LOC122352888 (pcyox1,LOC107562568,LOC107686458,LOC107713365,LOC107569400,LOC107688072,LOC106564891)


Basic Information

Item Value
gene id LOC122352888
gene name pcyox1,LOC107562568,LOC107686458,LOC107713365,LOC107569400,LOC107688072,LOC106564891
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 8574262 ~ 8579753 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250631.1
CCATATCCTCCACTGCCTTCTGCACGCGAGCCTGCTGTCCTTCTGCCATTCCTGATCTCACATCAACTGCTTTTATTTCCAGTAAACGTTAGTAATAAAGATAACTAGTTACTGCTTCAACCAGCGGACTCTATAAAGCCACGACTCAAACCCAACAGATTTGACTAACAAAACCTGCAAATAATTACTGAAACGTTCAAATGTATCAACCTGAAGTATCCTGAAATTCAATAATTCTTCAGTAAGGTCACCTCCTACTACACCTAAAAAGCATGCTACCGGTAATTACGCCACTTCCGCCGCGTAACGAGTACTATTTCCGTTTCCGTACTTCCGTACTCTGCTACTGCTGGATTTCACGTTTTCACCTGTTTTATGCAGTTTGTTTcctcacactttatttaaacttttcacCCTGATATGTAAACAGatgttgatattataaaaaaacactgaatccaTAAAATGCTTCTGAGACGCTTGTCGGTGAAGGCGCTTCTCTTCTTTGGTCTTTGTCAAGTTGGACGCAGGGGTTTTGCCTCTGCACCTGAAGTGAGAGAGGCACCAAAGAAAATTGcAATAATTGGCGGTGGTATTGGAGGCACAGCAGCAGCATTTTTCTTGAGACAAGAGTTTGGACCGGCAGTGAAGATTGAAGTGTTCGAGGCTGGGACAGTCGGAGGGCGTCTGGCCACTGAAAACATTGGAGGATATGAATATGAGACAGGGGGATCCATTATTCACCCCCTCAACTTGCACATGAAGTACTTTCTGGACAGACTCGGTCTGTCTCAACGTGGGGATGTATCTTCTAAACTGGCAATATTTGATGGGAAGGAGCTGACCTTTGAAGAGAGCGACTGGTTCGTAGTGAACTTCGTACGCATGCTGTGGAGATATGGATTCAACTTTATTCGAATGCATATGTGGGTCGAGGGCATACTGGACAAGTTTATGAGGATATATCAGTACCAGCAGTTTGGGTACTCATTCTCCAGCGTGGAAAAGTTGCTTCATGCTATGGGTGGAGATGGTTTCCTTACACTGGTCAATCAGACGCTGGAGGAGGCCATGCTGGCTGAGGGCTTCTCTCAGATTTTTCTCAATGACATTGTAACGCCCGTCACAAGAGTCAACTACGGCCAAAGTGTCCGAATCAATGGATTTGTGGGGGCTGTTGCACTAGCAGGAGCTGACTCAGGATTGTGGGCAGTGGATGGAGGGAATAAGATGGTCTGTTCTGGGCTTCTGTACCACAGCAAAGCTGAACTTGTTCCAGCTCGTGTTACAGCCATCTCCATGAAGATGAGACCATCCAAAACTGGCATCGCTGCAAATTTCTATGAAGTGAACTACGTTGGTGAGTCTGGTGCCGCCCATTCCATGTACGACATAGTTGTAGTTGCCACACCTCTCCACCAGGGCATGTCTGACATCAACTTCTCAGGCTTTTCTCCACCCATTCCAACCCACTTCCCTGGCCGCTACCACCAAACGGTGGCCACACTGGTCCACGGTCTGCTTAATGTGTCCTATCTGGGGACCACAGAGAAGCCAGACAAGTTCTTTGTTTCTGACGTGCTCACATTGGACAACAAAGAATCTGAGATCCACAGCCTGAGCTCTCTGGACCCAGTGAAGATTCCCAGAGGTTACTCACGGAGCCCTGCCAGCCAACGCAAAGTATGGAAGATCTTCTCCTCCCAGTCACTTTCCGAGAAGAATCTGCAGCAAATCTTCCTTTCCTGGGATTCTGTGTCAGAGAAACGCTGGCTGGCATACCCTTCCTACAGCCCGCCGCACCGCAGGACGCCTCCCTTTATCCTCCATGATCGCCTCTACTACCTCAACGCTGTGGAATGGGCAGCCAGTGCCATGGAGATGAGTGCCATTTCCGCCCGTAATCTGGCTCTGCTCGCCCACCATCGCTGGTATGAGCAGACGGCCAGAATCGATCAAGAGGACCTTCACACCAGACTCAAAGGTGAACTTTGACAGAGATGAGAGATTGGATTGTGAAAAGGAAGAcctgtactgtaaaataattttttttaggttattaCACAGGTAGGTTATTACAAATAAGCATACCCACGATTATCATTACTGAAATAAGAAATGGGATTCACTAGTGGGATTTGTCTTTGAAATAATCAATGACTTAAAAGTTTACTAATTCTATTACTTTGTCCCATACAAAACGTGGCCTGGTATTTAAAGtagaatcatttttattacaaattatctACAAAATATTTCCTTAGGAAAC
>XM_043250632.1
CTATTTCCGTTTCCGTACTTCCGTACTCTGCTACTGCTGGATTTCACGTTTTCACCTGTTTTATGCAGTTTGTTTcctcacactttatttaaacttttcacCCTGATATGTAAACAGaattatactCAAACAAATACGTACAGTGgcatataaataacaacaagaccagcgagagagaaaaaaaataagtcacAGAAAAgatgttgatattataaaaaaacactgaatccaTAAAATGCTTCTGAGACGCTTGTCGGTGAAGGCGCTTCTCTTCTTTGGTCTTTGTCAAGTTGGACGCAGGGGTTTTGCCTCTGCACCTGAAGTGAGAGAGGCACCAAAGAAAATTGcAATAATTGGCGGTGGTATTGGAGGCACAGCAGCAGCATTTTTCTTGAGACAAGAGTTTGGACCGGCAGTGAAGATTGAAGTGTTCGAGGCTGGGACAGTCGGAGGGCGTCTGGCCACTGAAAACATTGGAGGATATGAATATGAGACAGGGGGATCCATTATTCACCCCCTCAACTTGCACATGAAGTACTTTCTGGACAGACTCGGTCTGTCTCAACGTGGGGATGTATCTTCTAAACTGGCAATATTTGATGGGAAGGAGCTGACCTTTGAAGAGAGCGACTGGTTCGTAGTGAACTTCGTACGCATGCTGTGGAGATATGGATTCAACTTTATTCGAATGCATATGTGGGTCGAGGGCATACTGGACAAGTTTATGAGGATATATCAGTACCAGCAGTTTGGGTACTCATTCTCCAGCGTGGAAAAGTTGCTTCATGCTATGGGTGGAGATGGTTTCCTTACACTGGTCAATCAGACGCTGGAGGAGGCCATGCTGGCTGAGGGCTTCTCTCAGATTTTTCTCAATGACATTGTAACGCCCGTCACAAGAGTCAACTACGGCCAAAGTGTCCGAATCAATGGATTTGTGGGGGCTGTTGCACTAGCAGGAGCTGACTCAGGATTGTGGGCAGTGGATGGAGGGAATAAGATGGTCTGTTCTGGGCTTCTGTACCACAGCAAAGCTGAACTTGTTCCAGCTCGTGTTACAGCCATCTCCATGAAGATGAGACCATCCAAAACTGGCATCGCTGCAAATTTCTATGAAGTGAACTACGTTGGTGAGTCTGGTGCCGCCCATTCCATGTACGACATAGTTGTAGTTGCCACACCTCTCCACCAGGGCATGTCTGACATCAACTTCTCAGGCTTTTCTCCACCCATTCCAACCCACTTCCCTGGCCGCTACCACCAAACGGTGGCCACACTGGTCCACGGTCTGCTTAATGTGTCCTATCTGGGGACCACAGAGAAGCCAGACAAGTTCTTTGTTTCTGACGTGCTCACATTGGACAACAAAGAATCTGAGATCCACAGCCTGAGCTCTCTGGACCCAGTGAAGATTCCCAGAGGTTACTCACGGAGCCCTGCCAGCCAACGCAAAGTATGGAAGATCTTCTCCTCCCAGTCACTTTCCGAGAAGAATCTGCAGCAAATCTTCCTTTCCTGGGATTCTGTGTCAGAGAAACGCTGGCTGGCATACCCTTCCTACAGCCCGCCGCACCGCAGGACGCCTCCCTTTATCCTCCATGATCGCCTCTACTACCTCAACGCTGTGGAATGGGCAGCCAGTGCCATGGAGATGAGTGCCATTTCCGCCCGTAATCTGGCTCTGCTCGCCCACCATCGCTGGTATGAGCAGACGGCCAGAATCGATCAAGAGGACCTTCACACCAGACTCAAAGGTGAACTTTGACAGAGATGAGAGATTGGATTGTGAAAAGGAAGAcctgtactgtaaaataattttttttaggttattaCACAGGTAGGTTATTACAAATAAGCATACCCACGATTATCATTACTGAAATAAGAAATGGGATTCACTAGTGGGATTTGTCTTTGAAATAATCAATGACTTAAAAGTTTACTAATTCTATTACTTTGTCCCATACAAAACGTGGCCTGGTATTTAAAGtagaatcatttttattacaaattatctACAAAATATTTCCTTAGGAAAC
>XM_043250633.1
ATCATTCATTTACTTTGTCAAAGTTTAGCACTTTTTAGTAcaaaatttaagtaattttatgGTTATaactgtgtttaatttttataatatgcagatatgaatccaacaacaaaaaacttgtGAAAACATCTTTCAGGtagtcaaatataaaaaatagtggAGCTCTGCAGCCATCTACTGGCAAAacAATAATTGGCGGTGGTATTGGAGGCACAGCAGCAGCATTTTTCTTGAGACAAGAGTTTGGACCGGCAGTGAAGATTGAAGTGTTCGAGGCTGGGACAGTCGGAGGGCGTCTGGCCACTGAAAACATTGGAGGATATGAATATGAGACAGGGGGATCCATTATTCACCCCCTCAACTTGCACATGAAGTACTTTCTGGACAGACTCGGTCTGTCTCAACGTGGGGATGTATCTTCTAAACTGGCAATATTTGATGGGAAGGAGCTGACCTTTGAAGAGAGCGACTGGTTCGTAGTGAACTTCGTACGCATGCTGTGGAGATATGGATTCAACTTTATTCGAATGCATATGTGGGTCGAGGGCATACTGGACAAGTTTATGAGGATATATCAGTACCAGCAGTTTGGGTACTCATTCTCCAGCGTGGAAAAGTTGCTTCATGCTATGGGTGGAGATGGTTTCCTTACACTGGTCAATCAGACGCTGGAGGAGGCCATGCTGGCTGAGGGCTTCTCTCAGATTTTTCTCAATGACATTGTAACGCCCGTCACAAGAGTCAACTACGGCCAAAGTGTCCGAATCAATGGATTTGTGGGGGCTGTTGCACTAGCAGGAGCTGACTCAGGATTGTGGGCAGTGGATGGAGGGAATAAGATGGTCTGTTCTGGGCTTCTGTACCACAGCAAAGCTGAACTTGTTCCAGCTCGTGTTACAGCCATCTCCATGAAGATGAGACCATCCAAAACTGGCATCGCTGCAAATTTCTATGAAGTGAACTACGTTGGTGAGTCTGGTGCCGCCCATTCCATGTACGACATAGTTGTAGTTGCCACACCTCTCCACCAGGGCATGTCTGACATCAACTTCTCAGGCTTTTCTCCACCCATTCCAACCCACTTCCCTGGCCGCTACCACCAAACGGTGGCCACACTGGTCCACGGTCTGCTTAATGTGTCCTATCTGGGGACCACAGAGAAGCCAGACAAGTTCTTTGTTTCTGACGTGCTCACATTGGACAACAAAGAATCTGAGATCCACAGCCTGAGCTCTCTGGACCCAGTGAAGATTCCCAGAGGTTACTCACGGAGCCCTGCCAGCCAACGCAAAGTATGGAAGATCTTCTCCTCCCAGTCACTTTCCGAGAAGAATCTGCAGCAAATCTTCCTTTCCTGGGATTCTGTGTCAGAGAAACGCTGGCTGGCATACCCTTCCTACAGCCCGCCGCACCGCAGGACGCCTCCCTTTATCCTCCATGATCGCCTCTACTACCTCAACGCTGTGGAATGGGCAGCCAGTGCCATGGAGATGAGTGCCATTTCCGCCCGTAATCTGGCTCTGCTCGCCCACCATCGCTGGTATGAGCAGACGGCCAGAATCGATCAAGAGGACCTTCACACCAGACTCAAAGGTGAACTTTGACAGAGATGAGAGATTGGATTGTGAAAAGGAAGAcctgtactgtaaaataattttttttaggttattaCACAGGTAGGTTATTACAAATAAGCATACCCACGATTATCATTACTGAAATAAGAAATGGGATTCACTAGTGGGATTTGTCTTTGAAATAATCAATGACTTAAAAGTTTACTAATTCTATTACTTTGTCCCATACAAAACGTGGCCTGGTATTTAAAGtagaatcatttttattacaaattatctACAAAATATTTCCTTAGGAAAC

Function

symbol description
pcyox1 Predicted to enable prenylcysteine oxidase activity. Predicted to be involved in prenylated protein catabolic process. Predicted to act upstream of or within prenylcysteine catabolic process. Is expressed in Kupffer's vesicle; forerunner cell group; and yolk syncytial layer. Orthologous to human PCYOX1 (prenylcysteine oxidase 1).

NR:

description
PREDICTED: prenylcysteine oxidase-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0030328 prenylcysteine catabolic process biological_process
GO:0001735 prenylcysteine oxidase activity molecular_function

KEGG:

id description
K05906 PCYOX1, FCLY; prenylcysteine oxidase / farnesylcysteine lyase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250631.1 True 2269 mRNA 0.46 7 8574262 8579753
XM_043250632.1 False 2039 mRNA 0.46 8 8574262 8579440
XM_043250633.1 False 1878 mRNA 0.45 6 8574262 8577664

Neighbor

gene id symbol gene type direction distance location
LOC122352897 LOC107569402,LOC107688131,LOC107686449,LOC107744108,LOC107713359 coding downstream 34293 8531873 ~ 8539969 (-)
LOC122352883 inpp5j,LOC107686450,LOC107562581,LOC107688649,LOC107744151,LOC107569389 coding downstream 56271 8498472 ~ 8517991 (-)
mat2aa mat2aa,LOC107688110,LOC107686452,LOC107569395,LOC107744110,LOC107713361,LOC106580346 coding downstream 78029 8489265 ~ 8496233 (-)
mpx LOC107686454,LOC107744111,LOC107562576,LOC107688477 coding downstream 106155 8462246 ~ 8468107 (-)
loxa lox,loxa,LOC107562574,LOC107686455,LOC107569406,LOC107744154 coding downstream 120917 8437322 ~ 8453345 (-)
inpp5kb LOC107556871,LOC107720665,LOC107718714,LOC107592158,LOC107701109 coding upstream 656157 9235910 ~ 9244662 (-)
pitpnab pitpnab,LOC107556875,LOC107684996,LOC107720580,LOC107701111,LOC107592159,LOC108410689,LOC103045464,LOC108237022 coding upstream 666197 9245950 ~ 9265990 (-)
slc43a2b slc43a2b,LOC107684998,LOC107556870,LOC107720664,LOC107701113 coding upstream 687061 9266814 ~ 9277561 (-)
hephl1b LOC107720546,LOC107685013,LOC107556850 coding upstream 697949 9277702 ~ 9288615 (-)
stoml3b stoml3b,LOC107556874,LOC107685018,LOC107720596,LOC107701117,LOC103043838,LOC108444492,LOC108277281 coding upstream 815727 9395480 ~ 9399654 (-)
G75871 NA non-coding downstream 313995 8230688 ~ 8260267 (-)
G75868 NA non-coding downstream 352397 8214662 ~ 8221865 (-)
G75767 NA non-coding downstream 408554 8165448 ~ 8165708 (-)
G75749 NA non-coding downstream 474456 8097306 ~ 8099806 (-)
G75667 NA non-coding downstream 810409 7761525 ~ 7763853 (-)
LOC122352914 NA non-coding upstream 307251 8887004 ~ 8887358 (-)
G75970 NA non-coding upstream 550133 9129886 ~ 9130320 (-)
LOC122352752 NA non-coding upstream 728215 9307968 ~ 9310228 (-)
G76042 NA non-coding upstream 742846 9322599 ~ 9325478 (-)
G76112 NA non-coding upstream 990678 9570431 ~ 9572283 (-)
G75913 LOC107688158,LOC107713356,LOC105014858,LOC103473696,LOC107686448 other downstream 18174 8543097 ~ 8556088 (-)
smtna smtna,LOC107686451,LOC107569392,LOC107688657,LOC107713360,LOC107744109,LOC107579337 other downstream 46815 8519666 ~ 8527447 (-)
unc13bb unc13bb,unc13b,LOC107686461,LOC107713368,LOC107688005 other downstream 177863 8318889 ~ 8396399 (-)
G75863 NA other downstream 288344 8173349 ~ 8285918 (-)
rnasekb rnasek,LOC107554319,LOC107720683,LOC107676000,LOC107586166 other downstream 688780 7883342 ~ 7885482 (-)
G76068 NA other upstream 848209 9427962 ~ 9429800 (-)
cd209 NA other upstream 909577 9489330 ~ 9510430 (-)
LOC122353179 LOC107693906,LOC107720543,LOC107555189,LOC107701125,LOC107718772 other upstream 992619 9572372 ~ 9625405 (-)
fgf13b fgf13,fgf13b,LOC107555168,LOC107718748,LOC107720625,LOC107701151,LOC107548853,LOC107693932,LOC108444526 other upstream 1687601 10267354 ~ 10283665 (-)
G76438 NA other upstream 1800343 10380096 ~ 10383309 (-)

Expression


Co-expression Network