ccdc169 (LOC107686219,LOC107728839,LOC107589822)


Basic Information

Item Value
gene id ccdc169
gene name LOC107686219,LOC107728839,LOC107589822
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 13533751 ~ 13537968 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250607.1
ACAggaattacagtatattttcccaaatctgaaaaatgtaaaaggtgTGCATCATAGCTGACACCTAGATGAACACTTTACGGTGTGTTTTATGATTACTAAATCAAAGTAGACTGAAGGGTATTGAAAAGATCGCCGCACAATGGGACTCAACGTGTTGTTCGTTCCCGTGGATACAGCCCAACAATCACAAAGACACCGATGAAAGCCGAACCTGCTTATTATTCAGGATGGAAGAAACAGACCTCAGAAATTATGAGTTATCCCAACTGCAAGCAGAAGTCGAGCAGGAGAGAGAGGTCAAGGAGATGTTAAAGGACTCCGTGTCTGATCTGAGGAGCACACTGGCCGATTTGGAGAACAGACTTCGTAATGTCGATGGAGAAGAGAACGAGTGGAGAACCAGATATGAGACACAGCTGGAGCTGAACGAGCAGCTGGAGAAACAAATCCGAGTCGCTCGAGAGAGACTCGAGACCCTCCGCGGTGACCCCTCAGATCGACTGGCTTCTATTCGCTCATATGATGAAATGTCAGAGgATGCTCTCAGACGGAGATTGAAATTGCTGTCTACTGAGAAGTGCAGCCTTCAATCCCAACTGAAGGATTTCCAAATGAGAATTGTGCAGGAGGGAAAGACTTACCAGAAAGTCTACGAAGAGAGGCGGGCGTATCTTGCTGAGATCGCAAAGCTGTCTTCAACTGTGGATGTGAGCAGAAAGCAGCATACGGTTCAAGCCTGGAGGACAGCGCTGGGTCCAGACAAAATCAGAGGCCAGGAGAGTAAGAGGCAACATTCAAACATGATGCAGGGGGCTGTCAAAAAAGCACCAGCAAGGAGTCGTCTACCTcgattaaaacattaattccATTCAGGGTGTCCATCAGCTATTGTTtgataatttttgtttaatttttcttttattcttttttttaagaacagtAAAATGAAGCATAATCTTTGAGTTCATAGACCTAGCTTGATAGAGGCCACTTTGAAcagcctaataataataataataaaaaaatacagttaggttatttttaggttaattacagtttggtttattttattgggTTTCATCTTATCATTTCAGGGTGAAACAATGTTAAGTCAGTGTTTATGTGTCAGTGCTAAGTGCAttgaattaatattacataGTGATATTGGTTTTATAgcattattaatgttgaaacaaTGGGAAAATGGTAATGTCACTGAATCAACATTATGAAGTAATGATTGTAATCATCACATGTTCACCTTCagttaatgtttcattttcataaaaactacaacaacaacaacaacaataacaaacaataaCATGTAACTGAATCAGTGTTACACTGTGATATTCTACTGTTATGCACAATATTAACTGTTGTTgagtcaatataaaaaataggaTGTGATTTAAACTGTATGTTCATTataaaccactttaaaaaaaataaaataaaaaaa
>XM_043250608.1
ACAggaattacagtatattttcccaaatctgaaaaatgtaaaaggtgTGCATCATAGCTGACACCTAGATGAACACTTTACGGTGTGTTTTATGATTACTAAATCAAAGTAGACTGAAGGGTATTGAAAAGATCGCCGCACAATGGGACTCAACGTGTTGTTCGTTCCCGTGGATACAGCCCAACAATCACAAAGACACCGATGAAAGCCGAACCTGCTTATTATTCAGGATGGAAGAAACAGACCTCAGAAATTATGAGTTATCCCAACTGCAAGCAGAAGTCGAGCAGGAGAGAGAGGTCAAGGAGATGTTAAAGGACTCCGTGTCTGATCTGAGGAGCACACTGGCCGATTTGGAGAACAGACTTCGTAATGTCGATGGAGAAGAGAACGAGTGGAGAACCAGATATGAGACACAGCTGGAGCTGAACGAGCAGCTGGAGAAACAAATCCGAGTCGCTCGAGAGAGACTCGAGACCCTCCGCGGTGACCCCTCAGATCGACTGGCTTCTATTCGCTCATATGATGAAATGTCAGAGgATGCTCTCAGACGGAGATTGAAATTGCTGTCTACTGAGAAGTGCAGCCTTCAATCCCAACTGAAGGATTTCCAAATGAGAATTGTGCAGGAGGGAAAGACTTACCAGAAAGTCTACGAAGAGAGGCGGGCGTATCTTGCTGAGATCGCAAAGCTGTCTTCAACTGTGGATGTGAGCAGAAAGCAGCATACGGTTCAAGCCTGGAGGACAGCGCTGGGTCCAGACAAAATAGGCCAGGAGAGTAAGAGGCAACATTCAAACATGATGCAGGGGGCTGTCAAAAAAGCACCAGCAAGGAGTCGTCTACCTcgattaaaacattaattccATTCAGGGTGTCCATCAGCTATTGTTtgataatttttgtttaatttttcttttattcttttttttaagaacagtAAAATGAAGCATAATCTTTGAGTTCATAGACCTAGCTTGATAGAGGCCACTTTGAAcagcctaataataataataataaaaaaatacagttaggttatttttaggttaattacagtttggtttattttattgggTTTCATCTTATCATTTCAGGGTGAAACAATGTTAAGTCAGTGTTTATGTGTCAGTGCTAAGTGCAttgaattaatattacataGTGATATTGGTTTTATAgcattattaatgttgaaacaaTGGGAAAATGGTAATGTCACTGAATCAACATTATGAAGTAATGATTGTAATCATCACATGTTCACCTTCagttaatgtttcattttcataaaaactacaacaacaacaacaacaataacaaacaataaCATGTAACTGAATCAGTGTTACACTGTGATATTCTACTGTTATGCACAATATTAACTGTTGTTgagtcaatataaaaaataggaTGTGATTTAAACTGTATGTTCATTataaaccactttaaaaaaaataaaataaaaaaa

Function

NR:

description
PREDICTED: coiled-coil domain-containing protein 169-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250607.1 True 1468 mRNA 0.38 8 13533751 13537968
XM_043250608.1 False 1465 mRNA 0.38 8 13533751 13537968

Neighbor

gene id symbol gene type direction distance location
rfc3 rfc3,LOC107589808,LOC107728889,LOC107577751,LOC107691679 coding downstream 209862 13319875 ~ 13323889 (-)
zar1l zar1l,LOC107686155,LOC107589787,LOC107728846,LOC107734432,LOC107691709,LOC107577757 coding downstream 222676 13309532 ~ 13311075 (-)
hunk hunk,LOC107686151,LOC107728887,LOC107734458,LOC107577711,LOC107691675,LOC107588971 coding downstream 347560 13178586 ~ 13186191 (-)
eva1c LOC107686146,LOC107588947,LOC107728854,LOC107734450,LOC107691670,LOC107577635 coding downstream 364536 13164709 ~ 13169215 (-)
si:dkey-18a10.3 LOC107588952,LOC107686147,LOC107735317 coding downstream 372232 13156144 ~ 13161519 (-)
ccna1 ccna1,LOC107728895,LOC107686159 coding upstream 6076 13544044 ~ 13546323 (-)
smad9 smad9,LOC107728873 coding upstream 20510 13558478 ~ 13565616 (-)
alg5 alg5,LOC107728859,LOC107697411,LOC107589073,LOC107577823 coding upstream 28576 13566544 ~ 13571292 (-)
supt20 supt20h,supt20,LOC107728858,LOC107589048,LOC107697409 coding upstream 36463 13574431 ~ 13588126 (-)
c10h21orf91 zgc:110006,LOC107697414,LOC107734464,LOC107686165,LOC107589110,LOC107728860 coding upstream 51341 13589309 ~ 13608152 (-)
G77284 NA non-coding downstream 44918 13486267 ~ 13488833 (-)
G77245 NA non-coding downstream 204858 13328642 ~ 13328893 (-)
G77220 kl,LOC107577734,LOC107589796,LOC107728890 non-coding downstream 218177 13313194 ~ 13315574 (-)
G77208 NA non-coding downstream 322805 13210616 ~ 13210946 (-)
G77153 NA non-coding downstream 430692 13021653 ~ 13103059 (-)
LOC122352841 NA non-coding upstream 10286 13548254 ~ 13556657 (-)
G77294 NA non-coding upstream 17588 13555556 ~ 13556192 (-)
G77315 NA non-coding upstream 132004 13669972 ~ 13670446 (-)
G77349 NA non-coding upstream 253353 13791321 ~ 13791934 (-)
G77347 NA non-coding upstream 262045 13800013 ~ 13800912 (-)
dclk1a dclk1a,dclk1,LOC107588999,LOC107728871,LOC107577778 other downstream 687 13492273 ~ 13533064 (-)
mogat2 mogat2,LOC107751377,LOC107691703,LOC107747029,LOC107686211,LOC107589716,LOC107579037 other downstream 744656 12782353 ~ 12789095 (-)
uvrag uvrag,LOC107691651,LOC107577365,LOC107686127,LOC107751378,LOC107589407 other downstream 764334 12678990 ~ 12769417 (-)
ccdc83 NA other downstream 1948791 11505310 ~ 11584960 (-)
LOC122352715 LOC107693960,LOC107747020,LOC107744618,LOC107699265 other downstream 2326499 11176569 ~ 11207252 (-)
sparta spg20,LOC107728829,LOC107589828,LOC107577790,LOC107697408 other upstream 188 13538156 ~ 13543615 (-)
ypel2a LOC106603438,LOC106931471,LOC106940241,LOC101067200,LOC107659943 other upstream 105216 13643184 ~ 13654413 (-)
ovca2 ovca2,LOC107697430,LOC107743470,LOC107728834 other upstream 268136 13806104 ~ 13807819 (-)
G77440 dlg1,LOC107738847,LOC107659037 other upstream 664294 14202262 ~ 14204127 (-)
G77441 dlg1l,LOC107653521,LOC107705307,LOC107660320 other upstream 666448 14204416 ~ 14208006 (-)

Expression


Co-expression Network