LOC122352925 (LOC107551999,LOC107677957)


Basic Information

Item Value
gene id LOC122352925
gene name LOC107551999,LOC107677957
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7519599 ~ 7523134 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250681.1
TAACTAAAGGTGTTTTCAAGTTTGGCTGCATATTTTCAGCGGTtcagtaaacatgtttttttttttttggtaatcaAGTCTTGTACACATAAATACGTCTGCTTTTAGTTTCTTTTGACAGAAAAAGGAGCAGTTGCACAAGAAGATAAGATCAAATCATTATGGCGACTGTAGTTGTGCAGCAGCCTCTCGGCAAATACGGGATGGAATCTTGGAATTCTGCAATATGTGACTGTGGGGAGGACTTGAGTTCTTGCTGCTATGCATACTGGTGCCTTCCTTGCTTTATGTGCTCCACCACTGGGGAGTTCGGAGAGAGCACCTGTCTGCCTCTGGTGGACATATTGGGCCCAGCCGTCATGGCTGCGTTTGGAGTCGCGATTTGCATTCCACCTGTGGGCCTGGCAATGAGGGTGGCAGTTCGCTACAAATATCAAATTGGgGGCAGTATCTGCGAGGACATCATGGTGTCTTGCTGTTGCATCTGCTGTTCTTGGTGTCAGATGAATAGAGAAATCAAAGCCCGCAAAAAATCCATCAGAATAGTGCAAACTAATCCTGTGATGCAACCCCTGCCGATGGCAGTTAACCCACAAGTTGTGGCTATGCAGCAGCCGATGGTGATCAGTGCCGCACCGGGAGAGGTTGGTCCTGCAGTCCAGATGACAACAATCAATACAGTTGCTATGTAGACCTTTATTGCAGGTTTGCGACATGTATCttccttaaaaaatattataagagATTCATAGACTAATAGGTAAACCAGTTTAATCAATAGCGGCGCAGGTGATTTGGAAAATGGGTTTATATTTTCTAcgttatattgtgtatattctttacatcagtttttttttggtttatgtaaTCAGactcactttttttaaataaattgtaaattgttttaaa
>XM_043250682.1
tgTAGCATTTTGCAAAATTCTTTGAAACTTTCAATTTAgttaaagttattaatttgGAAAATTAATATGGAAATTTGAGCATAGGTAATTAGATTACAGTTACTTTGTGGTTATTATCATTGTTGTACATTCATATACATTTGTTGTCCTCACAAGcctacattaaaaacaaaaaaaatgcagtgtaaCTGGTTTATAGGCGCCATTGCAACTGCATCACAGTTAaggtattatatatttattattattattttggaaatatgaaaaattaaagTGCTGATAAAATAATTGGGTGAGCAACAGGAAACCCTTTTGAACACATTGCTAATGTTGCTCAAGAATTCTGTGGTCAATTGCAACTTAGCCACCATGTTAAGGCCCAATTCTTGCCAAGTTGCCAAGAAGTAATCAGTCTTACTTTTTACATATAAGACAAATATGCATTAACATGAACTAGCCTTTTAAGACTGGtctaaacattataaaatgctaGGTTACATACAACAAAGCACTGggtaaaatatggacaaacccAGCAACTGGGTTATTTTGTCCAAGCGGTGGGGTTAaatgtttaactgttaaatgtttaaatgtttaacccaACCTTCTGGGCAGTAACCAAAATGCtgggtcaaaacaacccaataACTGGGTTTGTCCATAGCTTATTTGATCTAAAGCTTGGTTTGTGTATTTAACCCTGCATTTTTAGAGTTTACATTAAACATGATCAATCAACAGTATTTCCAGTTGTCTGACACTGAACTTGCCAAACAAGGTctttagaaaaacattcattctAAAGTGTTGCAATACGTGACTGTCTGCAATGCATGCATGCTTTTGAATTTGCATGAAATGAATATGTATGATATATCACCGGGATCAGTGAAACCCTAAAGAGGTCATGTGAtgcgatttcaagttttcctttctctttggagtgataaaagctgttagtgcataggtAAGATCCCTAAAATTGCGAAGACTAAAGTGTCAAAAGCAAAGAggtattctttataaaagttatgatttGACCACACCCCCCTAAAAAGGCTCATTTAAACACGCTCTCTACTTGTATATATCACAGAAAGAGTTTTTTTGTATAACCCAAGTTCcaatgtttatgcaaagaaaggAGGAGAAACTATTATTCTTGCTGTAGTTGTTGCTGCcagcgccatgttctggagacgctgtgttcCATTGGGAAAGTGAAACAACTTTTTCTCTGCATTAAAAAGAgaacacaactagaaatcagtggttacgtggtatttacaacactgttccagaacagttcaacccaaATTTTAGAGTGCGTTCAGTGCATTTACTGATTCTTGAACCTGCAGAGAAGCCTATGTCGGCTGTGCATAGACGCAATTacaactctgcaaggacagtctggtgcttctgactcacaacctttaagtaagttatgcttttcaattaaaagaacctgccagttttgagcagtgaaggatagtgcttgttgtttgtcttttCTCCAATCACAAAAGAAGACATGATGTGTAAAAAGACAGCactaagtcattataatcagtaatttaCATcccccactggatgcaacaaatgcctcatttgtaatggcttataatgtttttgtgtcatagcaCCAGGACATGGCATCACTTTATAGTAAGGGGCGGAACATTTCCGTCACATGCTTGCGGTATTCGTCCAATCACAATTCAGCGGACAGCTGACCAATCCGAGCACACCTCacttttttagaacgatgaTCTTTGCTGATTTGTAACCTGTTTCAGCAAGGCGGGGCTTAgaagagaaacaataatgtacaTAAGATCAAATCATTATGGCGACTGTAGTTGTGCAGCAGCCTCTCGGCAAATACGGGATGGAATCTTGGAATTCTGCAATATGTGACTGTGGGGAGGACTTGAGTTCTTGCTGCTATGCATACTGGTGCCTTCCTTGCTTTATGTGCTCCACCACTGGGGAGTTCGGAGAGAGCACCTGTCTGCCTCTGGTGGACATATTGGGCCCAGCCGTCATGGCTGCGTTTGGAGTCGCGATTTGCATTCCACCTGTGGGCCTGGCAATGAGGGTGGCAGTTCGCTACAAATATCAAATTGGgGGCAGTATCTGCGAGGACATCATGGTGTCTTGCTGTTGCATCTGCTGTTCTTGGTGTCAGATGAATAGAGAAATCAAAGCCCGCAAAAAATCCATCAGAATAGTGCAAACTAATCCTGTGATGCAACCCCTGCCGATGGCAGTTAACCCACAAGTTGTGGCTATGCAGCAGCCGATGGTGATCAGTGCCGCACCGGGAGAGGTTGGTCCTGCAGTCCAGATGACAACAATCAATACAGTTGCTATGTAGACCTTTATTGCAGGTTTGCGACATGTATCttccttaaaaaatattataagagATTCATAGACTAATAGGTAAACCAGTTTAATCAATAGCGGCGCAGGTGATTTGGAAAATGGGTTTATATTTTCTAcgttatattgtgtatattctttacatcagtttttttttggtttatgtaaTCAGactcactttttttaaataaattgtaaattgttttaaa

Function

NR:

description
PREDICTED: cornifelin homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250681.1 False 909 mRNA 0.42 4 7519599 7523134
XM_043250682.1 True 2600 mRNA 0.39 4 7519599 7522486

Neighbor

gene id symbol gene type direction distance location
ponzr10 LOC107552045,LOC107742363 coding downstream 478 7514651 ~ 7519121 (-)
ugt5g2 ugt5g2,LOC107678052,LOC107552046,LOC107742408 coding downstream 5538 7511724 ~ 7514061 (-)
tlx3b tlx3b,LOC107742409,LOC107586149,LOC107676002,LOC105024610,LOC107552047 coding downstream 23261 7490561 ~ 7496338 (-)
parp14rs4 LOC107720697,LOC107552062,LOC107678011,LOC107552063,LOC107678013,LOC107677959,LOC107742382 coding downstream 77775 7427836 ~ 7441824 (-)
LOC122352681 NA coding downstream 93848 7415393 ~ 7425751 (-)
LOC122352928 LOC107675999,LOC107720693,LOC107677996,LOC107552059 coding upstream 8011 7531145 ~ 7533022 (-)
cldn7b cldn7b,LOC107586151,LOC107676017,LOC107678043,LOC107720692,LOC107552057 coding upstream 16146 7539280 ~ 7544064 (-)
fgf11b fgf11b,LOC107677987,LOC107586150,LOC107720691,LOC107676016,LOC103026543,LOC108443340 coding upstream 26859 7549993 ~ 7588859 (-)
epob epob,LOC107676014,LOC107586154,LOC107742357 coding upstream 158761 7681895 ~ 7686300 (-)
trnal-uag_1 NA coding upstream 161508 7684642 ~ 7684723 (-)
G75549 NA non-coding downstream 31032 7487473 ~ 7488567 (-)
G75548 NA non-coding downstream 32489 7486212 ~ 7487110 (-)
G75537 NA non-coding downstream 67548 7450667 ~ 7452051 (-)
G75533 NA non-coding downstream 147681 7370932 ~ 7371918 (-)
G75532 LOC107742369,LOC107687312,LOC107586143,LOC107720700,LOC107552065,LOC107682917,LOC107677962 non-coding downstream 149530 7366811 ~ 7370069 (-)
G75633 NA non-coding upstream 86006 7609140 ~ 7616184 (-)
G75654 NA non-coding upstream 164560 7687694 ~ 7687973 (-)
G75666 NA non-coding upstream 237699 7760833 ~ 7761098 (-)
G75667 NA non-coding upstream 238391 7761525 ~ 7763853 (-)
G75749 NA non-coding upstream 574172 8097306 ~ 8099806 (-)
G75454 LOC107552069,LOC107678002,LOC107586137,LOC107687386,LOC107742371,LOC108437806 other downstream 338778 7177324 ~ 7180821 (-)
sprn2 LOC107578968,LOC107720715 other downstream 888411 6628425 ~ 6631188 (-)
si:ch211-113d22.2 si:ch211-113d22.2,LOC107677989,LOC107705073,LOC107586211,LOC107688532 other downstream 978626 6538122 ~ 6540973 (-)
LOC122352369 colgalt1,LOC107672476,LOC107711180,LOC107757371,LOC107670492,LOC107567242,LOC108429625,LOC107587993 other downstream 2491086 5019307 ~ 5028513 (-)
LOC122352741 diras2,LOC107560410,LOC107736992,LOC107702570,LOC107558266,LOC107715878,LOC107670053 other downstream 3606857 3905614 ~ 3912742 (-)
LOC122352929 LOC107675999,LOC107677996,LOC107552059,LOC107720693 other upstream 1060 7524194 ~ 7528558 (-)
G75562 LOC107675999,LOC107720693,LOC107677996,LOC107552059 other upstream 7727 7530861 ~ 7544090 (-)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other upstream 327887 7851021 ~ 7859714 (-)
trnal-aag_32 NA other upstream 337088 7860222 ~ 7860303 (-)
trnal-uag_2 NA other upstream 339151 7862285 ~ 7862366 (-)

Expression


Co-expression Network