LOC122352939 (LOC107720656,LOC107556866,LOC107685005,LOC107701120,LOC107718722,LOC107555193)


Basic Information

Item Value
gene id LOC122352939
gene name LOC107720656,LOC107556866,LOC107685005,LOC107701120,LOC107718722,LOC107555193
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 9416483 ~ 9422807 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250709.1
tctgtCTTTGGGTTTTTCTCCTGTGTTCATTTACCGCGTTTCATTGCCGTTTTTCATTCCGCTGTATTATATCAGGCTCCTCACCAGCGTTGTTTGTCTTCTGTGGCACTAATTGCTAGTACTGAGAAATTATGTTCTGTTTTTCTAAGGTCTTTCCGTGGAAGCATGTGAGCCGGCAACGACAATTGTGATTTACAATGAGTAGACTGTTcctaaaatatagtttaatatattaatcaaCTTTAAAATTTTGCCTGAAATGCCAAGCTCATCTTGAGACAGACATCCCCATTGTGAGGAGATTTGTTGAggagagggttttttttattattattatcaagcAGATGATTCACCGCCAACCTCTGACATTTATGTTTGGTAACATGAACTATGGTAGCTAACCGGCTGTATTCATAGAGAGCCTTGGATTCACATTGAAAGTGCGTAACGTGCATTTCTTCGCAATTCGTTGGCTAGACCCAAAtactaaatagatttttgtggAGAGCAGACCGCATCCTAACTTAATTTTCCTCATACAGCCGGTAGAGGAAGCAAGGGAGCGCGCGTGCACTGCCGCTCAGTCTGGAGCGCGCCTCAGAGCGTGACGTTCATTCAacgcttaaaaacaaaactcgCGGTAACGTGATTCCTTACAGCCCGACGAGGATACGAGAACATAACGGTATTCATCCGATTCAGTGTCATACgaCAGAGTGAATAGCAGTAGGTTGGGGTGATGTGGACAAAGAAAGATAAGAGGCCGCAGAAGTCGGAATGACACAGGGTTCCCCTACAGCGACCCTATTTGTGCTGCTCTTCCTGCTGGGATTTGCAATGGCTGGTATCCATCTCTGGCCATCAATGCACATCGCCTTGAGCAATGCCAGTGTGTTTGTGGATTACAGTTCTGAAAGCAACTTCACCGACCACAAGCTGACAGTGTCTTTGATTGACATGGACAGGAATGCTACAGTACTCTCCAGGGCGCTTCCTTTTAACAAATCAGAAGGGTCACTAGAGTTCAACTGCTCTTGCTTCCTGTATGCAGGTAATTTCAGATTCCGACTGGAGAAGAAACACAACTTTGGCGTGTCTAACAGGAGTGCAGTCTGGTGGTGGAGTCCGGTTCTCCATGTGCACTGGCCCACCTTTCACCTGGCTGTGCATCGTGGCAGCAACAACCAGAGCTCTAATGACTTTAGGATTGGAGTCTACACTAACAACAACTTCCATCCTTGTTCTAGCAGCAAAGCTTCAACTCTCTTCCTTGATGTCAGCTACCTGGAACAAGTCCAAGTAGGGAGGAACACCTTTGAGAAGGTGCAGAACCGGATAAGACACAATATTAAAGTAGTTAGGTCTCAACATCTGGAGATGCCATGTGCATCCCCTCTGACAGAGCGTGGCTTCATCCAGATCTCTCTAAAATCCCCTCACATCCAGGAAGACATCAAATCCTCTGGTCCACTTTACCTGTCCAGCATCTTCTCTTACAAGCTTGTTGTGGATAACATTTACAAAAGGGGCTGTGAAGGAGCTGTTTCTGTTCGTCGAATTGCTCCTCCCTGTACGGTCACAAATGGaaaagttttactttataaGGAAGAGATTAATGACATGGCTGCTCCCTCTCAACTGGCTTTCAATTTCCTCACACAAGGGGAAAATGAGACAGAGTTTAACTGCTCCATGTTTGACCCCGGCAGGAATAAGTACTGCTTCCATTTTACGCTCGTCTACAGTAAGGCTCCCAGTTTAGCCACCACCTGTGTGATTGTGCAAAGACATACAAGAATGTGGGGACCATGGCAGCCATGGAGTGGTTGTAGTGTGACATGTGGAGAAGGGGTGCGAGAGCGTGTTCGTGAATGTCtgctgccctctagtggtgGGATGCAATGCACTGGCATGGTTAGAGAGCAGTCACACTGTTCACTGGAAGACTGCACTGaggagCTTCTGCCTCCACCCCTCACCCCTCCGCCAGCTGTGAACTCGCCCCTAACTGGGAATCTAGTGGTAGTGGCGGGGATATCCTTGTGCCTGGCTGTGATCCTAGCCACCATTTTTATCACAGTGTGGAGAAAACTCTGCCATGCTCCAAAGTGCAGCTCCATGCGCCGTGGATCTCTGCACTCTCCCAGTGGTCGGAAGAACTCTGACGAGGCTTCTATCTGTGGTCACAGCATGCAGAGACCCAGTTTCTCAGAAAGCCTCCAGGCAGCTCCTCTCCAGAAGGGTCTTACCTTACCTGCAAAGCAGGTGCCTTTAGACCGAAGTGTGTTAGCTCGTCAGCAGAGCATGTCCCTTCCTCTTCCCCTTCCTCAAGACCCTGAGAGGATGTCTCCTTCTGGCCAAAAGATCCTTCCACCTATTTTTGGTTACCGCTTGGCTCAACAGCAGCTCAAGGAGATGAAGAAGAAGGGCCTAAAGGAGGCCATTCAAGTCTACCATGTGTCCCAGAGTCCAGTCGACGACACCATGCTAGAGGCAATGGCTTCAACCCCTACTGGTCTAACTCCAGTGCCCCAAGAACTTGACAGCCAAGAAGAATCAAGCAGCAGTCATTTCCGCATAAGGTCTCCCTTTACGGAACCCACGTGGCCTCccaaaaacaatgcattaacagacagacaaaaggTGGACTTTTTGCTGAGTCCTACCAAGTCTTCATTCAGTGCCATCTCCCATCGTCTTGAGCGTACTGCAGACTGGGTGGAGATGGTAGAACGCAATAGGCTGCCATACTCCAAGAATCCCAACTTCAGGAGGACTTCAAGCTTCCATGAGAACAACCAGAATCAGCTGCCCCTGTCCCGACCCTACAGAGAAAGAAGCATGACCCAAGTGACTCCTCGCCAGCTACCAGAGGGGAGCTGTAGAAGCAGACCCTGGGAGCATACACTTCCTGAACTTGAGGTCTGGTCTTGTTCCGGTCCGAAAGTAACTGATAGCTCAGTGGACCACAGGAGAAGACCATGGGTTGACACTCCTCCATCTCTGTCAACCTTGAAAGATTCAGTTCCAGTGACGCCAACAAAAGAACCCTTGGTGGATCGTCATCGTGTGGCTCGAAGTCCATCTTCTGCACTGGACCGAGCTGAACGGGCAGAACAGAACTGGAGCAGAAGAGGTCCTTCGCCCATCCAGAGGAACATACTAGCCAGGAAGCTACGAGAGGCTAATTCATCAACCTGCCAAAGGCAACGCAGTTCCACATTTTCTACCTCAGAGCAGCGCAGGGGACGCTGTCGTAGCCTTCCTCTCTCTGCTGACTACAGCAACTCCCCGTATAGTCTCACAGAGTCAGAGCAGCACATGATGGACATTTCTGGATACTTGGGTGAGGATGATGGAGTAGAAGTTCTGACTATTCATAAACTCACCTGATCAAACCTACGTTTCTGGGAGCTTCCTACAGTCTGCTGAAGCAAACATAAATTTCAAAATAAGGTCTTAATAGAATGAAGCACTTGTTTTTAACAGTAGCAGGTTATTTTTTCTCCATGTGGACATGCATATCAGATTTTGTTAGCTCTTTGTATTATATCAGTGTTTTCAAGACTTGAAATGAAATCTATgctcaattatatttttatttatggtgTTTGACTATTCATTTGAAaagccattttaatttttgcaaacaCTGTCATGGGTTTTAAACAGTATccatattacaataatatattgtacaCATTTGGATTTGTTTGTACACTGGAAAATTCTCAGGTTTTTGgagaaaaagtgaaaatgtcattttctttaatgaatgtttgttttactgtaaaccGTGTTAAAGATAcaatatgatatatgataaaAATAGTTTGATACAAAATCTCAA
>XM_043250710.1
tctgtCTTTGGGTTTTTCTCCTGTGTTCATTTACCGCGTTTCATTGCCGTTTTTCATTCCGCTGTATTATATCAGGCTCCTCACCAGCGTTGTTTGTCTTCTGTGGCACTAATTGCTAGTACTGAGAAATTATGTTCTGTTTTTCTAAGGTCTTTCCGTGGAAGCATGTGAGCCGGCAACGACAATTGTGATTTACAATGAGTAGACTGTTcctaaaatatagtttaatatattaatcaaCTTTAAAATTTTGCCTGAAATGCCAAGCTCATCTTGAGACAGACATCCCCATTGTGAGGAGATTTGTTGAggagagggttttttttattattattatcaagcAGATGATTCACCGCCAACCTCTGACATTTATGTTTGGTAACATGAACTATGGTAGCTAACCGGCTGTATTCATAGAGAGCCTTGGATTCACATTGAAAGTGCGTAACGTGCATTTCTTCGCAATTCGTTGGCTAGACCCAAAtactaaatagatttttgtggAGAGCAGACCGCATCCTAACTTAATTTTCCTCATACAGCCGGTAGAGGAAGCAAGGGAGCGCGCGTGCACTGCCGCTCAGTCTGGAGCGCGCCTCAGAGCGTGACGTTCATTCAacgcttaaaaacaaaactcgCGGTAACGTGATTCCTTACAGCCCGACGAGGATACGAGAACATAACGGTATTCATCCGATTCAGTGTCATACAGTGAATAGCAGTAGGTTGGGGTGATGTGGACAAAGAAAGATAAGAGGCCGCAGAAGTCGGAATGACACAGGGTTCCCCTACAGCGACCCTATTTGTGCTGCTCTTCCTGCTGGGATTTGCAATGGCTGGTATCCATCTCTGGCCATCAATGCACATCGCCTTGAGCAATGCCAGTGTGTTTGTGGATTACAGTTCTGAAAGCAACTTCACCGACCACAAGCTGACAGTGTCTTTGATTGACATGGACAGGAATGCTACAGTACTCTCCAGGGCGCTTCCTTTTAACAAATCAGAAGGGTCACTAGAGTTCAACTGCTCTTGCTTCCTGTATGCAGGTAATTTCAGATTCCGACTGGAGAAGAAACACAACTTTGGCGTGTCTAACAGGAGTGCAGTCTGGTGGTGGAGTCCGGTTCTCCATGTGCACTGGCCCACCTTTCACCTGGCTGTGCATCGTGGCAGCAACAACCAGAGCTCTAATGACTTTAGGATTGGAGTCTACACTAACAACAACTTCCATCCTTGTTCTAGCAGCAAAGCTTCAACTCTCTTCCTTGATGTCAGCTACCTGGAACAAGTCCAAGTAGGGAGGAACACCTTTGAGAAGGTGCAGAACCGGATAAGACACAATATTAAAGTAGTTAGGTCTCAACATCTGGAGATGCCATGTGCATCCCCTCTGACAGAGCGTGGCTTCATCCAGATCTCTCTAAAATCCCCTCACATCCAGGAAGACATCAAATCCTCTGGTCCACTTTACCTGTCCAGCATCTTCTCTTACAAGCTTGTTGTGGATAACATTTACAAAAGGGGCTGTGAAGGAGCTGTTTCTGTTCGTCGAATTGCTCCTCCCTGTACGGTCACAAATGGaaaagttttactttataaGGAAGAGATTAATGACATGGCTGCTCCCTCTCAACTGGCTTTCAATTTCCTCACACAAGGGGAAAATGAGACAGAGTTTAACTGCTCCATGTTTGACCCCGGCAGGAATAAGTACTGCTTCCATTTTACGCTCGTCTACAGTAAGGCTCCCAGTTTAGCCACCACCTGTGTGATTGTGCAAAGACATACAAGAATGTGGGGACCATGGCAGCCATGGAGTGGTTGTAGTGTGACATGTGGAGAAGGGGTGCGAGAGCGTGTTCGTGAATGTCtgctgccctctagtggtgGGATGCAATGCACTGGCATGGTTAGAGAGCAGTCACACTGTTCACTGGAAGACTGCACTGaggagCTTCTGCCTCCACCCCTCACCCCTCCGCCAGCTGTGAACTCGCCCCTAACTGGGAATCTAGTGGTAGTGGCGGGGATATCCTTGTGCCTGGCTGTGATCCTAGCCACCATTTTTATCACAGTGTGGAGAAAACTCTGCCATGCTCCAAAGTGCAGCTCCATGCGCCGTGGATCTCTGCACTCTCCCAGTGGTCGGAAGAACTCTGACGAGGCTTCTATCTGTGGTCACAGCATGCAGAGACCCAGTTTCTCAGAAAGCCTCCAGGCAGCTCCTCTCCAGAAGGGTCTTACCTTACCTGCAAAGCAGGTGCCTTTAGACCGAAGTGTGTTAGCTCGTCAGCAGAGCATGTCCCTTCCTCTTCCCCTTCCTCAAGACCCTGAGAGGATGTCTCCTTCTGGCCAAAAGATCCTTCCACCTATTTTTGGTTACCGCTTGGCTCAACAGCAGCTCAAGGAGATGAAGAAGAAGGGCCTAAAGGAGGCCATTCAAGTCTACCATGTGTCCCAGAGTCCAGTCGACGACACCATGCTAGAGGCAATGGCTTCAACCCCTACTGGTCTAACTCCAGTGCCCCAAGAACTTGACAGCCAAGAAGAATCAAGCAGCAGTCATTTCCGCATAAGGTCTCCCTTTACGGAACCCACGTGGCCTCccaaaaacaatgcattaacagacagacaaaaggTGGACTTTTTGCTGAGTCCTACCAAGTCTTCATTCAGTGCCATCTCCCATCGTCTTGAGCGTACTGCAGACTGGGTGGAGATGGTAGAACGCAATAGGCTGCCATACTCCAAGAATCCCAACTTCAGGAGGACTTCAAGCTTCCATGAGAACAACCAGAATCAGCTGCCCCTGTCCCGACCCTACAGAGAAAGAAGCATGACCCAAGTGACTCCTCGCCAGCTACCAGAGGGGAGCTGTAGAAGCAGACCCTGGGAGCATACACTTCCTGAACTTGAGGTCTGGTCTTGTTCCGGTCCGAAAGTAACTGATAGCTCAGTGGACCACAGGAGAAGACCATGGGTTGACACTCCTCCATCTCTGTCAACCTTGAAAGATTCAGTTCCAGTGACGCCAACAAAAGAACCCTTGGTGGATCGTCATCGTGTGGCTCGAAGTCCATCTTCTGCACTGGACCGAGCTGAACGGGCAGAACAGAACTGGAGCAGAAGAGGTCCTTCGCCCATCCAGAGGAACATACTAGCCAGGAAGCTACGAGAGGCTAATTCATCAACCTGCCAAAGGCAACGCAGTTCCACATTTTCTACCTCAGAGCAGCGCAGGGGACGCTGTCGTAGCCTTCCTCTCTCTGCTGACTACAGCAACTCCCCGTATAGTCTCACAGAGTCAGAGCAGCACATGATGGACATTTCTGGATACTTGGGTGAGGATGATGGAGTAGAAGTTCTGACTATTCATAAACTCACCTGATCAAACCTACGTTTCTGGGAGCTTCCTACAGTCTGCTGAAGCAAACATAAATTTCAAAATAAGGTCTTAATAGAATGAAGCACTTGTTTTTAACAGTAGCAGGTTATTTTTTCTCCATGTGGACATGCATATCAGATTTTGTTAGCTCTTTGTATTATATCAGTGTTTTCAAGACTTGAAATGAAATCTATgctcaattatatttttatttatggtgTTTGACTATTCATTTGAAaagccattttaatttttgcaaacaCTGTCATGGGTTTTAAACAGTATccatattacaataatatattgtacaCATTTGGATTTGTTTGTACACTGGAAAATTCTCAGGTTTTTGgagaaaaagtgaaaatgtcattttctttaatgaatgtttgttttactgtaaaccGTGTTAAAGATAcaatatgatatatgataaaAATAGTTTGATACAAAATCTCAA

Function

NR:

description
PREDICTED: thrombospondin type-1 domain-containing protein 1-like

GO: NA

KEGG:

id description
K24433 THSD1; thrombospondin type-1 domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250709.1 True 3850 mRNA 0.46 5 9416483 9422807
XM_043250710.1 False 3845 mRNA 0.46 5 9416483 9422807

Neighbor

gene id symbol gene type direction distance location
vps36 vps36,LOC107720661,LOC107701118,LOC107718721,LOC107685004 coding upstream 144 9407922 ~ 9416339 (+)
mtus2a mtus2a,LOC107718718,LOC107685001,LOC107701115,LOC107555194 coding upstream 26755 9325824 ~ 9389728 (+)
slc7a1a slc7a1,LOC107592154,LOC107718716,LOC107685000,LOC107720662,LOC107556867,LOC107701112 coding upstream 92603 9303636 ~ 9323880 (+)
paxbp1 paxbp1,zgc:158234,LOC107684999,LOC107701114,LOC107718769,LOC107592156 coding upstream 113849 9290851 ~ 9302634 (+)
LOC122352417 NA coding upstream 330824 9070840 ~ 9085659 (+)
tpte tpte2,LOC107685006,LOC107720658,LOC107718790,LOC107701101 coding downstream 2879 9425686 ~ 9430836 (+)
chordc1b chordc1,chordc1b,LOC107693908,LOC107720649,LOC107718728,LOC107701124 coding downstream 202784 9625591 ~ 9629093 (+)
grm5a grm5a,grm5,LOC107693909,LOC107720647,LOC107718729,LOC108423821,LOC107555132 coding downstream 211058 9633865 ~ 9658549 (+)
rab38b LOC107693892,LOC107557212,LOC107718792,LOC107701102,LOC108277304,LOC108423822 coding downstream 237910 9660717 ~ 9666861 (+)
bach1b LOC107693912,LOC107720644,LOC107557217,LOC107555188,LOC107718731,LOC107701131 coding downstream 277295 9700102 ~ 9710720 (+)
LOC122353086 NA non-coding upstream 132835 9277433 ~ 9283648 (+)
G75984 NA non-coding upstream 143194 9266815 ~ 9273289 (+)
G75974 NA non-coding upstream 163002 9245998 ~ 9253481 (+)
G75934 LOC107556871,LOC107701109,LOC107720665 non-coding upstream 704285 8708754 ~ 8712198 (+)
LOC122352915 NA non-coding upstream 711623 8703514 ~ 8704860 (+)
G76150 NA non-coding downstream 290020 9712827 ~ 9713108 (+)
G76162 LOC107693916,LOC107701134,LOC107701133 non-coding downstream 340199 9763006 ~ 9766783 (+)
G76182 NA non-coding downstream 400157 9822964 ~ 9824196 (+)
G76184 NA non-coding downstream 402110 9824917 ~ 9825970 (+)
G76248 NA non-coding downstream 462462 9885269 ~ 9902178 (+)
LOC122353220 slc46a3,LOC107701100,LOC107555149,LOC107718789 other upstream 20436 9349172 ~ 9396047 (+)
gbe1a gbe1,LOC107685012,LOC107708609,LOC106581537,LOC108410718,LOC105900410 other upstream 209148 9076866 ~ 9207335 (+)
G75937 NA other upstream 681487 8733779 ~ 8734996 (+)
G75935 LOC107556871,LOC107718714,LOC107720665,LOC107592158 other upstream 700206 8713203 ~ 8716277 (+)
LOC122352912 fam136a,LOC107569401,LOC107562571,LOC107713366,LOC107744116,LOC107686460,LOC107688083 other upstream 835355 8580009 ~ 8581128 (+)
map3k7cl map3k7cl,LOC107693871,LOC107701103,LOC107555143,LOC107557207 other downstream 269292 9692099 ~ 9699817 (+)
ufm1 ufm1,LOC107701138 other downstream 503514 9926321 ~ 9933221 (+)
frem2a frem2a,frem2,LOC107720635,LOC107701139,LOC107555183,LOC107557211,LOC107693873,LOC107718779 other downstream 520927 9943734 ~ 9992676 (+)
znrd2 sssca1,LOC107720620,LOC107701155,LOC107693896,LOC107548841,LOC107718786,LOC107555163 other downstream 895046 10317853 ~ 10320345 (+)
LOC122352518 NA other downstream 1716031 11138838 ~ 11146033 (+)

Expression


Co-expression Network