LOC122352927


Basic Information

Item Value
gene id LOC122352927
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7533188 ~ 7538271 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250684.1
GGAAGGTTTAGGTGTTgatgtttgctgaaaatgttgaAGTCACCATTGTAGAGATAAGCAATCGTTGTAGAAGTAGGAGGTTTTAATCTTAGGTTTACCAATCAAAACTCATCTATGGCTCCTCATGCATCTGCAATGTCTTAGTATTTCTTTGTTATTcttatatttgcttttattttcggTTGTGGCTTTttgcaacctttttttttttgccgttcaaaaatcatgtaaaaatagTTCGATATTTCGTCACCACTGCTGAGATTCACATCTAAGAGCTTAAATACAAAACCCGGGAGAAAATAGGTAGAAGAAagctttttgattttaataagaaGGCTTTCCGAACGTTCTCCGCCGAGGTAAAGAAACCCTGTTAGCAGTAGCAtccattaaacattttctccaagTGCCTCTCGCTcatgaaaaatgcaatatattatgGATGGACCCAGTAACACACTTTAACTCATATCTTGACATCatggaaatattaaaatgaggaTGAGAGTCACTGCGCAACTTTTAACAGAGGTTTTTGTTGactgtgttttaaaggttgCAGTTTGCATACACTGTgtcctttctttcttcctcGTCAGTTTGGTTTTCATCCTCTTCCTATATACTTTTTCATTCTGACTCACGTGACGGAGCATATAAAGTTGTTTCAATTCACTGAAAGCGTGACTTCAAGATGCACGGGATGAGCCGTGTCCCCTTCAGTAATCTCTGAGACAGATTGTGATTGAAGATGAGCGGTTACAACTTTCTCCACAGATGTATTAGTTTGGTTTCGGGATTAAAGTCGGTAAAATGTAAGCTGTAGTACAGCTGGGCAGCGTGCAAGAGTCATAACATAAGGGGATGGGAATCTCTTAGTCACGAAATCCTCTTCCTGTTTTGAGAGGGAAGGCATGCCTAGTTTAAAAATCCCATTGGAATTCCTATTTTTTCAACATaacgtttattttggtttgCTGTTTCATACCTTATTTAAAATCTGACGTTGGAAAACATCAGAAAGTCACCGAAGCAGCGTGAGCGAATGACTAATGTGGTTCCTCCGATCCACTGCATCCTCTGACTGGAAGACACACGGAACACGAGGACGGTCACCGCCGAGGGATGCTGGTCAAGAGCGCTTGAATTCTGCGGTTTTTCGCCTGAATTACGAAGTGGAATGAAACACGAGCCCGCCGCAGAGACTACGACAAGCTGCACTGAAAACACGCGTCCACTGAAAATAACCGTTATATCCTCGCCGCGTCCGTCTCGTCTTCCGCCGCACTTCTGAATGCTGTACTGTTGCGGTGGAAGGGAGAAGGGGGAGAAGGAGCACGCGGGCGCGGAGGAGGCGTTGATGAGCAGCGGGGAAGCGGACGCCGTCACCGCTGGAAACCGGGAAGAAACTCCGGCTGCGGGGATGTTTGACACGACGGATATGCCCGAGCTCCTGCCGCACTCGGGGCAACTTCAGCTGAGTCCTCGTGACTCGGCGTGTCAGATGCAGCGTTTGCGGGTTGAGTTGAACAGAGACTGCTTGGGTCCCGAATCCCCTCAGCGGAGGTTAGGCCAGAGAGCCCCCAAACTCGGACAAATTGGACGGTCAAAGAGAGtggtCATAGAGGATGAAGACCTGGACGACGtcatgaacaacaacaacaacggaCCTCTACCTGTCCCTCTCAGCAACGAGCCGTCCTGAACCTCTCTGGGTTCCTAATGTTCTGGACCAGCTTATTTGGGAAATGCACCCTTCTACCACGGGACAGTCGGGACACTTTCAGCAGGAGAAAAGTCAGACACCTCTCCCAGTATCAGATTCACACAAGATCCGCATGCGTTTCAGCTGTAGTTTCCTAGTCGCATGGCAGCAGCTGTCAGCCTACAGCAGGCTACACAGGTGATGTGTTGTGTAGTAGCTTCTTAGACCAGAGCTCTGTGTGTGAGACACTCCTGCCTCCCGCTGGGAGAAATGTGCATATTATAGGCCAATTAACATATTTCTGACCAAAGGCGAGGACCAGCCACTGTAGATCACTCTGTTCAGGCTTCTGCTGTTATAAAtatgttgtctttcagttcgtTTCTTCAAACATTCGGTAAGAACAACGGCACAGCGTTCTTGTGGTTTACTTTTGTCTCTTAAAACTCTGGAAATGTATGCTGCTTCTTAGAGCCATAGTTGTAACTTTATCCATGACGATATTCAATATTCGAATGTCACCTAAAAGATATTTGCTCTGgtattttattaacagaaactAGAAGTATCTAGGTTAAAACAATGATACATTTCTTGATTGCAGTGGTTTCAGAATCGATCTTCTTTGatcactttgatttatttttgtaaatctcACAGCAACTTGTTTTGCTTTGCATCTCTAGCTGGTTTACGTGTTTTAATGCCTTACGAAACATTGCACGTTGCATTAGTTTTCACTGTGAAAAGCTATGCACTTGCTCGATCATTGCTGCGATGCATTacttttttgatgcaagtacgTAACAAGCTTATATTTAGTTGGCTGAATGATTCTGTGGCAcgtattaataatttttattgttttatgtgtcGCTTGCATTTTGTAGCTATTTAAGCACTGGAAAAAAAGGgccatgcaaaaaaataaatgtgtaaataagtttgacataataaatgacaaatgtaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250684.1 True 2681 mRNA 0.43 2 7533188 7538271

Neighbor

gene id symbol gene type direction distance location
npm1a LOC107678029,LOC107720694,LOC107552000 coding upstream 45832 7484402 ~ 7487356 (+)
kcnip1b kcnip1b,LOC107720696,LOC107552061,LOC107742366,LOC107586147,LOC108444575,LOC103024145,LOC102788752,LOC101476742,LOC107676032 coding upstream 49735 7450917 ~ 7483453 (+)
hrh2b hrh2b,LOC107678001,LOC107552049,LOC107720559,LOC107742384 coding upstream 146194 7381076 ~ 7386994 (+)
LOC122353014 LOC107720700,LOC107552065,LOC107742369,LOC107586143,LOC107687312,LOC107682917,LOC107677962 coding upstream 161255 7362680 ~ 7371933 (+)
cbln17 LOC107720595,LOC107677995 coding upstream 170650 7361078 ~ 7362538 (+)
nlgn2b nlgn2b,LOC107554306,LOC107678031,LOC107720555,LOC107675989,LOC108443341 coding downstream 77133 7615404 ~ 7681744 (+)
gigyf1b gigyf1,LOC107554307,LOC107586156,LOC107676024,LOC107742356,LOC107678014 coding downstream 157045 7695316 ~ 7708220 (+)
efnb3a efnb3a,LOC107742355,LOC107720690,LOC107678015,LOC107586157,LOC107676033,LOC107554296 coding downstream 170902 7709173 ~ 7747396 (+)
kdm6bb LOC107676007,LOC107742353,LOC107720684,LOC107586158,LOC107554308,LOC107678007 coding downstream 243917 7782188 ~ 7810083 (+)
tmem88a tmem88a,LOC107554311,LOC107720688,LOC107742406,LOC107586221,LOC107676001 coding downstream 273935 7812206 ~ 7817701 (+)
G75502 NA non-coding upstream 44621 7487475 ~ 7488567 (+)
G75516 NA non-coding upstream 125067 7402133 ~ 7408121 (+)
G75514 NA non-coding upstream 133155 7399428 ~ 7400033 (+)
G75513 NA non-coding upstream 133825 7398045 ~ 7399363 (+)
G75498 NA non-coding upstream 166583 7365417 ~ 7366605 (+)
G75574 NA non-coding downstream 143883 7682154 ~ 7682440 (+)
G75583 NA non-coding downstream 268090 7806361 ~ 7834899 (+)
G75591 LOC107720685,LOC107586160,LOC107676011 non-coding downstream 302327 7840598 ~ 7859712 (+)
G75593 LOC107678008 non-coding downstream 306948 7845219 ~ 7849236 (+)
G75607 NA non-coding downstream 362952 7901223 ~ 7902731 (+)
G75496 LOC107720595,LOC107677995 other upstream 167857 7360984 ~ 7365331 (+)
LOC122353118 pcdh1g1,pcdh1g2,pcdh1g3,pcdh1gb2,pcdh1g9,pcdh1g11,pcdh1gb9,pcdh1g18,pcdh1g33,pcdh1gc5,pcdh1g32,LOC107677968,LOC107742392,LOC107688304,LOC107720705,LOC107552007,LOC107677966,LOC107586189,LOC107742391,LOC107688284,LOC107688294,LOC107586188,LOC107720703,LOC107677965,LOC107586192,LOC107742390,LOC107586191,LOC107552005,LOC107720701,LOC107688268,LOC108191536,LOC107552066,LOC107586138,LOC107687322,LOC107677986,LOC107677985,LOC103911742,LOC107677983,LOC107742370 other upstream 192993 7197537 ~ 7340195 (+)
LOC122352414 pcdh1a3,zgc:123181,pcdh1a4,LOC107742396,LOC107552012,LOC107586180,LOC107720566,LOC107720564 other upstream 369965 7153586 ~ 7163223 (+)
G75422 pcdh1a6,LOC107677970,LOC107552011,LOC107677969,LOC107742394,LOC107720565,LOC107586182,LOC107742396 other upstream 382607 7142293 ~ 7150581 (+)
trpc7a trpc7a,LOC107677994,LOC107720592,LOC107552051,LOC105905985,LOC108437819,LOC106603261 other upstream 539567 6981492 ~ 6993621 (+)
si:ch211-237l4.6 NA other downstream 279539 7817810 ~ 7822518 (+)
LOC122353465 NA other downstream 322975 7861246 ~ 7861379 (+)
trnas-gcu_13 NA other downstream 323322 7861593 ~ 7861674 (+)
trnat-agu_2 NA other downstream 323689 7861960 ~ 7862033 (+)
arrb2a arrb2a,arrb2,LOC107742343,LOC107586162,LOC107676026 other downstream 334268 7872539 ~ 7880100 (+)

Expression


Co-expression Network