sftpba (LOC107744174,LOC107688118,LOC107562578,LOC107713296,LOC107578508)


Basic Information

Item Value
gene id sftpba
gene name LOC107744174,LOC107688118,LOC107562578,LOC107713296,LOC107578508
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 8475593 ~ 8481988 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250651.1
AGGTCTACAGCTTTGTCATTTGCAAAGTGAGAGCTCTATGTTATCGTGCCTCACCGGTGCTTTTGAGGTGTCATATATAAAGGGTAGTTCCTGTTTAAGCTGAACTTTCCAGTTGCTTCATGCAGggccaaaataaaacattttgcattggTTCTGCAACCTTTGGTGATTGAAGACATGACTGCCTTTAGACtggagtttttctttttcactgcTCTTCTGGGCTCAgtcaACACACGCTCTGTTGATACAACTGGCGTGATGAATGTCCTGATGGGTGTGGATGTCACTGCGACAGGTGACATGTGCCAGGACTGCAGTAAGATTTTTGAGCTTCTAAAGGACCTCCTTTCCAATGAAGACTTCCAGACCAAATTAACTGCCGCTCTTGACCAAATGTGTGATAAGTTGCCTCTCCAAATCACTCAAATCTGCCACACCGAGGTGGAAAAGATGCTTCCACTGGCTATCACCTTCATTACCAGCATAATGCAACCTGGTGACATCTGTACAATTCTAGGAATGTGTGGAGGACGTGACAGTGCCAAGATTAGAGCTCTGTTGCTtaatcacatttcaaaaacgGCACCAGTGCCAACTATGAAGATGGAGACATCCATTCAGTGCTCTGTTTGCACATATGTCGTGAGCTCACTTGGGTATCTGTTTCCCAGAGAGAGGGCTCAGAACATCGTAACTGTGCTGCTGGAGAGTTTGTGCAGAGAATTTCCCCTTCCGGTTCAACCACAGTGCAATAAAATGGTTGAAAAATACGTTCAACTGTTGGTTGAAATGCTACTGAACAATACTTCTCCTAACTTCATATGCACTCTgcttcatttttgtgaaatatggGAGCATCCCATCAATGCTTCTGTGCCTTTTTCTGATTGTGAATCTTGTCTCACATTGGGAGTTCTGGCTCATGTTTATCTGGGCCCCAATGTCACTGAGCTCCAGGCTGCTTCATTCTTGGACACCGTCTGCCAGCTGCACCCCAGTGCCATGCCAAAGTGTGAGACCTATGTGCAGCGTCATGGGAACCAGCTCCGTGTGTTTCTGAGCCAACAGCAGGAGTTACTGGACATTTGTAAGAGGGcacatttgtgtgtttctggTGAGAAGGAGATTGCTGCTGACCCCTGTAGCCTTGGACCAATCTACAGCTGTAGAGACCTCCAGACTGCTGTCAACTGTGGGGCAATTTCCTTCTGTCAGAAGAACGTGTGGGAATAATCTTTTTCTGCTGTCCAAACTACATGGTAAATGTCAACTCATTGTTTGCTAAATGTCAACCAATTGCTAATAAAATTGCTAACAAACTTA

Function

NR:

description
prosaposin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250651.1 True 1326 mRNA 0.45 11 8475593 8481988

Neighbor

gene id symbol gene type direction distance location
ggcx ggcx,LOC107744113,LOC107686456,LOC107569403,LOC107562573,LOC107713363,LOC107688460 coding upstream 48663 8420336 ~ 8426930 (+)
fam136a fam136a,LOC107744116,LOC107713366,LOC107562571,LOC107569401,LOC107686460,LOC107688083 coding upstream 63990 8409867 ~ 8411603 (+)
stoml2 stoml2,LOC107686459,LOC107569390,LOC107688641 coding upstream 73997 8398186 ~ 8401596 (+)
fam166b LOC107744158,LOC107562540,LOC107686494,LOC107713372,LOC107555534,LOC107688046 coding upstream 180758 8292462 ~ 8294835 (+)
rnf208 si:dkey-106l3.6,LOC107744121,LOC107686464,LOC107688056,LOC107713373,LOC107562563,LOC107555535 coding upstream 191283 8272091 ~ 8284310 (+)
LOC122352417 NA coding downstream 588852 9070840 ~ 9085659 (+)
paxbp1 paxbp1,zgc:158234,LOC107684999,LOC107701114,LOC107718769,LOC107592156 coding downstream 808863 9290851 ~ 9302634 (+)
slc7a1a slc7a1,LOC107592154,LOC107718716,LOC107685000,LOC107720662,LOC107556867,LOC107701112 coding downstream 821648 9303636 ~ 9323880 (+)
mtus2a mtus2a,LOC107718718,LOC107685001,LOC107701115,LOC107555194 coding downstream 843836 9325824 ~ 9389728 (+)
vps36 vps36,LOC107720661,LOC107701118,LOC107718721,LOC107685004 coding downstream 925934 9407922 ~ 9416339 (+)
G75813 NA non-coding upstream 8316 8464744 ~ 8467277 (+)
G75814 LOC107569391,LOC107713297,LOC107744111,LOC107686454,LOC107562576 non-coding upstream 13186 8397832 ~ 8462407 (+)
G75799 NA non-coding upstream 161471 8313561 ~ 8314122 (+)
G75774 NA non-coding upstream 189728 8285155 ~ 8285865 (+)
G75766 NA non-coding upstream 309889 8165448 ~ 8165704 (+)
LOC122352915 NA non-coding downstream 221526 8703514 ~ 8704860 (+)
G75934 LOC107556871,LOC107701109,LOC107720665 non-coding downstream 226766 8708754 ~ 8712198 (+)
G75974 NA non-coding downstream 764010 9245998 ~ 9253481 (+)
G75984 NA non-coding downstream 784827 9266815 ~ 9273289 (+)
LOC122353086 NA non-coding downstream 795445 9277433 ~ 9283648 (+)
G75750 NA other upstream 372669 8101476 ~ 8102924 (+)
arrb2a arrb2a,arrb2,LOC107742343,LOC107586162,LOC107676026 other upstream 595493 7872539 ~ 7880100 (+)
trnat-agu_2 NA other upstream 613560 7861960 ~ 7862033 (+)
trnas-gcu_13 NA other upstream 613919 7861593 ~ 7861674 (+)
LOC122353465 NA other upstream 614214 7861246 ~ 7861379 (+)
LOC122352912 fam136a,LOC107569401,LOC107562571,LOC107713366,LOC107744116,LOC107686460,LOC107688083 other downstream 98021 8580009 ~ 8581128 (+)
G75935 LOC107556871,LOC107718714,LOC107720665,LOC107592158 other downstream 231215 8713203 ~ 8716277 (+)
G75937 NA other downstream 251791 8733779 ~ 8734996 (+)
gbe1a gbe1,LOC107685012,LOC107708609,LOC106581537,LOC108410718,LOC105900410 other downstream 594878 9076866 ~ 9207335 (+)
LOC122353220 slc46a3,LOC107701100,LOC107555149,LOC107718789 other downstream 867184 9349172 ~ 9396047 (+)

Expression


Co-expression Network