hmgcs1 (hmgcs1,LOC107715876,LOC107737058)


Basic Information

Item Value
gene id hmgcs1
gene name hmgcs1,LOC107715876,LOC107737058
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 4001799 ~ 4009370 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250610.1
GAGACGCGTTCCTGCGTAAGCGGAAGGTCCGTCCCCATATACTGCTCGGCTGCACACATACCAAATATCTGACCTTATGAGATCTACGGACGGGGCAGCTCTCCGATTCTGACAGCCCGGCTATAGAAACTAATATATGATTGTAAGTCCGTTCAGGATGCCTGGATCACTCCCTGCTGTTTGTGAGGCCTCGTGGCCCAAGGACGTGGGCATCGTGGCCATGGAGGTGTATGTGCCGTCTCAGTATGTGGAGCAAGCGGAGCTGGAAGAGTACGACGGAGTCGGAGCGGGGAAATACACCGTGGGACTGGGCCAGGCGCGCATGGGATTCTGCTCGGACCGCGAGGACATCAACTCTCTGTGTCTGACGGTGGTCCAGCGGTTGATGGAGCGCAGCGGCCTGTCCTACCAGAGCGTGGGCCGGCTGGAGGTGGGCACGGAGACCATCATCGACAAGTCCAAGTCCACCAAGACCGTCCTGATGCAGCTGTTCGAGGAGTCGGGCAACACTGACGTGGAGGGAGTAGACACCACTAACGCCTGCTACGGAGGAACCGCTGCGCTTTTCAATGCCGTCAACTGGGTGGAGTCCAGCTCCTGGGACGGTCGTTATGCTCTGGTGGTTGCGGGTGACATTGCCGTTTATGCGACGGGCAGCGCCAGGCCGACGGGGGGAGCCGGAGCTGTGGCCATGCTAGTCGGACCCAACGCTCCTCTGGCCTTCGAGAGAGGGCTTCGAGGGACACATATGCAACACGCGTATGATTTTTATAAGCCAGATATGGTGTCTGAGTATCCAGTGGTGGACGGCAAGCTTTCCATCCAGTGTTACCTCAGTGCTTTAGATCGCTGCTACTCTGTCTACAGGAACAAGATCCATGCCCAGTGGCAGAGAGagGGTCTCGACAAGCGTTGCGGTCTTGAAGACTTCGGCTTCATGGTGTTTCACTCTCCTTACTGTAAACTGGTGCAGAAGTCTTTGGCTCGACTAATGCTCAACGATTTCCTCTGTCATCCCAGTCCAAACACAGAGAGCGGGCCCTTCGGCGGACTGGAAGCTTTCAGAGATGTGAAGATCGAGGACACTTATTTTGACCGAGACGTGGAGAAGGCCTTTATGAAGGCCAGCACGGAAGTGTTTGAGGAAAAGACGAAGGCGTCTCTCCTCATATCAAACCAGAATGGTAACATGTACACGCCATCGGTGTACGGCTGCTTGGCTTCGGTTCTCGCACAACATACTCCTCAGCAGTTGGCAGGACAGAGAATCGGTGTGTTTTCGTACGGCTCGGGCTTTGCTGCTACGCTCTACTCCGTCAAAGTCACACAAGACGCTACGCCTGgATCTTCTCTGGATAAGTTGGTCTCCAGCCTGTGTGATTTGCAGGCCAGGCTGGATTCTAGAAAGAAGGTTTCGCCGGATGTTTTTGCCCAGAACATGAAGCTAAGAGAAGAAACCCACCATTTAGCAAACTACATCCCTCAGGGCCCGGTAGATGAACTCTTCCCAGGAACGTGGTACCTCACTCGTGTGGACGAGAAGCATCGCAGGCAGTACGCCAGACGCTCGATGAACGATGACAGACCGCTGGAGGCCGGACCGGTCAGTTCCAGCATTGCACCCGAGcATATTCCCAGTCCGCTCAAGAAGATGCCCCGCATCCCGACTGCCACAGCTGGCTCTGAGGTGCTCATTAGTAACGGGGATCATTAAGTTTACCTCTGTGAGGTGCACACCATGGCAGGTCACATTGAGGACGCTGATCTGTAAAACGACACGGTAAAAAGGGCCCCGGGAATCCTGCAGCCAGATCACTTATCAATGAGTGATACGAACCTCAAAGCTTTTTAATGTTCCAGGACAGACTCCGCTCGACCGTCACTGTGCTGAAGATGGCAGAGGGTAGTTTGGAAATGAAGTGTTTCTCTGTGGTGAGCTCCCACAAACTGCTGCTCACAGTCGTCTATGCAGAAATCCTGAATTGTTCATTCTTTTAAGTCCAAATATCTACCTGTTGGCATTTCACAGGCTCcatgctgtctttttttttttttttttttaagcattaaactAACCGTGTCATTCAAAACAGACATTTAGGAGAAAACATGGATGTCTTGAAGCAGAGCATcccttgttgtttttaattgatcaaCGCTGTTTCTATGTCTTcgtctttttttgcttttataaaactcCTTTCTAGTCGGTCTTACCACCATGGCCATGTCAGGGAAATGTGCCTGGATCGCATATTAATGAGCCATAAGctttacaaattttaattacGTTCACCTGTCTAGTAATAATTGTTTAGTCGCTGCTAAACGGCTTCTGTTAGCGTTCATGTCCTTGGAAATGagtatcatttatttgattttcattCTAGCCAAAGTAGATGGTGTTCGTTTCTGAACTCCAATGAGGaaatacatttgtgtaaaaGATAAAAACGTGATGACTTAGTGGCAACGTGTTATAGCtattaaacaatataatcaGTTAAACTGGTaacatatttttggaaaaaagccAGTTTTGAGGATGAAAGTGAGTGAGAAAAGAGCACTTGATTGGCTGATTGTCAGCTGtccacctaaaaataaaaactgtcatttacttaccctcattcACTCCAAACCGATACGcactaaaatatacaaaaaaaaatatatatatataattttccaAGAGACTTTAGTACCTTAAGGGTCCTATTGGTATGTATATAGTACATATAAGTACAAATGAGTAGAtagaaatacatattaataccCCAAAAGGCTctctagcttttttttattgtttataggACTAACCATCTTCTGTGCAGCAATAAAAGATAgaattttgagaaatgttggCAACTAAAGAGACCTAGTTCCCATTGACTTTCAatgtatggacaaaaaataaataaaataatcaatggGAACTGAAACTTTTTGGTTATTCTTCACAATATCTTTCATGATACACAGAAAAATCGGTTATGGAGGTTTGCAAGAAcacgagagtgagtaaatgatgacagatgtttaatttttgggtgaactgtgcctttaacTCGCTCTTTATTTGTAGATCACAACTAACTCTTAATATTCCTTGAACTGTTAAGAAATTGCAATCCGAAGAATCTTATGTGATCAAATGTTTGACCTGTGATTGTTCCAAACTACAGAGCACTTCTCAGTAATGATACAGCTTATTTAGAGATTTATCGatttcaaatttataaaagAAGCAATATCAATACTACGGTATTGTAAATGTTAGCACCTTGAAGCTAAATGTTTAGTGGCGGATATATACTAagccaaaagcaaaaaaaaaaagattttatcaGAAAGAATTTATGCTTGATTGCAAAAACACTGATAGCAAGATGGTATTTCCTTTCGGAACATTCTTCAATTTGTGGGTCCATGTTAACACTTCTGCTAATTCATCAACTTTGAGAAGCCTTATTCTGAGCATGTAcagaacacacaaatatattctGAAACTGTATAGagatatatttctttttcattctgcTGCCAGGACATTTTGACTGTAGAGTTATAACTTGAAACGGCCAATGTTTACAAGATGTCTCCCTCAGATCGGTTCATACCAATAATTGGTAAGTAATGTACAGCGCTAACTTATATTTTGTAGGTGGACAAAAACCGCTATGCGATCAGGTGTGATGTGCAGAAAACAAGCTGTAAAGACGATGTGTATCTGATAATATATGAACTGAGGAttaaatgttgatttgctgAA
>XM_043250611.1
TTTGATTGGCTGCGTGAAAAGCGCTCAAGAAACAGAAGCGCGCTCTGCACAGGTATCGTCCGCTTACCGTGTATAAATAGTATGTCTTTAATACCGCGTTCAACAAGCTGCTGTCACCTAAAGAACTGAACCCAGCTGTATAGTCCGTTCAGGATGCCTGGATCACTCCCTGCTGTTTGTGAGGCCTCGTGGCCCAAGGACGTGGGCATCGTGGCCATGGAGGTGTATGTGCCGTCTCAGTATGTGGAGCAAGCGGAGCTGGAAGAGTACGACGGAGTCGGAGCGGGGAAATACACCGTGGGACTGGGCCAGGCGCGCATGGGATTCTGCTCGGACCGCGAGGACATCAACTCTCTGTGTCTGACGGTGGTCCAGCGGTTGATGGAGCGCAGCGGCCTGTCCTACCAGAGCGTGGGCCGGCTGGAGGTGGGCACGGAGACCATCATCGACAAGTCCAAGTCCACCAAGACCGTCCTGATGCAGCTGTTCGAGGAGTCGGGCAACACTGACGTGGAGGGAGTAGACACCACTAACGCCTGCTACGGAGGAACCGCTGCGCTTTTCAATGCCGTCAACTGGGTGGAGTCCAGCTCCTGGGACGGTCGTTATGCTCTGGTGGTTGCGGGTGACATTGCCGTTTATGCGACGGGCAGCGCCAGGCCGACGGGGGGAGCCGGAGCTGTGGCCATGCTAGTCGGACCCAACGCTCCTCTGGCCTTCGAGAGAGGGCTTCGAGGGACACATATGCAACACGCGTATGATTTTTATAAGCCAGATATGGTGTCTGAGTATCCAGTGGTGGACGGCAAGCTTTCCATCCAGTGTTACCTCAGTGCTTTAGATCGCTGCTACTCTGTCTACAGGAACAAGATCCATGCCCAGTGGCAGAGAGagGGTCTCGACAAGCGTTGCGGTCTTGAAGACTTCGGCTTCATGGTGTTTCACTCTCCTTACTGTAAACTGGTGCAGAAGTCTTTGGCTCGACTAATGCTCAACGATTTCCTCTGTCATCCCAGTCCAAACACAGAGAGCGGGCCCTTCGGCGGACTGGAAGCTTTCAGAGATGTGAAGATCGAGGACACTTATTTTGACCGAGACGTGGAGAAGGCCTTTATGAAGGCCAGCACGGAAGTGTTTGAGGAAAAGACGAAGGCGTCTCTCCTCATATCAAACCAGAATGGTAACATGTACACGCCATCGGTGTACGGCTGCTTGGCTTCGGTTCTCGCACAACATACTCCTCAGCAGTTGGCAGGACAGAGAATCGGTGTGTTTTCGTACGGCTCGGGCTTTGCTGCTACGCTCTACTCCGTCAAAGTCACACAAGACGCTACGCCTGgATCTTCTCTGGATAAGTTGGTCTCCAGCCTGTGTGATTTGCAGGCCAGGCTGGATTCTAGAAAGAAGGTTTCGCCGGATGTTTTTGCCCAGAACATGAAGCTAAGAGAAGAAACCCACCATTTAGCAAACTACATCCCTCAGGGCCCGGTAGATGAACTCTTCCCAGGAACGTGGTACCTCACTCGTGTGGACGAGAAGCATCGCAGGCAGTACGCCAGACGCTCGATGAACGATGACAGACCGCTGGAGGCCGGACCGGTCAGTTCCAGCATTGCACCCGAGcATATTCCCAGTCCGCTCAAGAAGATGCCCCGCATCCCGACTGCCACAGCTGGCTCTGAGGTGCTCATTAGTAACGGGGATCATTAAGTTTACCTCTGTGAGGTGCACACCATGGCAGGTCACATTGAGGACGCTGATCTGTAAAACGACACGGTAAAAAGGGCCCCGGGAATCCTGCAGCCAGATCACTTATCAATGAGTGATACGAACCTCAAAGCTTTTTAATGTTCCAGGACAGACTCCGCTCGACCGTCACTGTGCTGAAGATGGCAGAGGGTAGTTTGGAAATGAAGTGTTTCTCTGTGGTGAGCTCCCACAAACTGCTGCTCACAGTCGTCTATGCAGAAATCCTGAATTGTTCATTCTTTTAAGTCCAAATATCTACCTGTTGGCATTTCACAGGCTCcatgctgtctttttttttttttttttttaagcattaaactAACCGTGTCATTCAAAACAGACATTTAGGAGAAAACATGGATGTCTTGAAGCAGAGCATcccttgttgtttttaattgatcaaCGCTGTTTCTATGTCTTcgtctttttttgcttttataaaactcCTTTCTAGTCGGTCTTACCACCATGGCCATGTCAGGGAAATGTGCCTGGATCGCATATTAATGAGCCATAAGctttacaaattttaattacGTTCACCTGTCTAGTAATAATTGTTTAGTCGCTGCTAAACGGCTTCTGTTAGCGTTCATGTCCTTGGAAATGagtatcatttatttgattttcattCTAGCCAAAGTAGATGGTGTTCGTTTCTGAACTCCAATGAGGaaatacatttgtgtaaaaGATAAAAACGTGATGACTTAGTGGCAACGTGTTATAGCtattaaacaatataatcaGTTAAACTGGTaacatatttttggaaaaaagccAGTTTTGAGGATGAAAGTGAGTGAGAAAAGAGCACTTGATTGGCTGATTGTCAGCTGtccacctaaaaataaaaactgtcatttacttaccctcattcACTCCAAACCGATACGcactaaaatatacaaaaaaaaatatatatatataattttccaAGAGACTTTAGTACCTTAAGGGTCCTATTGGTATGTATATAGTACATATAAGTACAAATGAGTAGAtagaaatacatattaataccCCAAAAGGCTctctagcttttttttattgtttataggACTAACCATCTTCTGTGCAGCAATAAAAGATAgaattttgagaaatgttggCAACTAAAGAGACCTAGTTCCCATTGACTTTCAatgtatggacaaaaaataaataaaataatcaatggGAACTGAAACTTTTTGGTTATTCTTCACAATATCTTTCATGATACACAGAAAAATCGGTTATGGAGGTTTGCAAGAAcacgagagtgagtaaatgatgacagatgtttaatttttgggtgaactgtgcctttaacTCGCTCTTTATTTGTAGATCACAACTAACTCTTAATATTCCTTGAACTGTTAAGAAATTGCAATCCGAAGAATCTTATGTGATCAAATGTTTGACCTGTGATTGTTCCAAACTACAGAGCACTTCTCAGTAATGATACAGCTTATTTAGAGATTTATCGatttcaaatttataaaagAAGCAATATCAATACTACGGTATTGTAAATGTTAGCACCTTGAAGCTAAATGTTTAGTGGCGGATATATACTAagccaaaagcaaaaaaaaaaagattttatcaGAAAGAATTTATGCTTGATTGCAAAAACACTGATAGCAAGATGGTATTTCCTTTCGGAACATTCTTCAATTTGTGGGTCCATGTTAACACTTCTGCTAATTCATCAACTTTGAGAAGCCTTATTCTGAGCATGTAcagaacacacaaatatattctGAAACTGTATAGagatatatttctttttcattctgcTGCCAGGACATTTTGACTGTAGAGTTATAACTTGAAACGGCCAATGTTTACAAGATGTCTCCCTCAGATCGGTTCATACCAATAATTGGTAAGTAATGTACAGCGCTAACTTATATTTTGTAGGTGGACAAAAACCGCTATGCGATCAGGTGTGATGTGCAGAAAACAAGCTGTAAAGACGATGTGTATCTGATAATATATGAACTGAGGAttaaatgttgatttgctgAA

Function

symbol description
hmgcs1 Predicted to enable hydroxymethylglutaryl-CoA synthase activity. Acts upstream of or within animal organ development and oligodendrocyte development. Is expressed in several structures, including digestive system; immature eye; nervous system; pectoral fin musculature; and yolk syncytial layer. Orthologous to several human genes including HMGCS1 (3-hydroxy-3-methylglutaryl-CoA synthase 1).

NR:

description
PREDICTED: hydroxymethylglutaryl-CoA synthase, cytoplasmic-like isoform X1

GO:

id name namespace
GO:0008299 isoprenoid biosynthetic process biological_process
GO:0004421 hydroxymethylglutaryl-CoA synthase activity molecular_function

KEGG:

id description
K01641 E2.3.3.10; hydroxymethylglutaryl-CoA synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250610.1 True 3772 mRNA 0.45 10 4002642 4009370
XM_043250611.1 False 3768 mRNA 0.44 10 4001799 4009370

Neighbor

gene id symbol gene type direction distance location
map3k1 map3k1,LOC107558252,LOC107670047,LOC107715839 coding upstream 1861 3960041 ~ 3999938 (+)
syk syk,LOC107715877,LOC107736968 coding upstream 65962 3912265 ~ 3935837 (+)
st8sia4 st8sia4,LOC107702581,LOC107670050,LOC107558264,LOC107560405 coding upstream 110552 3883259 ~ 3891247 (+)
il6st LOC107715880 coding upstream 167429 3821337 ~ 3834370 (+)
ankrd55 ankrd55,LOC107702571,LOC107670032,LOC107737049 coding upstream 183314 3808014 ~ 3818485 (+)
tpm2 tpm2,LOC107670037,LOC107737084,LOC108276716,LOC108427282,LOC103044350,LOC108242564,LOC107572193,LOC107715874,LOC100710292,LOC106571564 coding downstream 72213 4081583 ~ 4096903 (+)
zgc:114200 zgc:114200,aph1a,LOC107572194,LOC107737132,LOC107670051,LOC107572192,LOC108427283 coding downstream 88676 4098046 ~ 4104787 (+)
reep5 reep5,LOC107740782,LOC107715872,LOC107098485 coding downstream 117523 4126893 ~ 4131432 (+)
ddx4 LOC107665473,LOC107715859,LOC107740783,LOC107670045 coding downstream 200269 4209639 ~ 4229765 (+)
slc38a9 slc38a9,LOC107564110,LOC107670042,LOC107740785,LOC107715861,LOC107566906,LOC107665474 coding downstream 222300 4231670 ~ 4241404 (+)
G74626 NA non-coding upstream 108779 3891891 ~ 3893020 (+)
G74596 LOC107715844 non-coding upstream 142847 3854316 ~ 3858952 (+)
G74589 NA non-coding upstream 157287 3788757 ~ 3844512 (+)
G74585 NA non-coding upstream 233147 3768201 ~ 3768652 (+)
LOC122353153 NA non-coding upstream 413905 3587363 ~ 3587894 (+)
G74667 NA non-coding downstream 111494 4120864 ~ 4122658 (+)
G74680 NA non-coding downstream 142088 4151458 ~ 4153279 (+)
G74681 zgc:194281,cunh5orf30,LOC107665462,LOC107740794,LOC107670048,LOC107564120,LOC107715868 non-coding downstream 145677 4155047 ~ 4160317 (+)
G74659 NA non-coding downstream 155588 4164958 ~ 4176118 (+)
G74686 NA non-coding downstream 188162 4197532 ~ 4201390 (+)
cdc42se2 cdc42se2 other upstream 307203 3669003 ~ 3694596 (+)
zgc:113274 LOC107715885,LOC107702590,LOC107720383,LOC107560406 other upstream 333793 3663912 ~ 3668006 (+)
enoph1 enoph1,LOC107702573,LOC107715850,LOC107679042,LOC107731803 other upstream 384283 3588244 ~ 3617516 (+)
LOC122352388 tln1,LOC107715875,LOC107670039,LOC107568645,LOC107702558,LOC107737170 other downstream 3664 4013034 ~ 4120447 (+)
LOC122352783 tln1,LOC107715875,LOC107670039,LOC107568645,LOC107702558 other downstream 471897 4481267 ~ 4529002 (+)
LOC122352404 LOC107670527,LOC107567246,LOC107587997,LOC107757377,LOC107711240,LOC107672489 other downstream 1107496 5116866 ~ 5123373 (+)
LOC122352567 ywhah,LOC107562560,LOC107744159,LOC107713377,LOC107555530,LOC107688000 other downstream 1228909 5238279 ~ 5250137 (+)
G74965 NA other downstream 1247468 5256838 ~ 5258823 (+)

Expression


Co-expression Network