAAGGGGGCAGAAACACTAATCCTCGGGGAAATGCTCACTCTGCCACAGAACTTTGgaaatattttccTTGGCGAGACCTTCTCCAGTTACATCAGCGTGCACAACGACAGCAATCAAGTGGTCAAGGATATTCTTGTAAAGGCGGACCTGCAGACGAGCTCCCAGAGGTTAAATTTATCGGCTTCAAACTCGGCCGTTTCGGAGCTCAAGCCCGAGTGCTGCATCGATGACGTCATCCATCATGAGGTCAAGGAGATTGGGACGCACATCTTGGTCTGTGCCGTCAGTTACACCACTCAGACCGGGGAGAAACTTTACTTTAGAAAGTTCTTCAAATTTCAGGTTCTCAAGCCTCTAGATGTAAAAACCAAATTCTACAATGCTGAGACGGATGAGGTGTTTCTAGAGGCGCAGATTCAGAACATCACCACATCCCCAATGTTCATGGAGAAAGTCTCTCTGGAACCGTCTATGATGTACAACGTCACGGAGCTCAACAATGTGTCCGCTGGCAGTGACGGCGAGTCCACGTTTGGGAAGATGTCGTACCTGCAGCCGTTGGACACGAGGCAGTACTTGTACTGTTTGAAGCCCAAGCCGGAGTTTGCGGAGAAGGCCGGGGTCATTAAGGGTGTGACGGTGATCGGAAAACTAGACATTGTTTGGAAAACCAACCTTGGGGAGAGAGGACGTCTACAGACCAGCCAACTCCAGAGAATGGCTCCCGGATACGGCGACGTCAGGCTTTCTCTGGAGCTGATCCCAGACACGGTCAGTCTAGAAGAGCCCTTCGACATCACCTGTAAAATCACGAACTGCAGTGAGAGGACCATGGATCTGGTGCTGGAGATGTGTAACACTCGCTCCGTTCACTGGTGCGGGGTGTCAGGCAGACAGCTGGGAAAACTCAGCCCCAGCGCTTCCCTCTCCATTCCTCTCAAACTACTGTCCTCCGTCCAGGGTTTACAGAGCATATCAGGACTGCGGCTAACGGACACCTTCCTGAAGAGGACGTATGAATATGATGACATCGCACAGGTCTGTGTGGTGTGTCCTTACACCAGTCCAGAGAGCTGAAACCCCGTGGCATTTTGCGCTGTCTGTGTCAATGGACCAACTCCCATCTGTTCTGCATCTATTAATATAACACCTTCTGCTCTTTACCTTTACGCTTGTTGTTTTAAGATGTCATTTTTAAGGCCTTAATGGTGATTTTAACTGTcggtgtaaataaaaaaaatgaaatatgtgtaT
>XM_043250533.1
GCGGTTTGTGCCTCTGTACTCGCCGTAAGCAGCTGATATGCAGGTCAAAGGGCAGTCCGGTGCAGCAGACAAGATGGATGTCAACCAGGCAAAACAAGAGCATCTGCTCGCTTTAAAAGTGATGCGGCTGACCAAACCTACACTTTTTACAAACATGCCGGTGACGTGCGAGGACCGAGATCTTCCAGGTGATTTGTTTATACGACTCATGAAAGACGACCCATCGACCGTAAAGGGGGCAGAAACACTAATCCTCGGGGAAATGCTCACTCTGCCACAGAACTTTGgaaatattttccTTGGCGAGACCTTCTCCAGTTACATCAGCGTGCACAACGACAGCAATCAAGTGGTCAAGGATATTCTTGTAAAGGCGGACCTGCAGACGAGCTCCCAGAGGTTAAATTTATCGGCTTCAAACTCGGCCGTTTCGGAGCTCAAGCCCGAGTGCTGCATCGATGACGTCATCCATCATGAGGTCAAGGAGATTGGGACGCACATCTTGGTCTGTGCCGTCAGTTACACCACTCAGACCGGGGAGAAACTTTACTTTAGAAAGTTCTTCAAATTTCAGGTTCTCAAGCCTCTAGATGTAAAAACCAAATTCTACAATGCTGAGAGTGACCTCAGTTCAGTGACGGATGAGGTGTTTCTAGAGGCGCAGATTCAGAACATCACCACATCCCCAATGTTCATGGAGAAAGTCTCTCTGGAACCGTCTATGATGTACAACGTCACGGAGCTCAACAATGTGTCCGCTGGCAGTGACGGCGAGTCCACGTTTGGGAAGATGTCGTACCTGCAGCCGTTGGACACGAGGCAGTACTTGTACTGTTTGAAGCCCAAGCCGGAGTTTGCGGAGAAGGCCGGGGTCATTAAGGGTGTGACGGTGATCGGAAAACTAGACATTGTTTGGAAAACCAACCTTGGGGAGAGAGGACGTCTACAGACCAGCCAACTCCAGAGAATGGCTCCCGGATACGGCGACGTCAGGCTTTCTCTGGAGCTGATCCCAGACACGGTCAGTCTAGAAGAGCCCTTCGACATCACCTGTAAAATCACGAACTGCAGAGCATATCAGGACTGCGGCTAACGGACACCTTCCTGAAGAGGACGTATGAATATGATGACATCGCACAGGTCTGTGTGGTGTGTCCTTACACCAGTCCAGAGAGCTGAAACCCCGTGGCATTTTGCGCTGTCTGTGTCAATGGACCAACTCCCATCTGTTCTGCATCTATTAATATAACACCTTCTGCTCTTTACCTTTACGCTTGTTGTTTTAAGATGTCATTTTTAAGGCCTTAATGGTGATTTTAACTGTcggtgtaaataaaaaaaatgaaatatgtgtaT

Function

symbol description
trappc13 Predicted to be part of TRAPPIII protein complex. Is expressed in notochord. Orthologous to human TRAPPC13 (trafficking protein particle complex subunit 13).

NR:

description
PREDICTED: trafficking protein particle complex subunit 13 isoform X2

GO: NA

KEGG:

id description
K20310 TRAPPC13; trafficking protein particle complex subunit 13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250531.1 True 1504 mRNA 0.49 13 2063385 2072915
XM_043250532.1 False 1486 mRNA 0.49 12 2063385 2072915
XM_043250533.1 False 1356 mRNA 0.49 12 2063385 2072915

Neighbor

gene id symbol gene type direction distance location
nln nln,LOC107667266,LOC107548669,LOC107705053,LOC107558702,LOC107743138 coding downstream 7328 2044162 ~ 2056057 (-)
erbin erbb2ip,LOC107667260,LOC107726559,LOC107705051,LOC107742960 coding downstream 19950 1978261 ~ 2043435 (-)
zfand5b LOC107705050,LOC107742939,LOC107726558,LOC107667265 coding downstream 87002 1969482 ~ 1976383 (-)
apba1b LOC107667257,LOC107558696,LOC107705048,LOC107548674,LOC107742885 coding downstream 123388 1928874 ~ 1939997 (-)
trim23 trim23,LOC107658681 coding downstream 201330 1854090 ~ 1862055 (-)
kcnv2a kcnv2a,kcnv2,LOC107726563,LOC107667263,LOC107558705,LOC107743156,LOC108428855 coding upstream 9000 2081915 ~ 2084190 (-)
vldlr vldlr,LOC107705052,LOC107548665,LOC107558669,LOC107667264 coding upstream 13206 2086121 ~ 2105289 (-)
sh3bp2 sh3bp2,LOC107667261,LOC107705055,LOC107558670,LOC107743173,LOC106568140 coding upstream 34195 2107110 ~ 2124732 (-)
parm1 NA coding upstream 108880 2181795 ~ 2186043 (-)
si:dkey-88l16.3 LOC107667258,LOC107738845,LOC107743196,LOC107548646 coding upstream 126068 2198983 ~ 2228990 (-)
LOC122353011 NA non-coding downstream 186633 1869993 ~ 1876752 (-)
G74149 NA non-coding downstream 194439 1867972 ~ 1868946 (-)
G74109 NA non-coding downstream 357708 1705098 ~ 1705677 (-)
G74110 LOC107558694,LOC107685106,LOC107658677,LOC107713304 non-coding downstream 360267 1702757 ~ 1703118 (-)
G74090 NA non-coding downstream 402822 1658534 ~ 1660563 (-)
LOC122352694 NA non-coding upstream 89229 2162144 ~ 2162704 (-)
LOC122352693 NA non-coding upstream 93476 2166391 ~ 2167347 (-)
LOC122352691 NA non-coding upstream 96404 2169319 ~ 2170549 (-)
G74317 NA non-coding upstream 98092 2171007 ~ 2174363 (-)
G74319 NA non-coding upstream 106291 2179206 ~ 2179433 (-)
adamts6 adamts6,LOC107744255,LOC107685101,LOC107713302 other downstream 216483 1774223 ~ 1846902 (-)
nrarpa nrarpa,nrarp other downstream 575377 1483399 ~ 1488008 (-)
G74031 NA other downstream 589507 1466751 ~ 1473878 (-)
G74058 NA other downstream 614499 1445323 ~ 1448886 (-)
si:dkeyp-41f9.4 NA other downstream 1175373 885156 ~ 888012 (-)
LOC122352692 NA other upstream 121170 2194085 ~ 2197429 (-)
LOC122352587 cntfr,LOC107554853,LOC107756542 other upstream 644182 2717097 ~ 2767195 (-)
LOC122353137 palm2,LOC107702598,LOC107715893,LOC107732273,LOC107653494,LOC107569382 other upstream 1264424 3337339 ~ 3377784 (-)
hnrnpd LOC107702593,LOC107715890,LOC107573849 other upstream 1528697 3601612 ~ 3607788 (-)
LOC122352741 diras2,LOC107560410,LOC107736992,LOC107702570,LOC107558266,LOC107715878,LOC107670053 other upstream 1832699 3905614 ~ 3912742 (-)

Expression


Co-expression Network