ddhd2 (ddhd2,LOC107553702,LOC107678022,LOC107586212,LOC107687560)


Basic Information

Item Value
gene id ddhd2
gene name ddhd2,LOC107553702,LOC107678022,LOC107586212,LOC107687560
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 6567280 ~ 6574724 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250566.1
TGCGCGTGCGATGATGAGCGTCATAATTTCACATTGATTTGACTCACAATAACCCTTCACACCGTAGTGAAATACAGTTGCCGTTTTTGATTGGCAGTCATTTGAAAATTCCCCTTTTAGTCGACCTTTAGACACAAAGACGATTTATAAGAGTTCAGGATTTACTGCTCGTCTACCGCAGCGAGCGAACGACGGCGCGAGgtttgctctctctctgtcagaaATCAATTTTGTCCCAAGCGTGTATCCGTACGCAGAGCCGTCCATTTGCCTTGGCGTGGCGTCCCTCATGTTCTCATCATGAATATTGTTGAGCCGTATGAACCCATCCAGCACCACTGGTTCTACAACCAGCAGGTGGACTTCAAAGACTCCTGGCAACCCTTCAGCAGAGAAGACTCACAGCGGCTGGAGGATGCTTACGCTCAAGTGGGGAAAAATGAAAAGGATGAAGTGGTAGTGGCTACAGATGGAAGGAGGTATGACGTCAGGCTGCGTGAAAGGAAACGTTACTCCGTGTATTGGGAACAGAAGCCCGCCGAGGTCAGGCGCTGCTCCTGGTTCCACAAAGGCAGCAAAGATATGACCTACACTCCCTACAGTGAAGAACTCAGTGATTTCCTAGAGgaTGCCTATATGATTGCAATGACCCTGGACGAATGGAAGACGAATTTGGAGATCCCGACAGGAGAAACTGTGATCCTTCACAATCCCAAGCTCATGATGCAGTATCCCAGCAGCTGTAAAGAATTCCCCCCGTCCCCGACTGAACGGACTCAACCCAGGACACTAAAGAGAGGAGTTGAGAATATTCCAGTAGAGATTCCAGAGGAAGAACCAGAGATAGTAGATCACCTAGTGTTCATGGTTCACGGTATCGGTCCTGCCTGTGACATACGTCTCCGTGGCATTGTCCAGTGTGTTAATGAATTTCGGAACGTCTCCGACGGCCTCATAAAGAGCCATTTTCGGCAGAGTGAGGAGTCGTGCATTATTGGAAGGGTCGAGTACCTTCCTGTCAACTGGAACAAAGTCTTGCATGGAGAAACTATAGGAGTTGACAGAGACATTGAGAGAATCACTTTGCCTAGCATTAGCCGCCTGCGTCAGTTCAGCAACGACACCGTGTTGGACCTTTTCTTCTACAACAGCCCTACTTATTGCCAGACTATTGTGGATACAGTGGCCTCTGAGATCAACCGTTTGCACAGCCTCTTCCTCCAGAGACATCCACACTTCACAGGACACGTTTCCCTGGTTGGGCACAGCCTTGGCACACTGATCCTGTTTGACCTCTTGACCAATCAAGAGACCGAtacagatggcacacctcatgAGCTCGTTGAGGACACTCATCTAGACACAGGCTGCAGTTCATATGAGAGTCTTGAGGAGGCGCTGAAAGGCCATGGGTTGGAGGAGCACCTCAATACGCTGCACAGAGAACAACTGGATATGGAGTCcttgATGCTTTGCTCAGAGAAGGACTTAAAAGATATCGGAATACCTCTGGGTCCTCGCAAGAAAATTATGAACTGTGTGAAGAAATGGAAGCACTCTAGATCTGGAGGTGGACATGCAGCCCAAAATGAGATGCACTCCCCAAGTCTAGGGATGAGAAATGAACATCACACCCCCACCACTAGCGCAGTTGATTATCAGCATTTTGATGTGGGCATTGGACAAGTATCCATCGATTATCCTCAGTTAGCCTTTCATCCTCAGGCGTTCTTCGCCATGGGTTCACCCATAGGAATGTTTTTAACCGTCAGAGGTCTGAAGAGGATAGATCCTAATTACAAATTCCCGACCTGCAAGAGTTTCTTCAACATCTTCCATCCATTTGACCCAGTGGCGTATCGAGTCGAGCCCATGATTTTGTCTCAAGACGTGGACTTGCCGCCCATGTTGATACCCCATCATAAAGGCAGAAAACGGATGCACCTCGAGCTCAGAGAAGGTTTGACTCGAGTCAGTTCTGATTTGCTGGGATCCCTACGAATGGTTTGGCAGAGCATCTCTCAGGTCCCAACCCCAGCTCTCGCCGAGGGTGAAATCAGTACCATGGCCCCCCCAGACGAAGCGGACGTGTCACCAATGGAGCAGGATGAAAGAAGCTTCACCAAGGTGGGGATGTTGAATCGTGGGAGACGTATTGACTTTGTCCTTCAGGAGACACCAATTGAAAGTTTCAATGAGTACCTGTTTGCCATACAGAGCCATTTGTGCTACTGGGAGTCTGAAGATACTGTTCTGATGGTTCTGAGAGAGATTTATGGAAATATCCCAGTGAGAAATACGCATTTATGATAATTATACACCCATTGTACTGTACGACTACCTTTAAAGCCAGTCCAGTCCACAGTGAGTTGGTTCGCTCTTCACATTTTAACCAGCCAGCCAGCCAATAAACTACCTAAAAAATGAAGACTTTGAAATTGGAATCCCAATTGAACTGTTGCCAGGTATTGGGATATTGTTGCAGTATTCTTAAAGCAGGATTACGGATATTTGATACGCACAATAACCTTTTGTGCAGTGATGTGCACTGTAATAGAAACTTGCGTTTAATGTGTGTAGCCTACTTATGTAACATCGGTCAGTGTTTTCTAATTTtccaattaattattattattatgtatttataatgtttgggtatttgtgatatttttaattgcattatataattaaaactcCTAACCCCGAA

Function

symbol description
ddhd2 Predicted to enable phospholipase activity and triglyceride lipase activity. Predicted to be active in COPII-coated ER to Golgi transport vesicle. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 54. Orthologous to human DDHD2 (DDHD domain containing 2).

NR:

description
phospholipase DDHD2-like isoform X2

GO: NA

KEGG:

id description
K16545 DDHD2; phospholipase DDHD2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250566.1 True 2707 mRNA 0.46 17 6567280 6574724

Neighbor

gene id symbol gene type direction distance location
tacc1 LOC107678021,LOC107553704,LOC107720721,LOC107687537 coding downstream 3847 6543568 ~ 6563433 (-)
loxl2a loxl2a,LOC107720722,LOC107678026,LOC107553706,LOC107705082,LOC107687596 coding downstream 29285 6515997 ~ 6537995 (-)
sfrp1b LOC107678049,LOC107687633,LOC107586121,LOC107705085,LOC107553708 coding downstream 68069 6494749 ~ 6499211 (-)
LOC122352455 LOC107677991,LOC107705074,LOC107688544,LOC107720593,LOC107553699 coding downstream 79556 6460188 ~ 6487724 (-)
LOC122352601 LOC107677974,LOC107720582,LOC107705076,LOC107553700,LOC107586208,LOC107688554 coding downstream 147116 6411676 ~ 6420164 (-)
plpp5 plpp5,LOC107720719,LOC107678050,LOC107553701,LOC107705081,LOC107586127,LOC107687571 coding upstream 697 6575421 ~ 6579948 (-)
nsd3 whsc1l1,LOC107720716,LOC107687514,LOC107705078,LOC107678004 coding upstream 5897 6580621 ~ 6601391 (-)
rassf2b LOC107720572,LOC107708653,LOC107687490,LOC107586133,LOC107678048 coding upstream 56957 6631681 ~ 6638407 (-)
kcnip3b kcnip3,kcnip3b,LOC107572711,LOC107678047,LOC107720714,LOC107687448,LOC108233759,LOC101482209,LOC108264878,LOC106535652 coding upstream 66269 6640993 ~ 6662838 (-)
pcdh1a LOC107564544,LOC107678039,LOC107708655,LOC107720713,LOC107586135,LOC108437809 coding upstream 160196 6734920 ~ 6806411 (-)
G75294 NA non-coding downstream 184839 6380936 ~ 6382441 (-)
G75297 NA non-coding downstream 214396 6352535 ~ 6352884 (-)
G75209 NA non-coding downstream 289950 6272225 ~ 6277330 (-)
G75191 NA non-coding downstream 411504 6148920 ~ 6155776 (-)
G75190 NA non-coding downstream 418771 6145846 ~ 6148509 (-)
G75366 NA non-coding upstream 71200 6645924 ~ 6648670 (-)
G75429 NA non-coding upstream 455269 7029993 ~ 7082458 (-)
G75433 NA non-coding upstream 503831 7078555 ~ 7079365 (-)
G75445 NA non-coding upstream 533034 7107758 ~ 7231920 (-)
G75459 pcdh1a3,pcdh1a4,pcdh1a6,LOC107552014,LOC107720569,LOC107720570,LOC107742396,LOC107586180,LOC107677970,LOC107742394,LOC107742395,LOC107678002 non-coding upstream 552864 7127588 ~ 7148979 (-)
si:ch211-113d22.2 si:ch211-113d22.2,LOC107677989,LOC107705073,LOC107586211,LOC107688532 other downstream 26307 6538122 ~ 6540973 (-)
LOC122352369 colgalt1,LOC107672476,LOC107711180,LOC107757371,LOC107670492,LOC107567242,LOC108429625,LOC107587993 other downstream 1538767 5019307 ~ 5028513 (-)
LOC122352741 diras2,LOC107560410,LOC107736992,LOC107702570,LOC107558266,LOC107715878,LOC107670053 other downstream 2654538 3905614 ~ 3912742 (-)
hnrnpd LOC107702593,LOC107715890,LOC107573849 other downstream 2959492 3601612 ~ 3607788 (-)
LOC122353137 palm2,LOC107702598,LOC107715893,LOC107732273,LOC107653494,LOC107569382 other downstream 3189496 3337339 ~ 3377784 (-)
sprn2 LOC107578968,LOC107720715 other upstream 53701 6628425 ~ 6631188 (-)
G75454 LOC107552069,LOC107678002,LOC107586137,LOC107687386,LOC107742371,LOC108437806 other upstream 602600 7177324 ~ 7180821 (-)
LOC122352929 LOC107675999,LOC107677996,LOC107552059,LOC107720693 other upstream 949470 7524194 ~ 7528558 (-)
G75562 LOC107675999,LOC107720693,LOC107677996,LOC107552059 other upstream 956137 7530861 ~ 7544090 (-)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other upstream 1276297 7851021 ~ 7859714 (-)

Expression


Co-expression Network