LOC122352870


Basic Information

Item Value
gene id LOC122352870
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 5032154 ~ 5034484 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250596.1
TAAACGTAGGAGAAACAGCAGGAGAGCGAGCCGTCGGTGTAAGATGAAAACTGTGGAAACATTTCATCTGGCGTTACtgcgtattattattattattatcaaacgCGCGACTAGCTGAAGTGCACGAACAGCGCTCGGTTCCGTACGtgcatctataaaaaaaaaaagtttgcgaCTTTCATTTTTGATAGTTGTATGAAGATACTGGGAGATGCTGTCCACTCTCTCCTCTTTTCAGACTCAGTTAGCGTCCATCATGGAAGCGCTGGTGCAGACAGCTGTGTTAGAGATAGGCAAGCTCGTGGAGGTGGAGTGTGAAGTGTTGCTGTCGGAGGTCTCCCGCAGCCGCGGTGAGATCAGCTCTCTGAGGAGGACACTGAGGCTGATGGAGGTCCAGCCGCGGGAAAACACTGGGCAAACACCCACAGAGAGTTTGACATGTGTCAAGAGtGAACGTGGCCAAGAAGAGACGCACGGCCATTTGAACAAGTGTAGAGGCCCAAGAGAAGATCATCAAGACCAAGACAGTCCACAGCGGAGGTTTGAGGCAAGTACGGTGAAGCAGGAGCAACAGGAAGTGGATGTTTGGATTGGTCGAGACGACAGTGAAGCAGGAAGCCAGTGTGGCGAAGCCGTGAGCCTAATCAGGGATGCTCTCAAAACTGCTTCCCCCTCTACTTCCCCTGGCAGAGGAAGCAGAGAAAACGCGGCCGCGAGATTCCCGTCAACAGCAGAAGCGCCAGACGTGAACCGAGGCACCTCGCCGAACGGTGAACCGGACGCGCCGCGGAGTTTGAGCGCATCGGACCTCGCGAGAACAAACAGTGGCAGCGCTTTTTCGGCAGACAAGCGCTTCGTTTGCTCCTACTGTTCGAAGAGGTTCAGGTGTTTCAGTCAACTCACGATACATCAGCGGAGTCACACAGGCGAGAAGCCGTACCGGTGCACGCTCTGCGGAAAGAGGTACATTCAGAAAGGACACCTGTACACCCATCAGCGCACCCACACGGGGGAGAAGCCTTATCAGTGTTCGCTCTGCGGGAAAGGCTTCATTCAGAAATGCACTCTGGACATGCATCTGCGAAGtcacactggagaaaaaccCTACACTTGTACGAAATGCGGGAAAGGGTTCACGACCAAATTTAATCTTAACAAACACTTGTCGTGCCAGAGCTGCAACGGCATTAGTTAATGACGGTACGCTCGagtaaatgtaattgatttgcTCTCTTATGGTCACGGatcattaagaaaaatgtaataatccaCGTGGCGTCAGATCAGCATTAAAACCATGCCAGAA
>XM_043250597.1
TAAACGTAGGAGAAACAGCAGGAGAGCGAGCCGTCGGTGTAAGATGAAAACTGTGGAAACATTTCATCTGGCGTTACtgcgtattattattattattatcaaacgCGCGACTAGCTGAAGTGCACGAACAGCGCTCGGTTCCACTCAGTTAGCGTCCATCATGGAAGCGCTGGTGCAGACAGCTGTGTTAGAGATAGGCAAGCTCGTGGAGGTGGAGTGTGAAGTGTTGCTGTCGGAGGTCTCCCGCAGCCGCGGTGAGATCAGCTCTCTGAGGAGGACACTGAGGCTGATGGAGGTCCAGCCGCGGGAAAACACTGGGCAAACACCCACAGAGAGTTTGACATGTGTCAAGAGtGAACGTGGCCAAGAAGAGACGCACGGCCATTTGAACAAGTGTAGAGGCCCAAGAGAAGATCATCAAGACCAAGACAGTCCACAGCGGAGGTTTGAGGCAAGTACGGTGAAGCAGGAGCAACAGGAAGTGGATGTTTGGATTGGTCGAGACGACAGTGAAGCAGGAAGCCAGTGTGGCGAAGCCGTGAGCCTAATCAGGGATGCTCTCAAAACTGCTTCCCCCTCTACTTCCCCTGGCAGAGGAAGCAGAGAAAACGCGGCCGCGAGATTCCCGTCAACAGCAGAAGCGCCAGACGTGAACCGAGGCACCTCGCCGAACGGTGAACCGGACGCGCCGCGGAGTTTGAGCGCATCGGACCTCGCGAGAACAAACAGTGGCAGCGCTTTTTCGGCAGACAAGCGCTTCGTTTGCTCCTACTGTTCGAAGAGGTTCAGGTGTTTCAGTCAACTCACGATACATCAGCGGAGTCACACAGGCGAGAAGCCGTACCGGTGCACGCTCTGCGGAAAGAGGTACATTCAGAAAGGACACCTGTACACCCATCAGCGCACCCACACGGGGGAGAAGCCTTATCAGTGTTCGCTCTGCGGGAAAGGCTTCATTCAGAAATGCACTCTGGACATGCATCTGCGAAGtcacactggagaaaaaccCTACACTTGTACGAAATGCGGGAAAGGGTTCACGACCAAATTTAATCTTAACAAACACTTGTCGTGCCAGAGCTGCAACGGCATTAGTTAATGACGGTACGCTCGagtaaatgtaattgatttgcTCTCTTATGGTCACGGatcattaagaaaaatgtaataatccaCGTGGCGTCAGATCAGCATTAAAACCATGCCAGAA

Function

GO: NA

KEGG:

id description
ko03430 Mismatch repair

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250596.1 True 1306 mRNA 0.51 4 5032154 5034484
XM_043250597.1 False 1210 mRNA 0.52 5 5032154 5034484

Neighbor

gene id symbol gene type direction distance location
hint1 hint1,LOC107665476,LOC107684867 coding upstream 117539 4912471 ~ 4914615 (+)
ppp2cb ppp2cb,LOC107758729,LOC105021738 coding upstream 125886 4891590 ~ 4906268 (+)
LOC122353166 tex15,LOC107715856 coding upstream 144585 4866714 ~ 4887569 (+)
purg purg,LOC107715864,LOC107758727,LOC107564122,LOC107682501,LOC107102481 coding upstream 156493 4869185 ~ 4875661 (+)
fut10 fut10,LOC107681479,LOC107564112,LOC107740796 coding upstream 682454 4345213 ~ 4349700 (+)
LOC122352868 LOC107587995,LOC107711162,LOC107672432,LOC107757375,LOC107587996 coding downstream 549 5035033 ~ 5038505 (+)
LOC122352867 LOC107711243,LOC107672495,LOC107587952,LOC107757372,LOC107567248,LOC107670491 coding downstream 4362 5038846 ~ 5045538 (+)
si:dkey-210j14.3 LOC107672496,LOC107757375,LOC107711244,LOC107711245 coding downstream 11767 5046251 ~ 5049149 (+)
LOC122352997 LOC107711241,LOC107672456,LOC107588012,LOC107670466,LOC107757355,LOC107567234 coding downstream 24013 5058497 ~ 5067537 (+)
sppl3 sppl3 coding downstream 298526 5333010 ~ 5357455 (+)
G74889 colgalt1,LOC106607427,LOC106600909 non-coding upstream 11353 5019196 ~ 5020801 (+)
G74882 NA non-coding upstream 29712 5000682 ~ 5002442 (+)
G74873 NA non-coding upstream 82297 4949549 ~ 4949857 (+)
G74871 NA non-coding upstream 90852 4940998 ~ 4941302 (+)
G74870 NA non-coding upstream 104015 4927879 ~ 4928139 (+)
G74902 LOC107560569,LOC107739969 non-coding downstream 39444 5073928 ~ 5074206 (+)
G74906 NA non-coding downstream 52796 5087280 ~ 5087591 (+)
G74908 NA non-coding downstream 63160 5097644 ~ 5098564 (+)
G74914 NA non-coding downstream 73301 5107785 ~ 5108114 (+)
G74958 NA non-coding downstream 201115 5235599 ~ 5235955 (+)
LOC122352783 tln1,LOC107715875,LOC107670039,LOC107568645,LOC107702558 other upstream 503152 4481267 ~ 4529002 (+)
LOC122352388 tln1,LOC107715875,LOC107670039,LOC107568645,LOC107702558,LOC107737170 other upstream 911707 4013034 ~ 4120447 (+)
cdc42se2 cdc42se2 other upstream 1337558 3669003 ~ 3694596 (+)
zgc:113274 LOC107715885,LOC107702590,LOC107720383,LOC107560406 other upstream 1364148 3663912 ~ 3668006 (+)
si:ch73-234b20.5 si:ch73-234b20.5,LOC107702596,LOC107558257,LOC107653492,LOC107573851,LOC107732123,LOC108440734 other upstream 1427938 3596606 ~ 3604216 (+)
LOC122352404 LOC107670527,LOC107567246,LOC107587997,LOC107757377,LOC107711240,LOC107672489 other downstream 82382 5116866 ~ 5123373 (+)
LOC122352567 ywhah,LOC107562560,LOC107744159,LOC107713377,LOC107555530,LOC107688000 other downstream 203795 5238279 ~ 5250137 (+)
G74965 NA other downstream 222354 5256838 ~ 5258823 (+)
ccl19b LOC107744181,LOC107677997,LOC107567444,LOC107555521,LOC107713300,LOC107688602,LOC107713257 other downstream 464163 5498647 ~ 5500388 (+)
G75062 LOC107744182,LOC107678054,LOC107567441,LOC107713390,LOC107687817 other downstream 526167 5560651 ~ 5562085 (+)

Expression


Co-expression Network