sparta (spg20,LOC107728829,LOC107589828,LOC107577790,LOC107697408)


Basic Information

Item Value
gene id sparta
gene name spg20,LOC107728829,LOC107589828,LOC107577790,LOC107697408
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 13538156 ~ 13543615 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250606.1
TGGTGACAAAGTAGGTACATAATTTCGTCGTGTGTCATGGGAGGGATATCAAACTTAACCGCGGACGTTTTCTAGTTGCCGTTTTTCACTTAAGGGTTGCttatatttacttttcttgGCACCAGAATGGAGTCACCAGAACCGTCTGAAATCCGCGCCATTCGTGAGAGCTATAAACAAGCCCTGCGGTGTCTGAACTCGGGGCTTCAGTATGACGAGGTGGGGAATAAGGACCAAGCTCTTCTTTTGTACAAACTGGGCAAGCGGCATCTCCTCAGAGGGCTCGAGGTGAACACGCGAGGCAAGCGCTGCGTCGGACGCCGCTGGGACTTCGCGCGACAGACGCAGCTGAGGATGAACGAGACTTTGAGGACCATAACCGATCGTCTCGAGGTGCTGGAGTCCACAGCGAGCTCGGGTCAGCGCCTTTATCCGACCCTTCCTGCCGTTACCACCAGAGTACCTGTCTCCGCTTCAGGGGGGGCCTCTGCTCATCCTGCCTCCCCTATGGAGGGCTTCGCTGCACCCGCTGAACTTCCACCAGCCTACACTCCACGACCGACAGAAGGGCATCTGTCACTCTCTCATGGAGGCAACGGGCCGTTTCAAACTGCTCCAGACCAGACAGCCCAACGCCAGGCCTTTGCCCCAGTCAATCTCAGAGAGACTGGCATGGAGATTTTGTTCTTGCCCAGTGGGGTGCAGATGTTCTTCGTTTCTGCTGAGGGTCATGTCAGCGCCCCTTCTTATCCAGGGTACCTGCGAATAATCATATACAACAGCCAGAACAGTAATGCCAGCTATGCCCCAGCATACCTACAGGTTTGTGATTGGATCTACCCGCTGTACCCAGACTCACCGGTCTTTCTTAGCAACAAAGGTGTGTTCACGTTTCCTGATTCCACCGCAGCAGTGCCGGGGTCCTATGTTGGGGTGGTGCTGTCCTCAGAGCTGCCTGCAGCAGACAGGCATCTGTTCCAGGAACAGCTGTCGGCGCTGGCACAGCTCAGGATCCAGGTAGATGAAGGTGGCGCTACAGGAACAGACATTAACCTGAGTGGAAAGGTTCCTCCTTCAGAAACATCTGTAACCCAAACACCAGGAGGGGAGGATAAAACTGTTCCTGTTTGGAGTGAAAAAATGTCTCAAAGTATTCTAGCAGGGACCTCCTGGTTGGGTCGGGGGCTAGTGCGAGGAGCTGAAGCTACTGGTAAAGCCATCCAGAGAGGAGCAACTAAGCTACGCGAAAACATCACTCCAGAGGAGACCCCAGCAGAGGTCAGCCCCAAGGTCACCAAAGGCCTTAATGCAGCCAAGCAGGCCACAGGGGGTGCTGTGAAAGTCAGCCAGTTTCTAGTGGACGGCGTCGCTGCTGTAGCTGATAGAGTTGGGAAAGAAATTGCTCCACACGTGAAAAAACATGGCAGCAAACTCATCCCAGAATCTCTCAAGAAAAGTAAAGACGGCTGCTCCAGCATGGATGGAGCCAAGCTTGTGGCAGGAAGCAGCAtacaagGTTTGTCAACTCTCTGGTCAAGTCTGGAAACGGCCGCAAAGACTATTGGCAAAAGTATTACTTCAGAGACTGTGACTACTGTGAAGCAcaaGTATGGAGACGAGGCAGGACAAGCTGCAGACACTGCGGTCCAGTCTGCTGTCAATGTAGGTGTCACAGCATTTAATGTGGACAACCTGGGCATCAAGGGTGTGCTGAAGACCGCAGGCAAACACACTGCAAAAGCAATGGTGAAAGATGGCCCAGGAGGAGAAGAAACcgagaagaaagaaaagccaAATAAGgatgagaaaaaataataaatcattagcTGTCATCAGTTAACTTCTGTACATTCTTGCAgcaaaaaagtattgttttgtaTTGATAATGAGATTGATATATTATACTGAGCAATGTTTACCGAACGATGCACTTAGACATGTATTACTTAAATGTTATACTCCTGATAAAGTTCTTTATTTTCTTAGATATTAAGATGGTTATATTTATAGAAAGACTTGACCTTGTTCGAATGTTTATTTCACAAGTATTTCTGATTTTCgtaagtacattttatattctgCATTCAGATGCATTAAGATGAGAACTTGAGAAATGAACTTCATTATACTCTATTACCGTTTTTGACATTGTTGTGgcttatattttacaaaaaaaatggccCAATTAAAggccaaatttttttttgatgtacaaatatcaaaaatgtaaaaggtgTGCATTATAGTTGACAGCTAGATGAACACTTTACGGTTATAGGAAAGTTATTTTCAAATTTGCATTTGAGCCCATTCTGTAGTAAA
>XR_006251934.1
TGGTGACAAAGTAGGTACATAATTTCGTCGTGTGTCATGGGAGGGATATCAAACTTAACCGCGGACGTTTTCTAGTTGCCGTTTTTCACTTAAGGGTTGCttatatttacttttcttgGCACCAGAATGGAGTCACCAGAACCGTCTGAAATCCGCGCCATTCGTGAGAGCTATAAACAAGCCCTGCGGTGTCTGAACTCGGGGCTTCAGTATGACGAGGTGGGGAATAAGGACCAAGCTCTTCTTTTGTACAAACTGGGCAAGCGGCATCTCCTCAGAGGGCTCGAGGTGAACACGCGAGGCAAGCGCTGCGTCGGACGCCGCTGGGACTTCGCGCGACAGACGCAGCTGAGGATGAACGAGACTTTGAGGACCATAACCGATCGTCTCGAGGTGCTGGAGTCCACAGCGAGCTCGGGTCAGCGCCTTTATCCGACCCTTCCTGCCGTTACCACCAGAGTACCTGTCTCCGCTTCAGGGGGGGCCTCTGCTCATCCTGCCTCCCCTATGGAGGGCTTCGCTGCACCCGCTGAACTTCCACCAGCCTACACTCCACGACCGACAGAAGGGCATCTGTCACTCTCTCATGGAGGCAACGGGCCGTTTCAAACTGCTCCAGACCAGACAGCCCAACGCCAGGCCTTTGCCCCAGTCAATCTCAGAGAGACTGGCATGGAGATTTTGTTCTTGCCCAGTGGGGTGCAGATGTTCTTCGTTTCTGCTGAGGGTCATGTCAGCGCCCCTTCTTATCCAGGGTACCTGCGAATAATCATATACAACAGCCAGAACAGTAATGCCAGCTATGCCCCAGCATACCTACAGGTTTGTGATTGGATCTACCCGCTGTACCCAGACTCACCGGTCTTTCTTAGCAACAAAGGTGTGTTCACGTTTCCTGATTCCACCGCAGCAGTGCCGGGGTCCTATGTTGGGGTGGTGCTGTCCTCAGAGCTGCCTGCAGCAGACAGGCATCTGTTCCAGGAACAGCTGTCGGCGCTGGCACAGCTCAGGATCCAGGTAGATGAAGGTGGCGCTACAGGAACAGACATTAACCTGAGTGGAAAGGTTCCTCCTTCAGAAACATCTGTAACCCAAACACCAGGAGGGGAGGATAAAACTGTTCCTGTTTGGAGTGAAAAAATGTCTCAAAGTATTCTAGCAGGGACCTCCTGGTTGGGTCGGGGGCTAGTGCGAGGAGCTGAAGCTACTGGTAAAGCCATCCAGAGAGGAGCAACTAAGCTACGCGAAAACATCACTCCAGAGGAGACCCCAGCAGAGGTCAGCCCCAAGGTCACCAAAGGCCTTAATGCAGCCAAGCAGGCCACAGGGGGTGCTGTGAAAGTCAGCCAGTTTCTAGTGGACGGCGTCGCTGCTGTAGCTGATAGAGTTGGGAAAGAAATTGCTCCACACGTGAAAAAACATGGCAGCAAACTCATCCCAGAATCTCTCAAGAAAAGTAAAGACGGCTGCTCCAGCATGGATGGAGCCAAGCTTGTGGCAGGAAGCAGCAtacaagGTTTGTCAACTCTCTGGTCAAGTCTGGAAACGGCCGCAAAGACTATTGGCAAAAGTATTACTTCAGAGACTGTGACTACTGTGAAGCAcaaATTTAGGGGTCTAGGAAGCCTCTTGGACCCCCCCTAGCAACATATAAATGGTGGCGGGTAAAAATACACTGCGTTTTCTCTCACTAATGTCTCTGTGAAATTTAAACCTCCCCAAAGTGCCTTATTTTCTTGAGTTGCTGAGAAGGTGCTATTCTTATTACTGGTCTGTCAGAGTGCTTTGCGAATTAAAACTGAGGTATGGAGACGAGGCAGGACAAGCTGCAGACACTGCGGTCCAGTCTGCTGTCAATGTAGGTGTCACAGCATTTAATGTGGACAACCTGGGCATCAAGGGTGTGCTGAAGACCGCAGGCAAACACACTGCAAAAGCAATGGTG

Function

symbol description
spg20 Predicted to enable ubiquitin protein ligase binding activity. Acts upstream of or within several processes, including adipose tissue development; negative regulation of BMP signaling pathway; and negative regulation of collateral sprouting in absence of injury. Located in lipid droplet and synapse. Is expressed in dorsal root ganglion; olfactory epithelium; and trigeminal ganglion. Used to study Troyer syndrome. Human ortholog(s) of this gene implicated in Troyer syndrome. Orthologous to human SPART (spartin).

NR:

description
spartin

GO: NA

KEGG:

id description
K19366 SPG20; spartin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250606.1 True 2322 mRNA 0.47 7 13538156 13543615
XR_006251934.1 False 1945 transcript 0.52 8 13538729 13543615

Neighbor

gene id symbol gene type direction distance location
ccdc169 LOC107686219,LOC107728839,LOC107589822 coding downstream 188 13533751 ~ 13537968 (-)
rfc3 rfc3,LOC107589808,LOC107728889,LOC107577751,LOC107691679 coding downstream 214267 13319875 ~ 13323889 (-)
zar1l zar1l,LOC107686155,LOC107589787,LOC107728846,LOC107734432,LOC107691709,LOC107577757 coding downstream 227081 13309532 ~ 13311075 (-)
hunk hunk,LOC107686151,LOC107728887,LOC107734458,LOC107577711,LOC107691675,LOC107588971 coding downstream 351965 13178586 ~ 13186191 (-)
eva1c LOC107686146,LOC107588947,LOC107728854,LOC107734450,LOC107691670,LOC107577635 coding downstream 368941 13164709 ~ 13169215 (-)
ccna1 ccna1,LOC107728895,LOC107686159 coding upstream 429 13544044 ~ 13546323 (-)
smad9 smad9,LOC107728873 coding upstream 14863 13558478 ~ 13565616 (-)
alg5 alg5,LOC107728859,LOC107697411,LOC107589073,LOC107577823 coding upstream 22929 13566544 ~ 13571292 (-)
supt20 supt20h,supt20,LOC107728858,LOC107589048,LOC107697409 coding upstream 30816 13574431 ~ 13588126 (-)
c10h21orf91 zgc:110006,LOC107697414,LOC107734464,LOC107686165,LOC107589110,LOC107728860 coding upstream 45694 13589309 ~ 13608152 (-)
G77284 NA non-coding downstream 49323 13486267 ~ 13488833 (-)
G77245 NA non-coding downstream 209263 13328642 ~ 13328893 (-)
G77220 kl,LOC107577734,LOC107589796,LOC107728890 non-coding downstream 222582 13313194 ~ 13315574 (-)
G77208 NA non-coding downstream 327210 13210616 ~ 13210946 (-)
G77157 NA non-coding downstream 502571 13033741 ~ 13035585 (-)
LOC122352841 NA non-coding upstream 4639 13548254 ~ 13556657 (-)
G77294 NA non-coding upstream 11941 13555556 ~ 13556192 (-)
G77315 NA non-coding upstream 126357 13669972 ~ 13670446 (-)
G77349 NA non-coding upstream 247706 13791321 ~ 13791934 (-)
G77347 NA non-coding upstream 256398 13800013 ~ 13800912 (-)
dclk1a dclk1a,dclk1,LOC107588999,LOC107728871,LOC107577778 other downstream 5092 13492273 ~ 13533064 (-)
mogat2 mogat2,LOC107751377,LOC107691703,LOC107747029,LOC107686211,LOC107589716,LOC107579037 other downstream 749061 12782353 ~ 12789095 (-)
uvrag uvrag,LOC107691651,LOC107577365,LOC107686127,LOC107751378,LOC107589407 other downstream 768739 12678990 ~ 12769417 (-)
ccdc83 NA other downstream 1953196 11505310 ~ 11584960 (-)
LOC122352715 LOC107693960,LOC107747020,LOC107744618,LOC107699265 other downstream 2330904 11176569 ~ 11207252 (-)
ypel2a LOC106603438,LOC106931471,LOC106940241,LOC101067200,LOC107659943 other upstream 99569 13643184 ~ 13654413 (-)
ovca2 ovca2,LOC107697430,LOC107743470,LOC107728834 other upstream 262489 13806104 ~ 13807819 (-)
G77440 dlg1,LOC107738847,LOC107659037 other upstream 658647 14202262 ~ 14204127 (-)
G77441 dlg1l,LOC107653521,LOC107705307,LOC107660320 other upstream 660801 14204416 ~ 14208006 (-)
G77443 NA other upstream 690891 14234506 ~ 14264322 (-)

Expression


Co-expression Network