pcna (pcna,LOC107658578,LOC107583397,LOC107688976)


Basic Information

Item Value
gene id pcna
gene name pcna,LOC107658578,LOC107583397,LOC107688976
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 15862177 ~ 15864530 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250587.1
AAGTTAAGAGTGGGTCAGTTTATGAAAGCCCCAGCAAAAGCGCGCGCAGATACATTCAGAGCCTCGAGAGAAGACGAGATAGACGCGCGTGCGGTTCTTTTAGTCTTTGGATCTGTACGTGCTGGTGCTAAAGCACTTTGATAGGCTAAACTTACTGCGTTCCAGCACTTTTAGACAAGAGGAGCAAAAAGCCAGGCCGCGCTTGTGTCGTAACAAGAATTGTATAACTTTATTTGTCCTCCCGTAAAAAGAAGCACAATGTTTGAGGCACGTCTCGTTCAAGGATCAATCCTTAAGAAGGTTCTGGAGGCCCTGAAAGACCTCATCACCGAAGCCTGCTGGGATGTCAGCTCCTCGGGCATATCGCTGCAGAGCATGGATTCATCTCATGTGTCTCTGGTGCAGCTCACGCTCCGGAGCGATGGATTCGACTCCTACCGCTGCGACAGAAACCTGGCCATGGGTGTCAATTTGAGCAGcATGTCAAAGATTCTTAAGTGTGCTGGAAATGAAGATATCATCACACTTAGGGCAGAAGACAATGCGGACTCTTTGGCACTTGTTTTTGAAACACTCAATCAGGAGAAAGTGTCCGATTATGAGATGAAACTTATGGATCTGGATGTAGAGCAGCTTGGCATTCCAGAGCAGGAATACAGCTGTGTGGTAAAGATGCCCTCTGGTGAATTTGCCCGAATCTGCAGGGATCTGTCACAGATCGGCGATGCCGTCATGATCTCCTGCGCCAAAGACGGTGTGAAGTTCTCTGCTAGTGGAGAGCTGGGCACAGGCAACATCAAGCTCTCACAGACCAGCAATGTCGACAAGGAGGATGAAGCGGTGACAATTGAGATGAATGAGCCAGTGCAGCTTATTTTTGCATTGAACTACCTGAACTTCTTCACCAAAGCCACCCCTCTGTCCAAGACGGTCACTCTTAGCATGTCTGCAGATATTCCACTAGTGGTCGAGTACAAAATTGCAGACATGGGACACGTCAAATATTACCTGGCACCCAAGATCGATGAAGAATCATCCTAAATCCAAGTGCAAGACAGAAGTCTGTCAAGTGCAGAATTTTGGTGCGCATGTCTGAAGTTATTTGTTAAGATGTTTtgggaaaatgcattttactacTCTTCGTCTGCGGTGGTGTCTGGTTCAATGGATTCACAATTCTGTTACCATCTAAGCCATTTCATATGATTGGCAGATATATGGGCACGCTTAAACAATAGCAGTTTGGTACTTGGCTTTACCAGGCTCTGTGGGCTGAATCTAGAGTTGTTGTACTCTACTTTGGTCTAGTTTCATTTTCTTAATCTTTGTGCTCGCCTTCCTCCTTGACTCCACTTCTTGACTCCGGTTTTCGTCCAACTGCTCATTCCAGTATGTAGATAATTGTCTGTAAATATGCTAATTGGACACCGTTCATCCAgtcaaacattaataaaaggttttgtaatGA

Function

symbol description
pcna Predicted to enable DNA polymerase processivity factor activity. Acts upstream of or within response to activity and response to bacterium. Located in nucleus. Is expressed in several structures, including anterior neural tube; head; immature eye; nervous system; and pleuroperitoneal region. Orthologous to human PCNA (proliferating cell nuclear antigen).

NR:

description
PREDICTED: proliferating cell nuclear antigen

GO:

id name namespace
GO:0014823 response to activity biological_process
GO:0009617 response to bacterium biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0019985 translesion synthesis biological_process
GO:0006275 regulation of DNA replication biological_process
GO:0070557 PCNA-p21 complex cellular_component
GO:0043626 PCNA complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0030337 DNA polymerase processivity factor activity molecular_function

KEGG:

id description
K04802 PCNA; proliferating cell nuclear antigen

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250587.1 True 1468 mRNA 0.46 6 15862177 15864530

Neighbor

gene id symbol gene type direction distance location
LOC122352473 pim3,LOC107732271 coding downstream 12185 15847789 ~ 15849992 (-)
LOC122353200 pim3,LOC107732271 coding downstream 23797 15835096 ~ 15838380 (-)
LOC122353239 taar16f,LOC107758680,LOC107583443,LOC108191509,LOC107558088 coding downstream 40190 15820992 ~ 15821987 (-)
LOC122353102 LOC107558094,LOC107658523,LOC107730955,LOC107558078,LOC107558105,LOC107658550,LOC103911781 coding downstream 53120 15805107 ~ 15809057 (-)
LOC122353177 LOC107658523,LOC107730955,LOC107558094,LOC107558105,LOC107558078,LOC107658550,LOC103911781 coding downstream 61413 15799790 ~ 15800764 (-)
bmp1b LOC107688986,LOC107758677,LOC107583398,LOC107746216,LOC107658580,LOC107558131 coding upstream 7960 15872490 ~ 15890490 (-)
aak1b aak1b,LOC107583399,LOC107746214,LOC107658583,LOC107689018 coding upstream 67425 15931955 ~ 15958445 (-)
brf2 LOC107746211,LOC107658585,LOC107758611,LOC107558130,LOC107689884,LOC107682650 coding upstream 125063 15989593 ~ 15993972 (-)
rab11fip1b LOC107758672,LOC107689050,LOC107746209,LOC107583401 coding upstream 130382 15994912 ~ 16009528 (-)
gpat4 gpat4,LOC107746208,LOC107758670,LOC107689060,LOC107558124,LOC107658586,LOC107583403 coding upstream 156547 16021077 ~ 16029140 (-)
LOC122352598 pim3,LOC107732271 non-coding downstream 19640 15840351 ~ 15842537 (-)
LOC122352641 NA non-coding downstream 22111 15839513 ~ 15840066 (-)
LOC122352573 NA non-coding downstream 30251 15831207 ~ 15831926 (-)
LOC122352661 NA non-coding downstream 34621 15827084 ~ 15827556 (-)
G77715 NA non-coding downstream 214314 15644403 ~ 15647863 (-)
LOC122353197 NA non-coding upstream 38357 15902887 ~ 15912782 (-)
LOC122353198 NA non-coding upstream 50518 15915048 ~ 15917942 (-)
G77827 NA non-coding upstream 56391 15920921 ~ 15921360 (-)
G77830 NA non-coding upstream 62656 15927186 ~ 15927498 (-)
G77831 NA non-coding upstream 63562 15928092 ~ 15928317 (-)
G77702 NA other downstream 503945 15357685 ~ 15358232 (-)
LOC122352744 LOC107556605,LOC107709039,LOC107722845,LOC107690595,LOC107555077 other downstream 572505 15229969 ~ 15289672 (-)
G77671 NA other downstream 754425 15107137 ~ 15107752 (-)
vwa3a LOC107675622,LOC107552102,LOC107726804,LOC107717475 other downstream 1272278 14568330 ~ 14589899 (-)
im:6904045 NA other downstream 1376885 14484799 ~ 14485292 (-)
npffr1l1 npffr1l1,LOC107658551,LOC105907118 other upstream 28114 15892644 ~ 15897232 (-)
LOC122352931 LOC107758671,LOC107689893 other upstream 152141 16016671 ~ 16021774 (-)
cabp1b LOC107583405,LOC107746207,LOC107658587,LOC107758669,LOC107689072,LOC108440152,LOC103029522,LOC107373232,LOC102297829,LOC108232745,LOC103473718,LOC105890914,LOC107558082,LOC102200114 other upstream 165997 16030527 ~ 16057307 (-)
morn3 orai1b,morn3,LOC107746203,LOC107602056,LOC107689140,LOC107758661,LOC108425168,LOC107758660,LOC107683200 other upstream 307948 16172478 ~ 16177111 (-)
LOC122352830 LOC107689301,LOC107718705,LOC107602072,LOC107658608,LOC107658557,LOC107589035,LOC105888796,LOC106563065 other upstream 551378 16415908 ~ 16490354 (-)

Expression


Co-expression Network