ponzr10 (LOC107552045,LOC107742363)


Basic Information

Item Value
gene id ponzr10
gene name LOC107552045,LOC107742363
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7514651 ~ 7519121 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250683.1
TACGTAAacaatatcttttattttggaggcgattaatcgcaattaattatttgacagcactaaatgtAACTGaagtttttgtatgtatatggaCAAACTACTTTacagtttaaatgtgtttgtgcttgCAATTCAACATTTAATAACTTCATAGCACAGTTAATTTTGAATATCATGGCAGACAGGAAGACTTAGTCTTGAGAACTGTtgtataattcaattattttgccaaataataattatgttcaCGACGGAGGCTAATCAGTCTTTGTTCAGAGCTGACATACATTACATCATtaactgttaattaaaaataatgttttattagattGTTCTTAGATTgcatcatttaatttcatttgaagtATATTATGGTAAATTTGGAACAACGCAATTATTAGTGTGATAGAATTTAAAGAATCCAATCATGTTGAATGTCTGTTGAACTTTTTCTTCTGGTTCAGCTGCTTTTTTTGTGGCTGACAtaccttgctttttttttttttttttttaatgcgcaTGTGTATAAATACACCCACTTTTACTTTCCTACGAAGGAAACAGGAGAGTGAAAGATAAAGTCAAATCACGATGTCGACCGTAGTTGTGCAGACGCCTGTGAAGAGTGGCTGGAATTCAGGAATATGTGACTGTTGCCAGGACATGAATTCTTGCTGCTATGGATTCTGGTGCTGTCCTTGCTTTATGTGCTCCACAACTGGGGAGTTCGGAGAGAGCACCTGTCTGCCTCTGGTGGACATATTCGGCCCAGCCGTCATGGCAGCTTTTGGGGTCCCAGTATGTGTGCCACCCGTGTCTCTGGGAATGAGGGTGGCGGTTCGCCACAAATACGatattgggGGAAGTATCTGCGAGGACATCATGGTGTCTTGCTGTTGCATCTGGTGTTCTTGGTGTCAGATGAGCAGAGAAATCAAAGCACGCAACCAAACGGTCACTGTACTGACAACGCATCCCGGGATTCAACCAATTCCGATGACAACCACCACTCAAGTTATCTCTACACAGCAACCGATAGCATTTGCTCCTGCGGCCCAGATGGCACCAGTTCAGACCGTCGCTACAGTTAATCTATAGACAGAATAACGATgccatacataatatataaacacgATACGTAttatatagtagtatatatatctAACATGCTTAAATTATCATTTGTGAATGGCTTGGATGCATTTGGAAAATGCCTGCGTATTTAAATTGTTCGGTCTCTGAGGTTTTGATTCAGTATTTTAAAGGGATCTCGTCTTTGAATAACCAGTAGATGAATAAAACTGAACGAAAAGATGCGATGTGTTTCAAAAATGGAAACAGAATGGGATTTTTCTTGAAAAGTTGTATAGAGGTGTAACATTTTCACTCAAGTGAAAgtgaagataaaataaaagtacaaatatctGGCCGAAAGCACACTCGAGTAAAAGTTTAAATTTGCactcaaatgttaaaaaagtacttttttcctgacagacatacaaatggagaaaacaaaacaaaatataatggcCCAGGTCAAACACATATATAGAGCAGCGATAACAAGTGAAATAACAAGTAATAACTTTCatttttcagatgaacacaaactGAGATCTAAACCATCTCTCTTCgtaaaacataataattcattcattcatgtaacGTAAGTGTGGGGCATCCAAAAGTGACACTTAAAAAACTACACAAAGTGAATATGACAGTAAATTACACAACCCCTGAAAATGAATCAGTGTCTTCTTAAGTGAAACTAACACTTTTAAGCACTTTTTGGaggtttattaaaatttaattaaaaaaagaaagaattttacagaaaaatattaattatatttaaatattcaccaatgattttacttgcatttaataTTGTGCAGTCAATATATTACACAGCTAATGGCTCTatcaaaacagaaagaataatGAAGAATCTTTTTTGGGGAAAACACCACTTTGCTACCTCAGCATGCTTCCTCAGATTTGACGGTGAACTGTTTGGACCCAGACTTTTCTCTGATGAAATTCATAACTGAAAAATGCGTAAAAACAATGATCATTGGCTTTCACATCGAGCACGCACATTTGAActtgcatttataatatttaatgtgcagaagataaaataaaaatgtaacgtgctttttaagttgaaataaaactgtaa

Function

NR:

description
PREDICTED: cornifelin homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250683.1 True 2188 mRNA 0.35 4 7514651 7519121

Neighbor

gene id symbol gene type direction distance location
ugt5g2 ugt5g2,LOC107678052,LOC107552046,LOC107742408 coding downstream 590 7511724 ~ 7514061 (-)
tlx3b tlx3b,LOC107742409,LOC107586149,LOC107676002,LOC105024610,LOC107552047 coding downstream 18313 7490561 ~ 7496338 (-)
parp14rs4 LOC107720697,LOC107552062,LOC107678011,LOC107552063,LOC107678013,LOC107677959,LOC107742382 coding downstream 72827 7427836 ~ 7441824 (-)
LOC122352681 NA coding downstream 88900 7415393 ~ 7425751 (-)
LOC122352679 LOC107720699,LOC107552063,LOC107742368,LOC107687282,LOC107586145,LOC107678013 coding downstream 100348 7390170 ~ 7414303 (-)
LOC122352925 LOC107551999,LOC107677957 coding upstream 478 7519599 ~ 7523134 (-)
LOC122352928 LOC107675999,LOC107720693,LOC107677996,LOC107552059 coding upstream 12024 7531145 ~ 7533022 (-)
cldn7b cldn7b,LOC107586151,LOC107676017,LOC107678043,LOC107720692,LOC107552057 coding upstream 20159 7539280 ~ 7544064 (-)
fgf11b fgf11b,LOC107677987,LOC107586150,LOC107720691,LOC107676016,LOC103026543,LOC108443340 coding upstream 30872 7549993 ~ 7588859 (-)
epob epob,LOC107676014,LOC107586154,LOC107742357 coding upstream 162774 7681895 ~ 7686300 (-)
G75549 NA non-coding downstream 26084 7487473 ~ 7488567 (-)
G75548 NA non-coding downstream 27541 7486212 ~ 7487110 (-)
G75537 NA non-coding downstream 62600 7450667 ~ 7452051 (-)
G75533 NA non-coding downstream 142733 7370932 ~ 7371918 (-)
G75532 LOC107742369,LOC107687312,LOC107586143,LOC107720700,LOC107552065,LOC107682917,LOC107677962 non-coding downstream 144582 7366811 ~ 7370069 (-)
G75633 NA non-coding upstream 90019 7609140 ~ 7616184 (-)
G75654 NA non-coding upstream 168573 7687694 ~ 7687973 (-)
G75666 NA non-coding upstream 241712 7760833 ~ 7761098 (-)
G75667 NA non-coding upstream 242404 7761525 ~ 7763853 (-)
G75749 NA non-coding upstream 578185 8097306 ~ 8099806 (-)
G75454 LOC107552069,LOC107678002,LOC107586137,LOC107687386,LOC107742371,LOC108437806 other downstream 333830 7177324 ~ 7180821 (-)
sprn2 LOC107578968,LOC107720715 other downstream 883463 6628425 ~ 6631188 (-)
si:ch211-113d22.2 si:ch211-113d22.2,LOC107677989,LOC107705073,LOC107586211,LOC107688532 other downstream 973678 6538122 ~ 6540973 (-)
LOC122352369 colgalt1,LOC107672476,LOC107711180,LOC107757371,LOC107670492,LOC107567242,LOC108429625,LOC107587993 other downstream 2486138 5019307 ~ 5028513 (-)
LOC122352741 diras2,LOC107560410,LOC107736992,LOC107702570,LOC107558266,LOC107715878,LOC107670053 other downstream 3601909 3905614 ~ 3912742 (-)
LOC122352929 LOC107675999,LOC107677996,LOC107552059,LOC107720693 other upstream 5073 7524194 ~ 7528558 (-)
G75562 LOC107675999,LOC107720693,LOC107677996,LOC107552059 other upstream 11740 7530861 ~ 7544090 (-)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other upstream 331900 7851021 ~ 7859714 (-)
trnal-aag_32 NA other upstream 341101 7860222 ~ 7860303 (-)
trnal-uag_2 NA other upstream 343164 7862285 ~ 7862366 (-)

Expression


Co-expression Network