pcdh1a (LOC107564544,LOC107678039,LOC107708655,LOC107720713,LOC107586135,LOC108437809)


Basic Information

Item Value
gene id pcdh1a
gene name LOC107564544,LOC107678039,LOC107708655,LOC107720713,LOC107586135,LOC108437809
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 6734920 ~ 6806411 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250708.1
CGCGCGGTGCTGAGAAATCtcttcactcactctctcacatgCATAGAAATGCAGGATTAACCCTGTGCGGAGAAGATCCCTGTGCCAAAACTGCGTTGATAGTCTACTTCTGAGGAAAGCGAAGGGGGAAAACCCGACTCAATACGCTCTACCATGTACTGttacattttgacattatttcCGGTAGATTACGCTATCATTCCGTAACGAATAACGAGTGcgatacatttttgtaaaaacccGCACTCTCTCCTAAAACGAGTGTTTGAGGATTTATGGACTGAAACGGAGGGGGAGTTGCTGGCGTCAGAACTGTTCCTGTGTTGAGAAACAACAGAAAAGACATTTGAACAGCCATCATCAGCCGTAATTTCCAATTCATTAACACTTGAACGAGTGCCGACGTTATCAAACTGACGCGGAGTCCTGGGAATGGCGAGGAAAAATAACGCGGCCACTTATGGATTGGTTTCCAACGAAAGGATTTTATGTTTTCTTGACGTCTGGATTCTTTAAAGCAGGTGTTTAAGGGCTCCGTGTGACCACGAAGGAAACGTCAGCTGTAGTTGATCCTCGGAACAAGAAGCCTCGGTCtcggcaggaaaaaaaaaaaaaaaaagtgatcgaCGAAGATTGAGGTGTTACCTCTCCAAGGGCCCATGGATCTCCCAGTGGTGTTGTTTCTGCTGTGGGGACTGTTACTGGACTTGCTGACTGGTGCAGTGGGTGGCATTCTATACCGTGTGCATGAGGAACAACCTCCGAGCACACTGATTGGCAGTCTTGCGGCTGACCAGGGCCTACCAGACACTGGACACCTGTACAAACTGGAGGTGGGCGCTCCCTATCTGCGGGTGGATGGCAAAACTGGAGATATCTTTACCACTGAGATCCCcatagacagagagacactgAAGGATTGTCGTAATAAAGGCAAACCTTGCTTTCTGGAGTTTGAGGTGTCCGTCACAGACCTCATTCAGAATCAGAGTCCACGGCTGATAGAAGGAAGGATCGAAGTGCAGGATATCAATGATAACACACCACAGTTCCCCTCACCTGTCCTTACCCTCTCAGTTCCAGAGAACACCCATGTGGGTGCACTCTTCTCAATTCCACTGGCCACTGACAAAGATACGGAGAGAAATGGAGTAGCTGACTACACCCTAACAGCAGGACCAGAGGCAGTAGCACTGTTTGGTCTGCAAGTTGCAGAGGACCGAGGTGAAAAATTACCTCAGCTCATTGTATTGGGAAGCCTTGATAGAGAACGGAAAGACTCCTACGATCTCACAATCAAAGCCGTGGATGGAGGCAATCCTTCTCGCTACAGCAGTGCCTTGCTGAGGGTCGTCATTGCTGATGCCAACGACAATGCACCTCAATTTGAAAAATCCTCCTACGAAGCAGAGGTCGCAGAGAACAGCCCAATTGGACACTCTGTGTTACAGGTGAAGGCTAATGATTCAGACTTGGGTCCTAATGGTGAGATTGAATACACGTTGCATCAGGCCATTGATCCTGTGCCAAAACTTCTCCGGATAGACCGCTCATCAGGCATCATATATGTTAAAGGCCCACTGGATCGTGAGGAGATCAACAATTTGAAGTTTTATGTGGTTGCACGAGACAAAGGCCCTTCACCCAAAAGTTCGAAAACATATGTTTCTATTGATGTAACCGACCAGAATGACAATGCACCAGCAGTGGAGATTCGAGGTATTGGTCTTGTGACCCATAGTGATGGAGTAGCAAACATTTCAGAGGATATGCCTGTAGGCACTGCAGTGGCACTGGTACAGGTTTCAGACAAGGATGAGGGAGAGAATGCCGTGGTGACCTGTGTGGTTGCTGGTGATGTTCCTTTCCAGCTTCGGCCAGCCAGTGATTCATCAGTTGACAACAAGAGGAAGTATTTTCTGCAGACCACAACACCTCTGGACTATGAAAGGGTTAGGGAATACCGTGTGGAGATAGTGGCAGTGGATTCAGGCAATCCTGCTCTGTCCAGCACTAACTCGCTAAAAGTCCAAGTGACTGACACAAATGACAATTCCCCTATATTCTCACCGACTCTGTTTGAAGTAGAGTTTGCTGAGGAGAACCAGCCAGGAGAAAAAGTGGTAGATGTAATTGCCTCAGATGCAGACAGTGGCACTAATGCAGAGCTGGTCTACAGCATTATTGCGGACTCTTCAACAAGAGGACTTTTTGAGATTGACCCTAACTCAGGTGAAGTACGTGCTCGGAGCCCTCTTGATCGTGAGCACAAGGAGCGCTACGAGTTCCGTGTTACTGCAGCAGATAAAGGGGTTCCCAGTCACAGGGGTACTGCTACAGTTGTGATCAAGGTGCTTGATCGGAATGACAATGATCCAAAGTTTATGCTGAGTGGATACAGCTTCTCAGTCTTGGAGAACATGCCACCCCTTAGCCCTGTTGGCATGGTTACAGTACAGGACATGGACGAGGGCGAGAATGCTCAAGTGCTACTTTCTGTGGAACCCGATGTAGGCAAATTTGTAATCCAGAATGGGACTGGCACTATTCTGTCCAGTATCTCATTtgacagagagaaggagagcagTTACACATTCCGCTTGAAAGCTGTAGATGGAGGGGATCCACCAAGATCCTCCTATGTTGGTGTGACCATCAATGTCCTCGATGAGAATGATAATGCACCTGTTGTTACCAAACCATCTAACTCATCCTTCATACGTCTCTCTCCCATGGCTGCTCCAGACAGTGTTGTGGAAGTGGTCGAAGCAGAGGACATTGATTCCGGTTCGAATGCTGAGCTAGTATATAGCATTGCTGGGGGAAATCCACATGACCTATTTTACATCTCTCCATCTAATGGCGAAATCACATTAACCAAGGAACTAACTCGCAAACACAGTGGTCTGCATCGACTGGTGATAAAAGTGAGCGATAGAGGCAAACCCTCCCGCCACGCCATTGCCTTGGTACACATTTACGTAAATGAAACGATTGCCAATGTAAGTCACGTGGAGGCGCTTGTGGGGCATAGCTTGTACACCCCACTGGACATGGACATTGCAGGAGACCCAGATTATGGTTTGGCTGCCCAAAGAAGCAACATTGTATATGGCAGTTTAGCTGGAGTGGCGGGAGTGGTCACTGTGATTGTTGTTGTGGTTTTCATCAGGCATCGCCTTCAAAGAGAAGCTAAAAGTGGTTATCAGGCTGGCAAGAAAGAGACCAAAGATTTGTATGCCCCCAAGCAAGGTCCAAAAAGTGGCAAAGGGAGAAAGGGTAAAAAAGGTAAGCCACCAAAGTCACCTAAACCTCTTGGAGAGGATGAGGAAGTCAGCCTTCAAAAGAGTCTGAAATTTAACCTTGATGGGGTCAATGACAGCCCCAGGATCCATTTGCCTCTGACATATCCGCCTGGAAGCCCTGACCTAGGCAGGCACTATCGTTCGAATTCCCCATTGCCCTCCATCCAGCTCCAGGCCCAGTCCCCATCTGCCTCCCAAAAGCATCAGGCTGTCCAGGAGCTCCCTGCTGCCAACACCTTTGTGGGAACAGGCGGCGATGACAACTCCACCGGCTCAGACCAGTACTCGGATTACAGCTACAAGACCAATCAACcaaaatacagcacaaaaacgCTCCCGCATCGCAGAGTGACGTTCTCCACAGCCAATCCCGTGCAAGATCAACAGGACTCCTCTCAGCAGAGTTACTACGACAGCGGTCTGGAGGAGTCAGAGACCCCCAGCAGCAAGAGCTCTTCGGGACCGCGTATCGGCCCCCTCGCCCTGCCCGAGGACCACTACGAACGGACCACCCCTGATGGCAGCATCGGAGAGATGGAACACCCAGAAACCGATATTCGCTCACTGCCTGATGTTGCCATGACGGGAAACTGCAGTCAGGAGTGCAGCGAGCTGGGTCACTCAGATGCCTGTTGGATGCCCGGTCAGCCTTCGCCCGTTCGCAAGACCCGCAACCCCCCTAAACTATCCACGTTTGTGCCTTATCAGGAGAGGGGGAGCCTGGGACGCCTGGCCAATGGGAGCGTTAGGCTGGGAGGAGAGGAGAACAGGCCGCGCCTCCCACCTTCCCGTAGTGCCTACTCCAGTAGTGACCACGCCCCCAGTGACCACGCCCCATTGGAGGAGGTGCCTCTGAGCGTGACGTCAGAGTTCCCGCCTACCAGCCCCCCCTCCAATCACGCCTCGAAAAGAGAAATATACCTGTGAGATAACCACACCCTTCATGTTTGATTGACGCACATCAGAAATTGCAGAGACACGGTTGCGAAAAGAGAACATCGTATTTGCGACAGGATATCAATTGAATAGAAAAACACGCTATTGTCATAATGTCAGAGtagattgattttatttatttatttattcatgcattcatacatctatttattatcacttttaacatgtttttcCGTTTCTTTTAACTGTTCgtactgtttttgtttaccGCATACCATCAAAAACAACCAACGCATACTTTTACGTGACTAACCAACTTTTAGCTTCGCAAGCCTACAGAATGTTCATGAGTTCTTTTACTAGATTACCAAGTGCTGAAGTGGGCAGGAGACACTGCTGTAAAAGGGTCTTGAGCCACATCCAGCACTCTTAACTTGATCCTGTCCTCAGAGGAGAGCAGTCTTTATACATGTAAAACgctgtaaatacatttgtatggtgtatatatgaatattactATCAGGCTCGAGTTGAAAAATAGTGTGAAAAGTTACATCTAAATCAGCCTGAACACCTGAAGTGTGTGTCGGTACCACTGCTTTCGAGGGTCTGAACGTTTGTAATGGCCGCATGGGAACGTGAATAGACGAGCTGGAGTGGAGGGAAAATGTCCCGATGGTGCTCCGTGACCCTCGTTGCGCCCGTCTAGGACCCGGATCCTCTGCAGCACGGTGTATAGCTGTGTGTTCGGTAAGGGCGGGCGGTGGGTTTAACAGCGATTAACTCACTATGACAGACCTTAACATATGCCGGTGTATGCGTTCATGCGTCAGGGGACCTACTGTCACGAAAAGTAACACATGTGGCTTCTGGCACATTAACACGCTATTCAACAGATGAGAATGTGCGTGCATACTTTTGTGTCATGTGGCAGAACTTGTGTTTTTTGGCACTGTGAATCTCTCCTGAACTCCCACGATGTAGTGCAAACGCTGCCTGGCACTCGCAAAGACGCCTACGGCTCACACAGCACAGCCTCAGTGAGGAGGAGACCACCTGCCTCCCCTCAAATTATCAGTAGAGTTTTGTTAACTCGACTGCGCGTTAAGTCCACAAACACACCTAGTCTCCATCGAATGGGTCCATTTTCACCACGCATATATTCACGGtcctgttttctttgttttttacgGTTTGAGATGAAATCTTTATGTCCTATTTAGACTTTGTTTGAAGAACAAATGTATTAATGCCTTAAAACAGTTGTATATAACAATCACAATGGACAAATTAGACTGATAATCCTGTCTTGTCTTTCGCATGTCaattgtgcatgttttttttccacaatcgaaaaatgacaaaatgttacaaACGATCACGTCACCATTAGCCTATTTTCAGCCACactttgttttttcataaatgttctGTCCCCTCCATCAACTGggtaatatagtttttttctttgacacTGTGCTGACTATCTAACCTGCTCTAAAGCTGTGTCTCCCTCCAAGTTTCAGAGAATCTCTGGGGGACCATTTTGACAATGACTATCTAGTGTGCTCAAGAACCATATATCTGATGGACATTATCATTACTATTGCATCACGGTGCATCGCCTCAATATCTCTACTTTTTCTGCACCTACTGCAGCGCGGTACCTGCCTAGATCCCGGCGCTTGGGCGAGCGTGCTTTGTCTGCAGGGGGGTTGACGATGGGCATTTCCTTAATTAGGGTGAGTAATGAGTGTGGTGCAGTTGGCATATGCGAACACTCCAAGCCCCAAAGGAAGCACAGATCACAGAAAAAGATCCTGGTCCAAACGCTTCAATTGTTTAGCGAGTCGCATTTTTCACTGCACTTACCTCATCGCGACTGCCTTCAGCACCTCTCGCCGAATAATTAAGGCTGAAACGTATGGAAATTACTGGACGTAGCCATGATTAAATAAGGCGAATGATTATCCCGCCCTAAGGAAAGAAAGCACATTATGCTGTTTTCAAAGCCATTTAGTGACTCtgataggaaaaaaataaaaatccggCGAGAGTCATGATCCAGCGTAATTAGCCCAGCTCGCTTTTCCTCCTTCGTGCTGCAGCCGCGCTCTTCCCGGGCGAACGTGTGAGATCGCTGACCTGGACTTAACACGGCTAAAAGATAGAGATGACCACAAAACTCTACCACCACTTAAAGGCTTTCATCTATTCAAACTCTGAGTGAAGCAGGTTCTGACCTTCCTCCACTCTGATGCCGGCCTGAGTCAGATAGTCTGAATTGCAGGTTTTGACTCCTCTGGCTTCATCTCGGCTGTTTTATTCCTAGTAATTCTAAGGCTAGACTCCTAGAGTCCTTCGGCCCAAAAATGCCGGAGGACGGATGGAGGAGTGTCCACTTCTCGTGGTTGTTTTTTAAACTGGTGTTTAGATGTGTGCTCTTTCGCTGTTAGATGTCTGGATGTGATGAGACGACCGTAACGAACGAGGGAGTCTTTTCTTCGTCCTTAGAGCGAGACTTTTCTTCATAGACTAACGAAAACTGGTGTTTGTGGTAAGCATCTCTTAAAAAGTGTTCTGTACATAGCTCTCCACATTCCTTTGCGTGGTGTCAAGCAGGCGACGAGTTGAGCATGAATTCCAAAGATAATTGGTAGAAACCGTTTACTGTTCTTGCTGAAATGTTAGTGCCGGTTCAGAAACCTTTTCTTGAGAACAAAAGCGACGTTCACTGCACAAAACTCATCTTCACCGTTCACCCCAAACTGAAGACAGCTGCCTTGAAAGTATGTCTTTTGCAGGAGAGTTCAAAACTTGTTATCCTTAATTGttggttatatttatataggacTAAAAATGCTTGTGATGATctgtttttgtacagttttatgTACATGCAAGTGAAGCTTTTTAAATCTTACAACAAAAGCCGATGGCATATAAAAATCGTAAAGTGTTTATTGAGATGTGCACATCTTGCCTTGGATGGATTGATCTTTTTTGCCGAGTCAGTGTGAATGTGGCCGTCGTATGCCTGCACCGTAGTCATTCACTGGCTCCTGTCACCGAGGGCTTTATcagattttatgtttattgtgaACAGTGGATTGTCCGATCCGACTTGTTTGTTTGATTcccatgtgttttgttttgttccgtTTCCGCATGTTGAAAACAAACCCCTTGTAATAAGTCCTTGCaaagtttgtaataaaatgagtgaagaaaaaaaaaacaaagaaatacatttgcttGGTGAGTCATTGTTTAAGAATGAATCTAGGGACTGTGATCTCTCCATAAAgctttttcattaataaagcaAATTGATCTGACAAAGA

Function

NR:

description
PREDICTED: protocadherin-1-like isoform X1

GO: NA

KEGG:

id description
K16498 PCDHD1; protocadherin delta 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250708.1 True 7546 mRNA 0.47 5 6734920 6806411

Neighbor

gene id symbol gene type direction distance location
kcnip3b kcnip3,kcnip3b,LOC107572711,LOC107678047,LOC107720714,LOC107687448,LOC108233759,LOC101482209,LOC108264878,LOC106535652 coding downstream 72082 6640993 ~ 6662838 (-)
rassf2b LOC107720572,LOC107708653,LOC107687490,LOC107586133,LOC107678048 coding downstream 96513 6631681 ~ 6638407 (-)
nsd3 whsc1l1,LOC107720716,LOC107687514,LOC107705078,LOC107678004 coding downstream 133529 6580621 ~ 6601391 (-)
plpp5 plpp5,LOC107720719,LOC107678050,LOC107553701,LOC107705081,LOC107586127,LOC107687571 coding downstream 154972 6575421 ~ 6579948 (-)
ddhd2 ddhd2,LOC107553702,LOC107678022,LOC107586212,LOC107687560 coding downstream 160196 6567280 ~ 6574724 (-)
avd LOC107552052,LOC107677992 coding upstream 168790 6975201 ~ 6977380 (-)
LOC122353004 LOC107552052,LOC107677992 coding upstream 251300 7057711 ~ 7059761 (-)
fgf18b fgf18b,LOC107552074,LOC107742373,LOC107687415,LOC108437818 coding upstream 288234 7094645 ~ 7102080 (-)
LOC122352679 LOC107720699,LOC107552063,LOC107742368,LOC107687282,LOC107586145,LOC107678013 coding upstream 583759 7390170 ~ 7414303 (-)
LOC122352681 NA coding upstream 608982 7415393 ~ 7425751 (-)
G75366 NA non-coding downstream 86250 6645924 ~ 6648670 (-)
G75294 NA non-coding downstream 352479 6380936 ~ 6382441 (-)
G75297 NA non-coding downstream 382036 6352535 ~ 6352884 (-)
G75209 NA non-coding downstream 457590 6272225 ~ 6277330 (-)
G75191 NA non-coding downstream 579144 6148920 ~ 6155776 (-)
G75429 NA non-coding upstream 223582 7029993 ~ 7082458 (-)
G75433 NA non-coding upstream 272144 7078555 ~ 7079365 (-)
G75445 NA non-coding upstream 301347 7107758 ~ 7231920 (-)
G75459 pcdh1a3,pcdh1a4,pcdh1a6,LOC107552014,LOC107720569,LOC107720570,LOC107742396,LOC107586180,LOC107677970,LOC107742394,LOC107742395,LOC107678002 non-coding upstream 321177 7127588 ~ 7148979 (-)
G75460 pcdh1a3,zgc:123181,LOC107742396,LOC107552012,LOC107586180,LOC107720564,LOC107720566 non-coding upstream 339570 7145981 ~ 7154097 (-)
sprn2 LOC107578968,LOC107720715 other downstream 103732 6628425 ~ 6631188 (-)
si:ch211-113d22.2 si:ch211-113d22.2,LOC107677989,LOC107705073,LOC107586211,LOC107688532 other downstream 193947 6538122 ~ 6540973 (-)
LOC122352369 colgalt1,LOC107672476,LOC107711180,LOC107757371,LOC107670492,LOC107567242,LOC108429625,LOC107587993 other downstream 1706407 5019307 ~ 5028513 (-)
LOC122352741 diras2,LOC107560410,LOC107736992,LOC107702570,LOC107558266,LOC107715878,LOC107670053 other downstream 2822178 3905614 ~ 3912742 (-)
hnrnpd LOC107702593,LOC107715890,LOC107573849 other downstream 3127132 3601612 ~ 3607788 (-)
G75454 LOC107552069,LOC107678002,LOC107586137,LOC107687386,LOC107742371,LOC108437806 other upstream 370913 7177324 ~ 7180821 (-)
LOC122352929 LOC107675999,LOC107677996,LOC107552059,LOC107720693 other upstream 717783 7524194 ~ 7528558 (-)
G75562 LOC107675999,LOC107720693,LOC107677996,LOC107552059 other upstream 724450 7530861 ~ 7544090 (-)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other upstream 1044610 7851021 ~ 7859714 (-)
trnal-aag_32 NA other upstream 1053811 7860222 ~ 7860303 (-)

Expression


Co-expression Network