snx30 (snx30,LOC107569385,LOC107570383,LOC107732699,LOC107715846)


Basic Information

Item Value
gene id snx30
gene name snx30,LOC107569385,LOC107570383,LOC107732699,LOC107715846
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 3574296 ~ 3586506 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250571.1
TTCCGCTTCTGCGCGGTGGCGGTCAGCTGACAGATGTTTGCCGTCTCGGATCGTGAggctgtgaaataaaaacacctgCGCGATCAGAGCCGATCGGCGCGATGAGTGCCGGCGCCCCCCGATCTCTGCCCTCCTCCGGACAGAAGTCCATCCAGGACATCTGCCACCCTCTGTCCGCCGAGGAGAGCGCCCTAAACCCCGGCAGCGCTGCAGAGAAGGACGTGAGCATGCCCAATGGGACTCCAGTGGACACATCAAGCCCCGCCTCCTCTTCGTCTCTGCTGAACCGACTGCAGCTCGATGACGATCTGGATGGAGAAACGCGCGATCTGTTTGTGACTGTAGACGACCCAAAGAAGCACGTGTCTACTATGGAGACGTACATCACCTACAGAGTCTGCACAAAGACCACCAGAACGGAGTTTGACCTTCCTGAGTACTCTGTAAGACGACGCTACCAGGATTTCGACTGGCTGAGGAACAAATTAGAGGAAAGCCAACCCACCCATCTTATTCCACCTTTGCCTGAGAAGTTTGTCATGAAGGGAGTGGTGGACCGTTTCTCGGAGGAGTTTGTGGAGACCAGAAGAAAGGCACTGGACAAGTTCCTCAAACGTGTAGCAGACCATCCTGTGCTTTCTTTTAATGAACACTTCAATGCATTTCTCTCAGCAAAGGACTTGAATAAGCGTCAAGGCCTGGCTCTGCTGACTAAAATGGGGGAATCTGTGAAGTATGTGACGGGCGGCTATAAACTGAGGGCACGGCCGGTGGAGTTTGCTGCCATGGGTGACTATCTGGACGTGTTCACACAGAAACTGGGCACCATTGACAGGATAGCGCAGAGAATCATCAAAGAGCAGTCAGAGTTTCTGATGGAGTTGCGAGAGTACGGGCCGGTCTACTCCTCTTGGTCATCCTTTGAGGAGGACCTCCATGATCCTCTGGAGGGGGTTTCGGGGTGCGTGTCGAACTGCTCCAGTGCTCTGGAAGAGCTCACCGAGGACATGAGCGAAGACTTCCTCCCCGTGCTCAGAGAATACGTCCTGTACATTGAGTCCATGAAGAATGTGCTGAAGAAAAGAGACCAAGTTCAGGCTGAGTATGAAACAAAGTTGGAGGCAGTCGTGTTCAGGGAGGACAAAAAGACGCCGGTGCCCACTGACGTGGAGAAGTGCCAGGATCGTCTGGAGTGTTTCAACGCAGACCTGAAGGCTGACTGGGACCGCTGGGAGAACAACAAACGACAGGACTTCAGACAGCTGCTGACCGGCATGGCtgacaaaaacatacagtactACGAGAAGTGCCTTGCAGCATGGGAGTCCCTCATTCCACTGTTACAAGACAAACAGGAAGCAAAAGGCGAAACGAACTGAGCGTGTTTCAGCCTTTCTCCCGACCACCGGCGACCGCCCAGAGCTCGTGATCCAGGCTGTCCTCGGACCGGAGCTTTCGCGAGACGGGACGCTGCTAAGAGCGGACGAGCTCCGAGAATCCATTTCGTAAAGTGTCTTTATTTGTCAAAGCCCATCCATCCAaccacccctctctctctcttttttttttttttcttctgaagctCGGACTGGAACTGCAGAAGAAACTGTAAACGCTTCGGGAAACACTAAAAGGATCGGGTGAGGCGGATGAGAGACGTTTTTGGCGACGTCGTCaaatttgtagtttttagtCAGATGTTTGCCGGttatccttttttttgtaaatgcttgTGTTTTGAAGCTGATCCGTCCAAGGGAACCGTGACGTCagtgtttcgtttttttttggttcacgTTCACGAAGAGTCCCGTGGAAGCTTTGCCAACATTCCTCTTGCCAAAGATGTGGAACTGAAGTTTGATATCTCGGTAGTAGCGTCcgcctttgttttttttttgctctctcagAAGATGTACTGGAAACCGGCATCCCTCTAAACCCCAGACCGGCCGTTCCCTCGTTACACTCTAAAGCTGTTGCGTTGAAATGAAGGTTGTTTTCCAGCCATTCTTGacctcattaaatatttatgactAAAGATGCGTCATAATGATTTGTGCTCGTCTTGGCGGGGCAGGATCTGTGGTTGGGTCGTCTAGTTTAATGCGAGGCGAATGTAATGTGGGACGCTTCCTGTCAAACTCTGGGATAACAACGATGTGTTATACGAATCAACGAATCTGAAATCCTAGAAGTTTTAGTAAATGCGTTACGGTTAATGTTTTCGGCAGCTGTTGCGTTCAGTGCATTTTACTGTTCGAATGTTTGGGGTCggtaagtttatttattatgaatttttttataaattaagtcTCTTTTATGCTTACCgaggctgcgtttatttaatcagaaatgcagtaaaaacaactaaatattattacaatttaaaataattttattatttgaatatatcgCGAAATGTGattcattgctccagtcttcagtgtcacgcgatccttcagaaatcgttctaaaatgctaatttgctgctcaagaaacatttctgattattatcagtgttaaaaaaaacaatcgaGCTGCTTCCTTTTTACGGGAGCCGacgtacattttatttttagcgaatataaaggtcaaaagaacagcatttatttgaaagggAAATATCTATATAACTTTATTgatgtatttactgtcacttttgatcaattgttAGGCTGCCTCAccgaataaaagtattaatttgtttatagaccccaaacttttgaacggtaatATTCAGCACTGACACTGTAGAATTATAGATGCCAAACCAACCAAacaccttttctttttaatattccCGATGCAAAGTGTTCCTGACCATGTTTTTGTGCGTTTCTCACAAAAACTGTAGAATGTCTTGCTTTTGTTTCAGCCCTTAAtcaaaacaatacttttttaacaaagaaaatgaagcctATTTCAAGTCTGTTTAAAGGCATATTTTAACCAGAAATGTCAACCGAATTTTCATTTATGATTATCGTTTGTAATtgctatttattataattattatgatttttttttttgcattgtacttttttaggttttaatattttttttatgtatatttgatgTGATTTCAAATTGTATTATAGACGTGTTGCATTAtaatttttcagtaaaaagTGGCAGGGAAAGCTTAATTGCTTTATTATGGACGTTAATGAAGATGGGAATGAAAATTAGGCTTCATTTtcgccatgtttttttttttttttttttttttcaaattataaaaaacagGCATTTGATGAGATTCACCACTACCGCAGAATGAAAAAAgtgctaaagtaaaaaaaaaaaaagtgaaatcaatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
>XM_043250572.1
TTCCGCTTCTGCGCGGTGGCGGTCAGCTGACAGATGTTTGCCGTCTCGGATCGTGAggctgtgaaataaaaacacctgCGCGATCAGAGCCGATCGGCGCGATGAGTGCCGGCGCCCCCCGATCTCTGCCCTCCTCCGGACAGAAGTCCATCCAGGACATCTGCCACCCTCTGTCCGCCGAGGAGAGCGCCCTAAACCCCGGCAGCGCTGCAGAGAAGGACGTGAGCATGCCCAATGGGACTCCAGTGGACACATCAAGCCCCGCCTCCTCTTCGTCTCTGCTGAACCGACTGCAGCTCGATGACGATCTGGATGGAGAAACGCGCGATCTGTTTGTGACTGTAGACGACCCAAAGAAGCACGTGTCTACTATGGAGACGTACATCACCTACAGAGTCTGCACAAAGACCACCAGAACGGAGTTTGACCTTCCTGAGTACTCTGTAAGACGACGCTACCAGGATTTCGACTGGCTGAGGAACAAATTAGAGGAAAGCCAACCCACCCATCTTATTCCACCTTTGCCTGAGAAGTTTGTCATGAAGGGAGTGGTGGACCGTTTCTCGGAGGAGTTTGTGGAGACCAGAAGAAAGGCACTGGACAAGTTCCTCAAACGTGTAGCAGACCATCCTGTGCTTTCTTTTAATGAACACTTCAATGCATTTCTCTCAGCAAAGGACTTGAATAAGCGTCAAGGCCTGGCTCTGCTGACTAAAATGGGGGAATCTGTGAAGTATGTGACGGGCGGCTATAAACTGAGGGCACGGCCGGTGGAGTTTGCTGCCATGGGTGACTATCTGGACGTGTTCACACAGAAACTGGGCACCATTGACAGGATAGCGCAGAGAATCATCAAAGAGCAGTCAGAGTTTCTGATGGAGTTGCGAGAGTACGGGCCGGTCTACTCCTCTTGGTCATCCTTTGAGGAGGACCTCCATGATCCTCTGGAGGGGGTTTCGGGGTGCGTGTCGAACTGCTCCAGTGCTCTGGAAGAGCTCACCGAGGACATGAGCGAAGACTTCCTCCCCGTGCTCAGAGAATACGTCCTGTACATTGAGTCCATGAAGGTGCCCACTGACGTGGAGAAGTGCCAGGATCGTCTGGAGTGTTTCAACGCAGACCTGAAGGCTGACTGGGACCGCTGGGAGAACAACAAACGACAGGACTTCAGACAGCTGCTGACCGGCATGGCtgacaaaaacatacagtactACGAGAAGTGCCTTGCAGCATGGGAGTCCCTCATTCCACTGTTACAAGACAAACAGGAAGCAAAAGGCGAAACGAACTGAGCGTGTTTCAGCCTTTCTCCCGACCACCGGCGACCGCCCAGAGCTCGTGATCCAGGCTGTCCTCGGACCGGAGCTTTCGCGAGACGGGACGCTGCTAAGAGCGGACGAGCTCCGAGAATCCATTTCGTAAAGTGTCTTTATTTGTCAAAGCCCATCCATCCAaccacccctctctctctcttttttttttttttcttctgaagctCGGACTGGAACTGCAGAAGAAACTGTAAACGCTTCGGGAAACACTAAAAGGATCGGGTGAGGCGGATGAGAGACGTTTTTGGCGACGTCGTCaaatttgtagtttttagtCAGATGTTTGCCGGttatccttttttttgtaaatgcttgTGTTTTGAAGCTGATCCGTCCAAGGGAACCGTGACGTCagtgtttcgtttttttttggttcacgTTCACGAAGAGTCCCGTGGAAGCTTTGCCAACATTCCTCTTGCCAAAGATGTGGAACTGAAGTTTGATATCTCGGTAGTAGCGTCcgcctttgttttttttttgctctctcagAAGATGTACTGGAAACCGGCATCCCTCTAAACCCCAGACCGGCCGTTCCCTCGTTACACTCTAAAGCTGTTGCGTTGAAATGAAGGTTGTTTTCCAGCCATTCTTGacctcattaaatatttatgactAAAGATGCGTCATAATGATTTGTGCTCGTCTTGGCGGGGCAGGATCTGTGGTTGGGTCGTCTAGTTTAATGCGAGGCGAATGTAATGTGGGACGCTTCCTGTCAAACTCTGGGATAACAACGATGTGTTATACGAATCAACGAATCTGAAATCCTAGAAGTTTTAGTAAATGCGTTACGGTTAATGTTTTCGGCAGCTGTTGCGTTCAGTGCATTTTACTGTTCGAATGTTTGGGGTCggtaagtttatttattatgaatttttttataaattaagtcTCTTTTATGCTTACCgaggctgcgtttatttaatcagaaatgcagtaaaaacaactaaatattattacaatttaaaataattttattatttgaatatatcgCGAAATGTGattcattgctccagtcttcagtgtcacgcgatccttcagaaatcgttctaaaatgctaatttgctgctcaagaaacatttctgattattatcagtgttaaaaaaaacaatcgaGCTGCTTCCTTTTTACGGGAGCCGacgtacattttatttttagcgaatataaaggtcaaaagaacagcatttatttgaaagggAAATATCTATATAACTTTATTgatgtatttactgtcacttttgatcaattgttAGGCTGCCTCAccgaataaaagtattaatttgtttatagaccccaaacttttgaacggtaatATTCAGCACTGACACTGTAGAATTATAGATGCCAAACCAACCAAacaccttttctttttaatattccCGATGCAAAGTGTTCCTGACCATGTTTTTGTGCGTTTCTCACAAAAACTGTAGAATGTCTTGCTTTTGTTTCAGCCCTTAAtcaaaacaatacttttttaacaaagaaaatgaagcctATTTCAAGTCTGTTTAAAGGCATATTTTAACCAGAAATGTCAACCGAATTTTCATTTATGATTATCGTTTGTAATtgctatttattataattattatgatttttttttttgcattgtacttttttaggttttaatattttttttatgtatatttgatgTGATTTCAAATTGTATTATAGACGTGTTGCATTAtaatttttcagtaaaaagTGGCAGGGAAAGCTTAATTGCTTTATTATGGACGTTAATGAAGATGGGAATGAAAATTAGGCTTCATTTtcgccatgtttttttttttttttttttttttcaaattataaaaaacagGCATTTGATGAGATTCACCACTACCGCAGAATGAAAAAAgtgctaaagtaaaaaaaaaaaaagtgaaatcaatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

symbol description
snx30 Predicted to enable phosphatidylinositol binding activity. Predicted to act upstream of or within protein transport. Orthologous to human SNX30 (sorting nexin family member 30).

NR:

description
PREDICTED: sorting nexin-30

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K17921 SNX7_30; sorting nexin-7/30

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250571.1 True 3392 mRNA 0.44 9 3574296 3586506
XM_043250572.1 False 3305 mRNA 0.44 8 3574296 3586506

Neighbor

gene id symbol gene type direction distance location
LOC122352385 LOC101886557 coding downstream 313681 3259677 ~ 3260615 (-)
plppr1 plppr1,LOC107702599,LOC107750956,LOC107653496,LOC107710008,LOC106568589,LOC102776600 coding downstream 357485 3167723 ~ 3216811 (-)
LOC122352946 epha5,LOC107702602,LOC108428864,LOC107709147 coding downstream 609863 2898351 ~ 2964433 (-)
lpar1 lpar1,LOC107554848,LOC107723319,LOC107756539,LOC107554242 coding downstream 723568 2829977 ~ 2850728 (-)
musk musk,LOC107653500 coding downstream 765310 2796845 ~ 2808986 (-)
mat2al mat2al,LOC107732036,LOC107653488,LOC107573852,LOC108440739,LOC100699062,LOC108276530,LOC102202437,LOC101466580 coding upstream 3761 3590267 ~ 3594821 (-)
hnrnpdl hnrnpdl,hnrpdl,LOC107715891,LOC107702595,LOC107731491,LOC107653490 coding upstream 21461 3607967 ~ 3612283 (-)
tmem150c tmem150c,LOC107558260 coding upstream 31009 3617515 ~ 3625783 (-)
sec31a LOC107715884,LOC107702588 coding upstream 57563 3644069 ~ 3663881 (-)
pam pam,LOC107737006,LOC107670040,LOC107560403,LOC107715844,LOC107702561 coding upstream 257186 3843692 ~ 3879520 (-)
G74533 NA non-coding downstream 40580 3309787 ~ 3533716 (-)
G74537 plppr1,LOC107750956,LOC107702599,LOC107710008,LOC107653496 non-coding downstream 119302 3450537 ~ 3454994 (-)
G74459 NA non-coding downstream 524778 3049232 ~ 3049518 (-)
G74455 NA non-coding downstream 684348 2889445 ~ 2889948 (-)
G74436 NA non-coding downstream 792780 2780642 ~ 2781516 (-)
G74551 NA non-coding upstream 929 3587435 ~ 3587894 (-)
G74574 NA non-coding upstream 113099 3699605 ~ 3700769 (-)
G74614 LOC107715880,LOC107702582,LOC107558262,LOC107560412,LOC107670041,LOC107737037 non-coding upstream 193553 3780059 ~ 3834370 (-)
G74609 NA non-coding upstream 234885 3821391 ~ 3824596 (-)
G74624 NA non-coding upstream 240619 3827125 ~ 3828028 (-)
LOC122353137 palm2,LOC107702598,LOC107715893,LOC107732273,LOC107653494,LOC107569382 other downstream 196512 3337339 ~ 3377784 (-)
LOC122352587 cntfr,LOC107554853,LOC107756542 other downstream 807101 2717097 ~ 2767195 (-)
LOC122352692 NA other downstream 1376867 2194085 ~ 2197429 (-)
adamts6 adamts6,LOC107744255,LOC107685101,LOC107713302 other downstream 1727394 1774223 ~ 1846902 (-)
nrarpa nrarpa,nrarp other downstream 2086288 1483399 ~ 1488008 (-)
hnrnpd LOC107702593,LOC107715890,LOC107573849 other upstream 15106 3601612 ~ 3607788 (-)
LOC122352741 diras2,LOC107560410,LOC107736992,LOC107702570,LOC107558266,LOC107715878,LOC107670053 other upstream 319108 3905614 ~ 3912742 (-)
LOC122352369 colgalt1,LOC107672476,LOC107711180,LOC107757371,LOC107670492,LOC107567242,LOC108429625,LOC107587993 other upstream 1432801 5019307 ~ 5028513 (-)
si:ch211-113d22.2 si:ch211-113d22.2,LOC107677989,LOC107705073,LOC107586211,LOC107688532 other upstream 2951616 6538122 ~ 6540973 (-)
sprn2 LOC107578968,LOC107720715 other upstream 3041919 6628425 ~ 6631188 (-)

Expression


Co-expression Network