XLOC_006601 (phactr2)


Basic Information

Item Value
gene id XLOC_006601
gene name phactr2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 23919480 ~ 23956361 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012750
GGAGATTTGGAGCTCGACTGCGTTTATCGCGACTTCACAAAGTATGGAAAAGCTCTTTTGAGAAGCGGATCTCAGAGCCGGAGAAGTGAAATGCGTCTGCTGTTATGTCGATCGAGTGGGCTTTGTTGGACAAGTTCTTGGGGCGTCGTATGATTTTTGTTTAGAGGCCCATTGGAGATCGACATGGGCCAGACATCTGTCTCCAGCTTGTCACAGAGAGCGAGCGTGGAGGGGCTGGAAAAATCTTCTCTTGCCAACTGTGATGTGGTGGGAAGCTCTCAGTCTCCTCAGCTGAAAGGAAAGGGTAAGCTCTCTTCACTGGGCAAGATCTTTAAACCTTGGAAATGGAGAAAGAAGAGGACCAGTGATAAGTTCCAGGACCTCTCCAAAGTTCTGGAGAGGAAAATATCCACCAGGCAAACAAGAGAAGAGCTTATAAAGAAGGGTGTGCTTATTCCAGACCAAGATGACCCTTTGAACACAGAGACCTTGAATGGCCATGCAGTGCCCAGTGGAGGTACTGAAAAGGTCAAAGTGGACATTGAAACACCAGAACCAGTCCCAGAAGAGAAATCAGACTTGGCGGCAGTGGCAGAGGAGCCAGAAGCTAAAACTTCGAATGCTAAAAAAACTACAGGCACATCCAAAGGATCCTCTCAGGCTTCAGGTCAATCATCTTCACAGACCTCCTCAAAAACCTCCAAAAACAGCAACTCAGAACATACAGGACAAGCCAAGACTGGTAAGAAGACTGAACCCTCCAGGTCGCAGCGGCCCCTTTCTAAAACACAAGAGACTGTGGAAAGCTCCTCTAAAAAGgaccaaaagaaaaaagaattaaCCACCAGTGTTAATGAAAAGGCAGAGGAGAAATCTCAAAACGGGAAGGGTGACAGTCATCTTTCGAAGTGTGCAGAGACCGACAAAAGACAGTCTCATGTTAACCAGGCCACAGAGGAAACCTCCTTCATTGGGTCCTCAAATGAACTTTCGTCAGATGCGTCAGCTGAACCTGTGAACGTAGAGACTGAGACACAGAAAGAGAAAGCGGATCAGACACAGAGggATGCTGGGAAGGAAGAGGGAGAGAGACAGCAAACTGTCAATGTGGAAAGTGCAGAGGTCACCATCATTCCTGACTCCATTCGGGAAAACCAGGCAAATGACTCTGATTCAGATGGACCTATTCTCtataaagatgatgatgaagaggaggatgaagatgatgagtATACCTCTAGCTCCCTTGCCAGTAAAATTCGCCGCAGGGACACTCTTGCTATTAAACTTGGTAACAGGCCCAGCAAGAGGGAGCTTGAAGAGAAGAACATTCTCCCACGAACCTCGGAGATGGAGCGACAGGAGCTAAGACAGCAAATCGGCTGCAAACTAGTCAGACGGTTGAGTCAAAGACCCACCACAGAAGAGCTTGAACAGCGAAACATTCTAAAACAGAAAAATGAGGAAGAAGAACATGAGGCCAAGCAGGAGATTAAAAGACGACTGTCCCGAAAGctcAGTGTTCGGCCCACAGTCGCAGAATTGGTGGCACGCAGAATTTTGCGCTTCAATGAATATGTGGAGGTCACAGAAGCAAAAGACTATGATCGACGTGCTGACAAGCCCTGGACTAGGTTAACCCCTGCAGACAAAGCTGCTATACGTAAGGAACTTAATGAGTTTAAAAGCAAAGAAATGGAAGTCCATGAAGAAAGCAAACAATTTACAAG
>TCONS_00012751
GCACAGTACTTTCTAATGATGTCACTTTTGGCCAACGCGTTTATTACCAACATATATTTCCATGCTTTAAGCAGAGCTGAAGCAAGGAGGGGCTTGAAAACTTCCTCCTTATGACCTCTGACTGCTTacaatctgcaaaaaaaaaaaaaaaaaaaaaaaaaggaatgacaGGCATTTCAATCCGGAGATTTGGAGCTCGACTGCGTTTATCGCGACTTCACAAAGTATGGAAAAGCTCTTTTGAGAAGCGGATCTCAGAGCCGGAGAAGTGAAATGCGTCTGCTGTTATGTCGATCGAGTGGGCTTTGTTGGACAAGTTCTTGGGGCGTCGTATGATTTTTGTTTAGAGGCCCATTGGAGATCGACATGGGCCAGACATCTGTCTCCAGCTTGTCACAGAGAGCGAGCGTGGAGGGGCTGGAAAAATCTTCTCTTGCCAACTGTGATGTGGTGGGAAGCTCTCAGTCTCCTCAGCTGAAAGGAAAGGGTAAGCTCTCTTCACTGGGCAAGATCTTTAAACCTTGGAAATGGAGAAAGAAGAGGACCAGTGATAAGTTCCAGGACCTCTCCAAAGTTCTGGAGAGGAAAATATCCACCAGGCAAACAAGAGAAGAGCTTATAAAGAAGGGTGTGCTTATTCCAGACCAAGATGACCCTTTGAACACAGAGACCTTGAATGGCCATGCAGTGCCCAGTGGAGGTACTGAAAAGGTCAAAGTGGACATTGAAACACCAGAACCAGTCCCAGAAGAGAAATCAGACTTGGCGGCAGTGGCAGAGGAGCCAGAAGAAAGAAATGACAGCAAGCACATCCCACAAGCCAGTGAATCAGCCGCTCTAAAACCCCCTGCTAAAAAACCCCCGACTACACTCCCAAAACCCTCAGCTGAAGCCACGAGCACAGGCGTGAAGAAAGGGGGGCAAGCAGGAGCTAAAAAGGTAACCAAGGCTACCAATAAGCAGGTCTCTGCTCCTCCACCCAAACAAACCTCAAGAACTGCCACTCGTGGCAATGCTAAAACTTCGAATGCTAAAAAAACTACAGGCACATCCAAAGGATCCTCTCAGGCTTCAGGTCAATCATCTTCACAGACCTCCTCAAAAACCTCCAAAAACAGCAACTCAGAACATACAGGACAAGCCAAGACTGGTAAGAAGACTGAACCCTCCAGGTCGCAGCGGCCCCTTTCTAAAACACAAGAGACTGTGGAAAGCTCCTCTAAAAAGgaccaaaagaaaaaagaattaaCCACCAGTGTTAATGAAAAGGCAGAGGAGAAATCTCAAAACGGGAAGGGTGACAGTCATCTTTCGAAGTGTGCAGAGACCGACAAAAGACAGTCTCATGTTAACCAGGCCACAGAGGAAACCTCCTTCATTGGGTCCTCAAATGAACTTTCGTCAGATGCGTCAGCTGAACCTGTGAACGTAGAGACTGAGACACAGAAAGAGAAAGCGGATCAGACACAGAGggATGCTGGGAAGGAAGAGGGAGAGAGACAGCAAACTGTCAATGTGGAAAGTGCAGAGGTCACCATCATTCCTGACTCCATTCGGGAAAACCAGGCAAATGACTCTGATTCAGATGGACCTATTCTCtataaagatgatgatgaagaggaggatgaagatgatgagtATACCTCTAGCTCCCTTGCCAGTAAAATTCGCCGCAGGGACACTCTTGCTATTAAACTTGGTAACAGGCCCAGCAAGAGGGAGCTTGAAGAGAAGAACATTCTCCCACGAACCTCGGAGATGGAGCGACAGGAGCTAAGACAGCAAATCGGCTGCAAACTAGTCAGACGGTTGAGTCAAAGACCCACCACAGAAGAGCTTGAACAGCGAAACATTCTAAAACGTATGTGTCCTCTTTCTCAATCTGATTACCATTGTGTGCAGACAGTGTTTGGATGCCCAGGGCTTTACTGTTTGTTCTTGCTTATTACTGCCTCTGATGCTGGAGACACGTTCATTGGCAGCAACCAAAAATCAAGAAAACCAAGGCAACAGGAAAGATGCAATGAATTGTGGTACCTTTGTCTCTGTCACTTTTCTGTTGCCTTGGTTTTGATGTAA

Function

symbol description
phactr2 Predicted to enable actin binding activity. Predicted to be involved in actin cytoskeleton organization. Human ortholog(s) of this gene implicated in Parkinson's disease and multiple sclerosis. Orthologous to human PHACTR2 (phosphatase and actin regulator 2).

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process
GO:0004864 protein phosphatase inhibitor activity molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040724-11 Predicted to enable actin binding activity. Predicted to be involved in actin cytoskeleton organization. Human ortholog(s) of this gene implicated in Parkinson's disease and multiple sclerosis. Orthologous to human PHACTR2 (phosphatase and actin regulator 2).

Ensembl:

ensembl_id ENSDARG00000027172

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012750 False 1730 mRNA 0.47 11 23919480 23956178
TCONS_00012751 True 2079 mRNA 0.46 9 23925439 23956361
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Neighbor

gene id symbol gene type direction distance location
XLOC_006600 rgs17 coding downstream 162780 23728176 ~ 23756700 (-)
XLOC_006599 map3k21 coding downstream 252901 23634817 ~ 23666579 (-)
XLOC_006598 prim2 coding downstream 307111 23488282 ~ 23612369 (-)
XLOC_006597 NA coding downstream 507849 23408029 ~ 23411631 (-)
XLOC_006596 si:dkey-103j14.5 coding downstream 648904 23233956 ~ 23270576 (-)
XLOC_006602 AL772289.1 coding upstream 4931 23961292 ~ 23961406 (-)
XLOC_006603 cog2 coding upstream 39709 23996070 ~ 24018916 (-)
XLOC_006604 galnt2 coding upstream 112216 24068577 ~ 24218795 (-)
XLOC_006605 CR762497.2 coding upstream 170702 24127063 ~ 24127179 (-)
XLOC_006606 urb2 coding upstream 274966 24231327 ~ 24263682 (-)
XLOC_006471 BX537274.2 misc downstream 13654575 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 23093255 825904 ~ 826225 (-)
XLOC_006595 NA non-coding downstream 701662 23212759 ~ 23217818 (-)
XLOC_006585 BX530068.1 non-coding downstream 1071996 22843830 ~ 22847484 (-)
XLOC_006582 CR550304.1 non-coding downstream 1135047 22778060 ~ 22784433 (-)
XLOC_006578 BX649385.1 non-coding downstream 1724312 22191361 ~ 22195168 (-)
XLOC_006607 CR762497.1 non-coding upstream 327309 24283670 ~ 24286390 (-)
XLOC_006611 NA non-coding upstream 390628 24346989 ~ 24351543 (-)
XLOC_006616 NA non-coding upstream 616725 24573086 ~ 24574746 (-)

Expression

Expression of XLOC_006601(phactr2) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Expression of XLOC_006601(phactr2) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_12930929_12947409 PHACTR2 coding CI01000012 null 12930929 ~ 12947409 (+)